Basic Information

Insect: Osmia lignaria
Gene Symbol: gtf3a
Assembly: GCA_012274295.1
Location: NW:1016385-1021941[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00044 0.031 13.9 0.1 2 23 727 748 726 748 0.97

2 17 9.9 6.9e+02 0.2 0.7 1 19 754 772 754 773 0.89

3 17 2.8 2e+02 2.0 1.0 3 23 782 802 781 802 0.97

4 17 0.00016 0.011 15.3 1.2 3 23 811 832 810 832 0.98

5 17 0.0016 0.11 12.2 2.0 1 23 839 862 839 862 0.95

6 17 5.7e-05 0.004 16.7 0.7 1 23 868 891 868 891 0.94

7 17 0.78 54 3.7 2.5 2 23 899 919 899 919 0.94

8 17 8.3e-08 5.8e-06 25.7 2.1 2 23 925 946 924 946 0.97

9 17 1.3e-06 9.4e-05 21.9 0.2 1 23 952 974 952 974 0.99

10 17 0.00033 0.023 14.3 2.4 2 23 986 1008 985 1008 0.95

11 17 0.0047 0.33 10.7 2.5 1 23 1014 1037 1014 1037 0.96

12 17 0.0072 0.5 10.1 3.0 2 23 1059 1081 1058 1081 0.95

13 17 0.0007 0.049 13.3 1.4 2 23 1088 1110 1087 1110 0.96

14 17 2.3e-05 0.0016 18.0 1.0 2 23 1118 1139 1117 1139 0.96

15 17 0.00072 0.05 13.3 2.3 1 23 1145 1168 1145 1168 0.96

16 17 0.2 14 5.6 3.2 2 23 1175 1196 1174 1196 0.96

17 17 0.0057 0.4 10.4 2.6 1 23 1202 1224 1202 1224 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00044	0.031	13.9	0.1	2	23	727	748	726	748	0.97
2	17	9.9	6.9e+02	0.2	0.7	1	19	754	772	754	773	0.89
3	17	2.8	2e+02	2.0	1.0	3	23	782	802	781	802	0.97
4	17	0.00016	0.011	15.3	1.2	3	23	811	832	810	832	0.98
5	17	0.0016	0.11	12.2	2.0	1	23	839	862	839	862	0.95
6	17	5.7e-05	0.004	16.7	0.7	1	23	868	891	868	891	0.94
7	17	0.78	54	3.7	2.5	2	23	899	919	899	919	0.94
8	17	8.3e-08	5.8e-06	25.7	2.1	2	23	925	946	924	946	0.97
9	17	1.3e-06	9.4e-05	21.9	0.2	1	23	952	974	952	974	0.99
10	17	0.00033	0.023	14.3	2.4	2	23	986	1008	985	1008	0.95
11	17	0.0047	0.33	10.7	2.5	1	23	1014	1037	1014	1037	0.96
12	17	0.0072	0.5	10.1	3.0	2	23	1059	1081	1058	1081	0.95
13	17	0.0007	0.049	13.3	1.4	2	23	1088	1110	1087	1110	0.96
14	17	2.3e-05	0.0016	18.0	1.0	2	23	1118	1139	1117	1139	0.96
15	17	0.00072	0.05	13.3	2.3	1	23	1145	1168	1145	1168	0.96
16	17	0.2	14	5.6	3.2	2	23	1175	1196	1174	1196	0.96
17	17	0.0057	0.4	10.4	2.6	1	23	1202	1224	1202	1224	0.98

Sequence Information

Coding Sequence: ATGCAGcgcattgaaattaataacaagGATCATAATTATAGCGAAGTAAAACCAGATAATTTTGAATCTAGTGATAGTAACAGTCAAAATGCATATGACAGTGATATTAAACCCCTGTGTAAATCCACTAAAGAAACATTTGGACAAGTCAAAGacataaatgaattaaagaaGATAACACCACGTGTGAAATTATTGACTCACGATGCTAATAGTTTGAATGAGTTAACTAAAATTTCGTTGCACAACAAAATATCTGCACAAAAAAAGTTATCTATATTGGAGCAAACTAAacaagaattgaaaaaatattgtaggACTTGTGCTGGTTTAAAGTTTCCATTAGTTGATATTTTTAGTGAGAAAGGTATTCAGATGAGATTAAGTCAACAGATTAAACACttggaagaaataaattcatatgaCAGTTTATCCACTCAAATGTGTATGGACTGTATTTGTGATTTGAAAAtgagttataaattttttatgcaaattaagaAAGCAGAAGTTAAATTAAAGTCCATTCATTTTACTCTGACTGAGACAGCAACAAGAAATCTAGAAGCAAAGAAGATGCAATCTGTAGAACGTATTGAGAAACATGTAGAGAATATTGTGGAAGATAATTTCCTCAATCCATCTACAAGTAAGGAACACAATGAAGAGGTACTTGTACAAAAAGTACCTGAGGATATTCCAGTGAAAGATAATTTACACTgtataaaaataggaaaagtGAATGTTGAAGAGTTAGAAAAGCCTGAAGTTGAAGTTTTTGAAGAAATGataattgaagaaaacagTGATAATGAATCTATAGAAGAGTTTGATCCGGATGATCCTCCTTTTCAACCTGATAGTTCTGATGCAGCAGAATCTGATGATGAAGTAGTTGTACAAACACCAGCTGTAAAAAGACGAAATattcagaaagaaaatattccaagaCAATATCCTCCGTCAATGTTTCTTTGCGATTATAACTCAGCTCCAGATAATGAAAGTGCTGATTGTAATCAAACAACATATAAGTATGATTCATCTCTAAAAGCATACATTAAAATAGAAGATACAGAAGGTAATAATCATTCTTGTGAAccacaaaatataattaggaCTGAGACCGCATGTAATGCTGAAAGTACAAAAGAATCCACGAAACAACCGAACATATTAAAACGAAGacttttattacaaactaGAAAAGACTTGTCTGAAGAAACAGATGAAAATCAGTCTGGTGTTTCTGATAAAAATGGTGGTCATAAAGATTTTAAAGTACAAAAGTTAGatgtaaataattctttgaacATTAATAGTACCCAGGAAGATGGAATCATGTATGTTACAGTAAAGGGATCTAAaccgaatgaaatattattagtgaaagtaaaaaaaatggataaaCCGTTAGAGAAAAAAGATGACAAATGTTTGGGAAAAAAGCCTTTTGAAATTAAACCGatggataaaatttttaaacggtACGAAACACTTGttacaaaagaaaaggatTTGTTTCCAGAACGGACAAAAAAGTCTGAAATAAGAGAACAGATCATAGAAGAACAAATAGaagaatataagaaaaaaCGGGAGAAGGTATTAGGTGGGCATGCTAGTATTTCGCTCCCTATAAAGACCGAAGAACCTCAAACTCGTTACTTCAAACGTAACGAAAGTCAAGATAGCCAGAAACCTACTCCGCATGCGGAAAACGAATCAACTGTAAACgtacaatttattaaagatgAAGATGATTGTACtccaaaaattgaaaatgatattacgGATACTGCGGCGGAaccagaaaaagaaaaatccgttaatgaaaaatcatatGTAAATACCGAGGAGTATTTATCACGTTTAGCAAAGCTTAAACTAAAATGGGAGgaagcaaagaagaaaaaagaatctttGCAGAAAGAACTTGACGAATCTTATACAGaaggaaatattgaaaaattggcAAGAATTTTaggggagaaagaaaaaaatttacagGATTTTCAAGATTATTTAAAGCAACGTAAAATCGTAATTACAAGATTAAAAGACGAAGACATTATTTCCCTTTATGAGGATAGAAATAATGCAGTGCTTAAAAACAATTTGCCTGATTTAATAGACGAAAGTCAACCAGCAGATTACATTCCAGAAGAAAATTATCTGGAATGTGATTATTGTCCAGAAACATTTGCTTCTAAAGATATTCTCGAGGAGCATTTAAAGATGCACgattataaaattatgcatttttgCGAAGATTGTATGGAAGAATTTCCAACAAATAAGGCAAAACGAAATCACAGCGTAGTTtgcataaaaaagttattatgTAAATACTGTGAAGTGATGTTAGATTCAAAGGGAAAGAAACGCCAGCATGAGCAGAAACATTGCGATAATATGTATGGACAATTATGCGATGTATGCGGTGAAAAGTTTAAACATCAAGGAACTCTAGATCAGCATGTAAAAACCCAACACATGAGCTGGGAGAAAATATATCAATGCCCAAAGTGTCCgaaaaaatttgcattcaaACAGAAGCTTAGCTTTCATTTAAAGTCAGTACATACAACATTAAGGGCCTATTTATGCGAGGATTGCGGAGCAGACTTTAAAAATCCTGCGAGTCTTAGACATCATAGAATACGTAAACATCAACCGGTTGGCAATAAAAGAGAATGCCCAGTTTGTCATAaattagttccattttataGTCTTTCTAAGCATATGCATACTCATAAAGCTTATACCATTCAATGTCCACACTGTGACAAAATGTTTAAGAATAGTTCAACTTTGAAACAACATGTAAGAATTCATGAAGATCAACGTCAGTACCGTTGTGACACTTGTGGTGTTGGATTCAATAGGCGAGATGGCTTAAGATTGCATATGAGAGTACACGAGAAAACTGATAGTAGAGGATTAAAAGAATGTTCATGTCAAGTATGtggtgaaaaatttccaaaccaCTCGACACTTGTTATACATAGAAATCGAGTTCACAAGGATGGTAGACAGTATACATGTCACATATGTAACAGATCAATGATCTCGACTAGATCATTGGAATGGCACATGTCTCATATACACAATGAGTCTCTTCCTGGTGTTGTAAAAGAAGACACGGATGGAGCAccggaaaagaaaagagtgtCATGTTATCActgtaataaaacatttaaaacagaaatgattttaagaacGCATATTAAAAACACTCATATGGAGAAAGATCCAATGAAGTGTTTAGATTGTGAATTAACATTCACTTCTGAAGTAAGATTAAGACACCATATGATGGTGACTCATAACAGATTAGAAGGAACATTACCGTGTCCACATTGTCCCAAGAGATTTGTGAATCAGCTCAGGTTGAAGACACATATGATATCTCATTCTGAAGAGAGACCATATACGTGTGAAATTTGTGGATTTAACTTGAAAACGAAAATACAATTGATTAAACATCACCAGAATAGACACAGTGATGAAAGACCGTTGCAATGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGTGCTCTTGTATGTCATGAAAGGACTCATACTAATGAACGACCATACTCTTGTAGTGTGTGTAGGCaacgttttaaatatttaggtGACAAAAACAAACATGAGAGAAGACACGAAAGTTTAGGAGGATCTGGATTCAAAAGAATAGTACCTgggagaaatattaaacctaaAGTCCAGGAAGATTCTTCCTGTTCTGAACACGAACAAGAAAGTTTAACTAATGCAGAACATCAGATTGTCGAGGGCGAATACGAAGAGCAAACAGATCAACAGTACGAGGAAGAACAAATAGTTAAGTTTGAAGAACAGGAAATAGTAAAGTTTGAAGAACAAGAAATAACTGAAGAATATGAACAAGTATATGAAcagGAATATGAAGAAACGTCTAGAGAAGCTTCGGATGCAGCGGAAGTTATAATGAACATGGAAGATACCACTGTCTATACTGAAGAAGTAACGGCGGACAATATTGAACCGGCAGAAATAATAACAGATGAAATGAtgacaaatgaaatattacaatCAGGTGCTGTAGTTCATTTGCAGCAAGAAGATGATTCAGGAAAAATCCAAGTGATCCCAGTTATGCTGTCTTTACCTGATCTGTCTGATGCAAATACAGAGGTCAATTTAGCTACAGCATctattatgtataataattga
Protein Sequence: MQRIEINNKDHNYSEVKPDNFESSDSNSQNAYDSDIKPLCKSTKETFGQVKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKKLSILEQTKQELKKYCRTCAGLKFPLVDIFSEKGIQMRLSQQIKHLEEINSYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHFTLTETATRNLEAKKMQSVERIEKHVENIVEDNFLNPSTSKEHNEEVLVQKVPEDIPVKDNLHCIKIGKVNVEELEKPEVEVFEEMIIEENSDNESIEEFDPDDPPFQPDSSDAAESDDEVVVQTPAVKRRNIQKENIPRQYPPSMFLCDYNSAPDNESADCNQTTYKYDSSLKAYIKIEDTEGNNHSCEPQNIIRTETACNAESTKESTKQPNILKRRLLLQTRKDLSEETDENQSGVSDKNGGHKDFKVQKLDVNNSLNINSTQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKDDKCLGKKPFEIKPMDKIFKRYETLVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHASISLPIKTEEPQTRYFKRNESQDSQKPTPHAENESTVNVQFIKDEDDCTPKIENDITDTAAEPEKEKSVNEKSYVNTEEYLSRLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLARILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNNLPDLIDESQPADYIPEENYLECDYCPETFASKDILEEHLKMHDYKIMHFCEDCMEEFPTNKAKRNHSVVCIKKLLCKYCEVMLDSKGKKRQHEQKHCDNMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEDTDGAPEKKRVSCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKPKVQEDSSCSEHEQESLTNAEHQIVEGEYEEQTDQQYEEEQIVKFEEQEIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIEPAEIITDEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_01122611;
80% Identity: -