Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:3809287-3815147[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0012 0.076 13.9 0.1 2 23 726 747 725 747 0.97

2 16 7.8 4.8e+02 2.0 1.0 3 23 781 801 780 801 0.97

3 16 0.00044 0.027 15.3 1.2 3 23 810 831 809 831 0.98

4 16 0.0045 0.28 12.2 2.0 1 23 838 861 838 861 0.95

5 16 0.00016 0.0097 16.7 0.7 1 23 867 890 867 890 0.94

6 16 2.2 1.3e+02 3.7 2.5 2 23 898 918 898 918 0.94

7 16 2.3e-07 1.4e-05 25.7 2.1 2 23 924 945 923 945 0.97

8 16 3.7e-06 0.00023 21.9 0.2 1 23 951 973 951 973 0.99

9 16 0.00093 0.057 14.3 2.4 2 23 985 1007 984 1007 0.95

10 16 0.013 0.81 10.7 2.5 1 23 1013 1036 1013 1036 0.96

11 16 0.02 1.2 10.1 3.0 2 23 1058 1080 1057 1080 0.95

12 16 0.0019 0.12 13.3 1.4 2 23 1087 1109 1086 1109 0.96

13 16 6.4e-05 0.0039 18.0 1.0 2 23 1117 1138 1116 1138 0.96

14 16 0.002 0.12 13.3 2.3 1 23 1144 1167 1144 1167 0.96

15 16 0.54 33 5.6 3.2 2 23 1174 1195 1173 1195 0.96

16 16 0.016 0.98 10.4 2.6 1 23 1201 1223 1201 1223 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0012	0.076	13.9	0.1	2	23	726	747	725	747	0.97
2	16	7.8	4.8e+02	2.0	1.0	3	23	781	801	780	801	0.97
3	16	0.00044	0.027	15.3	1.2	3	23	810	831	809	831	0.98
4	16	0.0045	0.28	12.2	2.0	1	23	838	861	838	861	0.95
5	16	0.00016	0.0097	16.7	0.7	1	23	867	890	867	890	0.94
6	16	2.2	1.3e+02	3.7	2.5	2	23	898	918	898	918	0.94
7	16	2.3e-07	1.4e-05	25.7	2.1	2	23	924	945	923	945	0.97
8	16	3.7e-06	0.00023	21.9	0.2	1	23	951	973	951	973	0.99
9	16	0.00093	0.057	14.3	2.4	2	23	985	1007	984	1007	0.95
10	16	0.013	0.81	10.7	2.5	1	23	1013	1036	1013	1036	0.96
11	16	0.02	1.2	10.1	3.0	2	23	1058	1080	1057	1080	0.95
12	16	0.0019	0.12	13.3	1.4	2	23	1087	1109	1086	1109	0.96
13	16	6.4e-05	0.0039	18.0	1.0	2	23	1117	1138	1116	1138	0.96
14	16	0.002	0.12	13.3	2.3	1	23	1144	1167	1144	1167	0.96
15	16	0.54	33	5.6	3.2	2	23	1174	1195	1173	1195	0.96
16	16	0.016	0.98	10.4	2.6	1	23	1201	1223	1201	1223	0.98

Sequence Information

Coding Sequence: ATGCAGCgcattgaaattaataacaaGGATCATAATTATAGCGAAGTAAAACCAGATAATTTTGAATCTAGTGATAGTAACAGTCAAAATGCATATGACAGTGATATTAAACCCCTGTGTAAATCCACTAAAGAAACATTTGGACAAGTTAAAGACATAAATGAATTAAAGAAGATAACACCACGTGTGAAATTATTGACTCACGATGCTAATAGTTTGAATGAGTTAACTAAAATTTCGTTGCACAACAAAATATCTGCACAAAAAAAGTTATCTATATTGGAGCAAACTAAAcaagaattgaaaaaatattgtagGACTTGTGCTGGTTTAAAGTTTCCATTAGTTGATATTTTTAGTGAGAAAGGTATTCAGATGAGATTAAGTCAACAGATTAAACATttggaagaaataaattcatatgACAGTTTATCCACTCAAATGTGTATGGactgtatttgtgatttgaaaatgagttataaattttttatgcaaattaagAAAGCAGAAGTTAAATTAAAGTCCATTCATTTTACTCTGACTGAGACAGCAACAAGAAATCTAGAAGCAAAGAAGATGCAATCTGTAGAACGTATTGAAAAACATGTAGAGAATATTGTGGAAGATAATTTCCTCAATCCATCTACAAGTAAGGAACATAATGAAGAGGTACTTGTACAAAAAGTACCTGAGGATATTCCAGTGAAAGATAATTTACACTGtataaaaataggaaaagtGAATGTTGAAGAGTTAGAAAAGCCTGAAGTTGAAGTTTTTGAAGAAATGATAATTGAAGAAAACAGTGATAATGAATCTATAGAAGAGTTCGATCCGGATGATCCTCCTTTTCAACCTGATAGTTCTGATGCAGCAGAATCTGATGATGAAGTAGTTGTACAAACACCAGCTGTAAAAAGACGAAATAttcagaaagaaaatattccaaGACAATATCCCCCATCAATGTTTCTTTGCGATTATAACTCAGCTCCAGATAATGAGAGTACTGATTGTAATCAAACAACATATAAGTATGATTCATCTCTAAAAGCATACATTAAAATAGAAGATACAGAAGATAATAATCATTCTTGTGAACCACAAAATATAATTAGGACTGAGACCGCATGTAATGCTGAAAGTACAAAAGAATCCACGAAACAGCCAAACATATTAAAACGAAGACTTTTATTACAAACTAGAAAAGACTTGTCTGAAGAAACAGACGAAAATCAGTCTGGTGTTTCTGATAAAAATGGTGGTCATAAAGATTTTAAAGTACAAAAGTTAGATGTAAATAATTCTTTGAACATTAATAGTAACCAGGAAGATGGAATTATGTATGTTACAGTAAAGGGATCTAAAccgaatgaaatattattagtgaaagtaaaaaaaatggaTAAACCGTTTGAGAAAAAAGATGATAAATGTTTGGGAAAAAAGCCTTTTGAAATTAAACCGAtggataaaatttttaaacgctACGAAACACTTGTTACAAAAGAAAAGGATTTGTTTCCAGAACGGACAAAAAAGTCTGAAATAAGAGAACAGATCATAGAAGAACAAATAGAAGAATATAAGAAAAAACGGGAGAAGGTATTAGGTGGACATGCTAGTATTTCACTCCCTATAAAGTCCGAAGAAACTCAAACTCGTTACTTCAAACGTAACGAAAGTCAAGATAGCCAGAAATTTACTCCGCATGCGGAAAACGAATCAACTGCAAACGTACaatttattaaagaagaagatgaTTGTACtccaaaaattgaaaatgatagTACGGATACTGTGGAaccagaaaaagaaaaatccgCTAATGAAAAATCATATGTAAATACCGAGGAGTATTTATCACGTTTAGCAAAGCTTAAACTAAAATGGGAGGaagcaaagaagaaaaaagagtcTTTGCAGAAAGAACTTGACGAATCTTATACAGaaggaaatattgaaaaattggcAAGAATTTTaggggagaaagaaaaaaatttacaGGATTTTCAAGATTATTTAAAGCAACGTAAAATCGTAATTACAAGATTAAAAGACGAAGACATTATTTCCCTTTATGAGGATAGAAATAATGCAGTGCTTAAAAACAATTTGCCTGATTTAATAGACGAAAGTCAACCAGCAGATTACATTCCAGAAGAAAATTATCTGGAATGTGATTATTGTCCAGAAACATTTGCTTCTAAAGATATTCTCGAGGAGCATTTAAAGATGCACGATTATAAAATTATGCATTTTTGCGAAGATTGTATGGAAGAATTTCCAACTAATAAGGCAAAACGAAATCACAGCGTAGTTtgcataaaaaagttattatgTAAATACTGTGAGGTGATGTTAGATTCAAAGGGAAAGAAACGCCAGCATGAGCAGAAACATTGCGATAATATGTATGGACAATTATGCGATGTATGCGGTGAAAAGTTTAAACATCAAGGAACTCTAGATCAGCATGTAAAAACCCAACACATGAGCTGGGAGAAAATATATCAATGCCCAAAGTGTCCGAAAAAATTTGCATTCAAACAGAAGCTTAGCTTTCATTTAAAGTCAGTACATACAACATTAAGGGCCTATTTATGCGAGGATTGCGGAGCAGACTTTAAAAATCCTGCGAGTCTTAGACATCATAGAATACGTAAACATCAACCGGTTGGCAATAAAAGAGAATGCCCAGTTTGTCATAaattagttccattttataGTCTTTCTAAGCATATGCATACTCATAAAGCGTATACCATTCAATGTCCACACTGTGACAAAATGTTTAAGAATAGTTCAACTTTGAAACAACATGTAAGAATTCATGAAGATCAGCGTCAGTATCGTTGTGACACTTGTGGTGTTGGTTTCAATAGGCGAGATGGCTTAAGATTGCATATGAGAGTACACGAGAAAACTGATAGTAGAGGATTAAAAGAATGTTCGTGTCAAGTATGCGGTGAAAAGTTTCCAAACCACTCGACACTTGTTATACATAGAAATCGAGTTCACAAGGATGGTAGACAGTATACATGTCACATATGTAACAGATCAATGATCTCGACTAGATCATTAGAATGGCATATGTCTCATATACACAATGAGTCTCTTCCTGGTGTTGTAAAAGAAGACACGGATGGAGCActggaaaagaaaagagtgTCATGTTATCACtgtaataaaacatttaaaacaGAAATGATTTTAAGAACGCATATTAAAAACACTCATATGGAGAAAGATCCGATGAAGTGTTTAGATTGTGAATTAACATTTACTTCTGAAGTAAGATTAAGACACCATATGATGGTGACTCATAACAGATTAGAAGGAACATTACCGTGTCCACATTGTCCGAAGAGATTTGTGAATCAGCTCAGGTTGAAGACACATATGATATCTCATTCTGAAGAGAGGCCATACACGTGTGAAATTTGTGGATTTAACTTGAAAACGAAAATACAATTGATTAAACATCACCAGAATAGACACAGTGATGAAAGACCGTTGCAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGCGCTCTTGTATGTCATGAAAGGACTCATACTAATGAACGACCATACTCTTGTAGTGTGTGTAGGCAacgttttaaatatttagGTGACAAAAACAAACATGAGAGAAGACACGAAAGTTTAGGAGGATCTGGATTCAAAAGAATAGTACCTGggagaaatattaaacctaaAGTCCAGGAAGATTCTTCCTGTTCTGAGCACGAACAAGAAAGTTTAACTAATGCAGAGCATCAAATTGTCGAGGGCGAATACGAAGAGCAAACAGATCAACAGTACGAGGAAGAACAGATAGTTAAGTTTGAAGAACAGGAAATAGTAAAGTTTGAAGAACAAGAAATAACTGAAGAATATGAACAAGTATATGAACagGAATATGAAGAAACGTCTAGAGAAGCTTCGGATGCAGCGGAAGTTATAATGAACATGGAAGATACCACTGTTTATACTGAAGAAGTAACGGCGGACAATATTGAACCCGCAGAAATAATAACAGATGAAATGATGACAAATGAAATACTACAATCAGGTGCTGTAGTTCATTTGCAGCAAGAAGATGATTCAGGAAAAATCCAAGTGATCCCAGTTATGCTGTCTTTACCTGATCTGTCTGATGCAAATACAGAGGTCAATTTAGCTACAGCATCtattatgtataataattga
Protein Sequence: MQRIEINNKDHNYSEVKPDNFESSDSNSQNAYDSDIKPLCKSTKETFGQVKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKKLSILEQTKQELKKYCRTCAGLKFPLVDIFSEKGIQMRLSQQIKHLEEINSYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHFTLTETATRNLEAKKMQSVERIEKHVENIVEDNFLNPSTSKEHNEEVLVQKVPEDIPVKDNLHCIKIGKVNVEELEKPEVEVFEEMIIEENSDNESIEEFDPDDPPFQPDSSDAAESDDEVVVQTPAVKRRNIQKENIPRQYPPSMFLCDYNSAPDNESTDCNQTTYKYDSSLKAYIKIEDTEDNNHSCEPQNIIRTETACNAESTKESTKQPNILKRRLLLQTRKDLSEETDENQSGVSDKNGGHKDFKVQKLDVNNSLNINSNQEDGIMYVTVKGSKPNEILLVKVKKMDKPFEKKDDKCLGKKPFEIKPMDKIFKRYETLVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHASISLPIKSEETQTRYFKRNESQDSQKFTPHAENESTANVQFIKEEDDCTPKIENDSTDTVEPEKEKSANEKSYVNTEEYLSRLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLARILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNNLPDLIDESQPADYIPEENYLECDYCPETFASKDILEEHLKMHDYKIMHFCEDCMEEFPTNKAKRNHSVVCIKKLLCKYCEVMLDSKGKKRQHEQKHCDNMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEDTDGALEKKRVSCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKPKVQEDSSCSEHEQESLTNAEHQIVEGEYEEQTDQQYEEEQIVKFEEQEIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIEPAEIITDEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_01123216;
80% Identity: -