Olig000828.1
Basic Information
- Insect
- Osmia lignaria
- Gene Symbol
- bab2
- Assembly
- GCA_012274295.1
- Location
- NW:2670549-2686341[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-13 7.2e-10 37.6 0.0 1 39 389 428 389 432 0.90 2 4 4.1e-13 8.2e-10 37.4 0.1 2 39 444 481 443 484 0.94 3 4 4e-19 8e-16 56.7 0.0 2 45 499 543 498 543 0.97 4 4 5e-18 9.9e-15 53.2 0.0 1 42 550 592 550 593 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAATTACCAATCAAACATGACGTCCGTTTTCCACCAACTCCTTCAAACGGAAGCCTTCGTGGACGTCACGCTAGCGTGTAACGAGGCTTCCTTGAAGGCGCACAAGGTGGTATTGTCAGCCTGCAGTTCCTACTTTCAAAAGCTTCTGCTCTCGAACCCGTGCAAGCATCCGACAATCATCATGCCACAGGACGTTTGTTTCAATGATCTCAAGTTCATCATTGAGTTTGTCTACAGGGGCGAAATCGACGTGTCACAGGCGGAACTTCAGTCACTGTTGAAAACAGCCGATCAGCTCAAGATCAAGGGTCTCTGCGAGGTTCCGGAAAGCAGAGACGGTCCACCATCAGTTAGTCTGAGTTCGCCACCAAGAGAACCCGGCACTCctagaataaatttcaccaAACTGAAACGACACCATCCGAGGTACAAGAGAGCCAGAACGAGCTTTGAGCCTCGCGCGACAGATTCAAGGCACTACGACAGATACAAAGAAGAGGAGTCGAACGAAAATTACAATCGAGAGAACAAAGAGaaCCACAGGGATTGGCAAGCTGAAGATGAAGAGTGTACGGAAGGAACGACCGCAGCAGTAGCTCTAGAAACTTGCCAGcgtaataataacaacaataatattaacaatagtaacaacaacaataataacgGTAGTAATAGTAGCAACAGTAACGGCACCAACAATAACAACGGTGACATGTTTTGTCATACAGGACTCGGTCATTACGGACACCATCCGGATCCTGGAGACGTCGATCTACCTCCAGAGACCCAACCTACACCACCCAGTGCAACGTTAGTCGGTACGACGATCACCCATCTGAGAGATCCGGATCATCATGCGACAGAGATCCAAAATTGTGACAGTGTAAAGATCAAGTTCGAAACGTTACACACCATGGATTCGTCGGATACGATCGACATCGACAGCCACATGTCGGACCGGGCGAGCGTCAGTTCAAAGAACGCGGCCGACAACGACAACATGATGATGATCACCCCGGAACTACTCGGTCTGATGCCTTCTGGAAGCTCGGTTCACTCGGATTCCGGCGAGAACAACTCGAGGGGCCATTCAGGCCAGTCCAGTTCTCACCATCACGGCTCCAAGTCGTGGACCCAGGAGGACATGGACGCCGCGTTGGAAGCGTTGCGAAACCACGACATGAGCCTGACGAAAGCCTCTGCAACATTTGGTATACCGTCGACGACGTTATGGCAACGAGCGCATCGATTAGGTATCGACACGCCAAAAAAAGACGGTCCAACTAAGTCGTGGAGCGACGAGAGTTTGAACAACGCTCTCGAAGCACTGCGAACCGGTACGATCTCGGCGAATAAAGCGTCGAAGGCGTATGGCATACCTTCCAGTACGTTGTATAAAATCGCGAGGAGGGAAGGCATCAGACTGGCCGCGCCATTCAACGCGAGTCCTACCACTTGGTCGCCCGCTGATCTCGATCGCGCCCTCGAAGCAATCAGATCCGGCCAAACGTCAGTGCAAAGAGCGTCCACGGAATTCGGCATACCGACCGGCACGCTATACGGTAGATGCAAGAGGGAGGGCATCGAACTTAGCAGGAGTAATCCTACGCCCTGGAGCGAGGACGCCATGACGGATGCCCTCGAAGCCGTCAGATTAGGACACATGAGCATCAATCAAGCTGCTATTCACTATAATCTACCATATTCTTCTTTGTATGGTCGTTTCAAAAGGGGGAAATACGAAGAGCCAGCTGTTGGTGACTTGTCGCAAGACGGCAGCAATCCTCATTTCCATCAGAGTCCAACTCAGAATCATTCATCGGCGGTTCCGGATCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTSFEPRATDSRHYDRYKEEESNENYNRENKENHRDWQAEDEECTEGTTAAVALETCQRNNNNNNINNSNNNNNNGSNSSNSNGTNNNNGDMFCHTGLGHYGHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHHATEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTDALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPTQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01122540;