Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:8857899-8902843[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.5e-05 0.00095 19.9 1.5 1 23 145 167 145 167 0.98

2 20 0.88 54 5.0 3.9 1 23 173 195 173 195 0.97

3 20 1.9e-06 0.00012 22.8 4.3 1 23 201 223 201 223 0.99

4 20 0.00041 0.025 15.4 0.2 1 23 229 251 229 251 0.99

5 20 0.0005 0.031 15.2 0.6 1 23 403 426 403 426 0.95

6 20 0.28 17 6.5 0.0 2 23 437 459 436 459 0.88

7 20 0.25 15 6.7 0.1 3 23 520 540 518 540 0.96

8 20 0.0058 0.36 11.8 0.5 1 23 552 574 552 574 0.97

9 20 0.026 1.6 9.8 0.3 1 23 583 606 583 606 0.92

10 20 4.9 3e+02 2.6 0.2 1 23 611 634 611 634 0.91

11 20 1.1 66 4.7 1.4 2 23 708 729 708 729 0.96

12 20 0.017 1.1 10.3 0.1 1 23 734 757 734 758 0.94

13 20 3.3 2e+02 3.2 0.0 2 23 822 845 821 845 0.83

14 20 0.00071 0.044 14.7 1.3 2 23 861 883 860 883 0.96

15 20 0.077 4.7 8.3 1.0 1 23 892 915 892 915 0.93

16 20 0.0027 0.16 12.9 0.1 2 23 1105 1127 1104 1127 0.96

17 20 0.14 8.4 7.5 0.3 1 23 1137 1160 1137 1160 0.96

18 20 2.3 1.4e+02 3.6 0.4 2 23 1173 1194 1172 1194 0.94

19 20 0.88 54 5.0 0.1 2 23 1203 1225 1202 1225 0.93

20 20 0.2 12 7.0 3.0 1 23 1232 1255 1232 1255 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.5e-05	0.00095	19.9	1.5	1	23	145	167	145	167	0.98
2	20	0.88	54	5.0	3.9	1	23	173	195	173	195	0.97
3	20	1.9e-06	0.00012	22.8	4.3	1	23	201	223	201	223	0.99
4	20	0.00041	0.025	15.4	0.2	1	23	229	251	229	251	0.99
5	20	0.0005	0.031	15.2	0.6	1	23	403	426	403	426	0.95
6	20	0.28	17	6.5	0.0	2	23	437	459	436	459	0.88
7	20	0.25	15	6.7	0.1	3	23	520	540	518	540	0.96
8	20	0.0058	0.36	11.8	0.5	1	23	552	574	552	574	0.97
9	20	0.026	1.6	9.8	0.3	1	23	583	606	583	606	0.92
10	20	4.9	3e+02	2.6	0.2	1	23	611	634	611	634	0.91
11	20	1.1	66	4.7	1.4	2	23	708	729	708	729	0.96
12	20	0.017	1.1	10.3	0.1	1	23	734	757	734	758	0.94
13	20	3.3	2e+02	3.2	0.0	2	23	822	845	821	845	0.83
14	20	0.00071	0.044	14.7	1.3	2	23	861	883	860	883	0.96
15	20	0.077	4.7	8.3	1.0	1	23	892	915	892	915	0.93
16	20	0.0027	0.16	12.9	0.1	2	23	1105	1127	1104	1127	0.96
17	20	0.14	8.4	7.5	0.3	1	23	1137	1160	1137	1160	0.96
18	20	2.3	1.4e+02	3.6	0.4	2	23	1173	1194	1172	1194	0.94
19	20	0.88	54	5.0	0.1	2	23	1203	1225	1202	1225	0.93
20	20	0.2	12	7.0	3.0	1	23	1232	1255	1232	1255	0.97

Sequence Information

Coding Sequence: ATGTCCAGAAGGAAGCAGGCGAAACCTCGATCTCTGAAACGAGACGAAGAGTGGGACGAGGGAAACGAGCAGAATGTCCTGGAGGTAACCGAGCATGATAATGAAACAACGGGAATTAAACAGgacgaggaggaggaggaggaagaggaggagctgCAGAGAGCTTTCAGTCGTCATTCCGAGGAGTATCTCCCAGAGGGAAGACCGTCTTCGATTCAAGGAGCAGACCTGGAGAATCAGAACAGCCTCGACAGCGAAGTCTTGGGAACCGGAAGTTCGTCGTGGCAGAGCGAGGATGGCGGGCCAAACTCGCGACGCGGAGGTGAGACCCCGTCGTCTTGCGCGACGCCGACGTCGGTCAGCTTTCCGTCGGAACCTGAAGTGGACGCCGACGTCGGTGTGAACCCAGATGGGAATAACGTAAACGCGCCTTATCCTTGTCAATTTTGCGATCGCACCTTCCCACGGCTGAGCTACTTGAAGAAACACGAACAGAGTCACGGCGATCAGATGCCTTATAGATGCAGCTGGTGTGCCAGATTGTTCAAGCATAAACGCAGCAGAGATAGACACGTGAAACTTCACACGGGAGACCGAAGATATCGATGCACGCACTGCGAGGCTGCTTTCTCCAGGAGCGATCATCTGAAGATCCACATGAAAACCCACGACACCCAGAAGCCGTACCAATGTACAGCCTGCTCGAGGGGATACAACACGGCGGCCGCGTTAACGTCTCACATGCAGTCGCACAAAAAGCATCATCAGTCTCAGGGAACGACGAAACTGCAGCAGGAGGTGGATTACGGACGGAGGAGCGTCTCTTCTCACAGCACATCGTCGCCTCCGGTTCCGAGTTCCCCGTCGCCCTCTTTAAATCTCACCTTGAATCCCAAGTCCGGATTGAAGAGTTCGCAAGGCAGCTGTTCCACCACACCGATCTTGACCTCCCCTCTGAAGCTCGCCTGCATGTACTGCACCAGAGACTCGTTCAGCTGCATGCAACAGCTTCAGATGCACGTGCACACGATGCACCAAGCGATTTTGAGCGGAGAGAGCGTCGCTGTGTCGCCTTCGCCTAACAGAAGCAACGAGCAGATCGCTTATCAGCGTGACAAAACGTTGGACCGACCCGAAGGATCCTCTAACGATCACGAGAGGAAGTATCAAGAGGATTCACAGCGGAAGGATCATTACGAGAACGCGTTTACCTGCAATCAGTGCACCATGAAGTTCTCCACCTTGGGTTCTTTGAGGGATCATTTGGTTTCTATACACAGGACCGACGGGTTCGGTTCTACTTTGATGATGTGTCCCTTGTGCGGCATCCCTTGCACCTCTGCAGCAGCCTACGCGGAACACTACGTCCTCCAACACTGTGAAAATCGACGGGTAGATCCTTTGGATGGTCGAGAGTACGTGGGTTTGAAATTGAATGGCACTTACGACTCGAAGAACAACAGAGGTCAGAAGTGTAGGGAGCAGACTCCGTCCGAGCCAGCTGATCTGACTAATAAACATTCTACCGAGAGTAGTTACACCGCTGGAACTCTGTTCTGCGGTCAGTGTGGCGCCGCTCTGAAGGACTTTGAATCGTTCAGGGAACACCTGGCCAGGCATCTTCAAGCTGACCATAGAAACGACGTCGTCAGACATCCTTGTCCCAAGTGCGAGGCTACTTTCCAGGACAAGGAGGACATGCTGGTACATCTGACGAAGCACTACCTCGGTCAGGTCAGCAAGGAGTACGCGTGTGGAGCGTGCAAGAAGCTCTACCCTCATCCTGATCTTCTTCAGAGACATCTGCTCGATAGCCACGCGCATCATTTGTACAGGTGTGCCCTGTGCAGGGACACCTTCGACACCAGAGTAGCTATACAAGTTCATTTCGCTGTGAAACACAGCCAGGAGTGCAGGATCTATCGGTGCAACGCTTGTACCGTTTCTAACAACGAGAATTCGCCCGGTAACGCTCCTGGAGAGGGGAAGAGCTTCTTCAGGAGCGAATCTGAGATGGCGAACCATGTGAGGAACGTGCATGCACCACCTACGATATCCAGCAAAAGTCCAGCAGCTACCAGTCCAGCTTCCACTCCTGGGATCACTGCCTCCTCTGGACCCAGGTGCGTTTTCTGCGGAATCTGTTGCGGCTCGGAACTGGAGCTGCAACTTCATCTGGCAAGCCATTCGGCTAGCCTGTACAGGTGTCCTGTATGCAGGGAGGGATTCGCTGTAGAATTCTTGCTGGATAGACACATCGCTCAAGCTCATCATTCCACTGACCATCAAGCCACTGTCAGAAGCAGTTCCAGAGAGAATGGAAGGATTGCTAGAACGTCGAGATTGCAGGAAGAGTCAAAGTCCCAGAAAAGGGGTCGTTCGCCAGCGTCCAGCAACAACAACACCCTCAACCAACGTGACAACAACAATAAACGTCCCAAGTACATCGGCTCAGGTTCCCAACAGTGCGATCTCTGCGAGAGAGGAGAGTTTGCCAACGAAGCAGAGCTTCAGGCGCACAAGAAGGTTGCTCACGCTCCAGCTAAGTTACAAAACAAATCCTTGTCGAACCTCAGTATGACCTGCGCCTATTGCGGCGAGATGTGCCGATCACGGACCGAGCTTGAATCTCACACCAGGATCCAACATGCTTCCAACGAGCCTGGAGGACGTCACAAGTGTAACATCTGCGACGAGGTGTGCCCATCGGGAGCCACCCTTGCGGAGCACAAACTACAGAAGCATTGCAAAATCCAGTTAAGCGACACCTGTATCGTTTGTCGAGGAAGCTTGACCTCGGAGTCGCAGTTCCTCGAGCACGTTCAGAGACACAGCCTGGAGAACGTGGATCCTCAGCAACGGCTCGACGGTTCGCTTCCACACTTACCAGCAGCTTGCGTCGTTTGCAGACAAACGTTGATCAGCGACCTAGAGTGTCGTCTCCACGCCAGGCATCATCTCAGGGCTTCCACTGGCTCTCACAGTGTAGGATCTAGTCCCAGTCCCAATCAAAAGAGTCAGAATCCAACTTGTTGCCTTTGCCTGAGGGATTATTCCGTAGACGACTTCGTCAGTCTGCCTCCAAGTCACATCAGCGGTGGAGGACAGTCTCTGAGGGTCTGCAAATCGTGTTACATTCGTCGCTCGCAAGGTCTACCGATCTTGAACTCGCCTTACGAATCTGCTAGACCAAAGTGTGACAGAACTTGGACATCGAGCAAGGAGCCTCCCATGGAAGGCTCCAGGGACAGGTGGGAGGCTGAGCGTTGCTTCAAGACTGAGGACAGGGTGAACGAGACGAATGACAGTATCAGGTGCCAGAATTGCGGGGTGAAATTTGAAGACCCTGAAGAAGTAGAGAAGCATAGGATGGTGGAGCATGAGAAAAATGGGCCTGGATCGAACACGTACACCTGTATACAATGTCAGATGTCATTTCCAACAGAAGCCAAGATACAGCAACACGTGAGAAAGGAACACCTGGAGGCGTCAGGGAAAGCTTCTGTCGATGCACTGAGGTGCCATTTATGCCTCTTCGAAGCTAGCAGTCCCTTACAACTGCAGAGTCATTTGATAGAACACACTTTCGCTGGATGTGCTGCTCTTAGCTGTTATATTTGCCAGTCTCTGTTCACTGCTCCCATTGGGCTTCAGAATCACATGTTACAAGAACATGGTTTGGGTGCTCGCCCCTACGACTGCTCCAAGTGCACTCTCAAATTCTTCTTCAGGGCTGAGTTGGACCATCATGTGCTGACGTTTCATCGACCTGGAGACGCGTCTTCGCCTACTGAAAACGTGCAGAATGTAAACGAAACAAAAACAAGGGACACTGAAGAACGAATATGCGATGAGGAGGTCACAGTGAAGGAAGAACTGCTTCCAGACGCTGCagaggaagacgaagaaatTAACGTCGATGAACAAGTGGAACAAGATGATCCAGAAACAGATAAACAATCAGACGTGGATAAGAAATTAAAGACAGAAATAGAGGGTGATTCTATTACTGAGAAAATGGATTCGTGA
Protein Sequence: MSRRKQAKPRSLKRDEEWDEGNEQNVLEVTEHDNETTGIKQDEEEEEEEEELQRAFSRHSEEYLPEGRPSSIQGADLENQNSLDSEVLGTGSSSWQSEDGGPNSRRGGETPSSCATPTSVSFPSEPEVDADVGVNPDGNNVNAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCTHCEAAFSRSDHLKIHMKTHDTQKPYQCTACSRGYNTAAALTSHMQSHKKHHQSQGTTKLQQEVDYGRRSVSSHSTSSPPVPSSPSPSLNLTLNPKSGLKSSQGSCSTTPILTSPLKLACMYCTRDSFSCMQQLQMHVHTMHQAILSGESVAVSPSPNRSNEQIAYQRDKTLDRPEGSSNDHERKYQEDSQRKDHYENAFTCNQCTMKFSTLGSLRDHLVSIHRTDGFGSTLMMCPLCGIPCTSAAAYAEHYVLQHCENRRVDPLDGREYVGLKLNGTYDSKNNRGQKCREQTPSEPADLTNKHSTESSYTAGTLFCGQCGAALKDFESFREHLARHLQADHRNDVVRHPCPKCEATFQDKEDMLVHLTKHYLGQVSKEYACGACKKLYPHPDLLQRHLLDSHAHHLYRCALCRDTFDTRVAIQVHFAVKHSQECRIYRCNACTVSNNENSPGNAPGEGKSFFRSESEMANHVRNVHAPPTISSKSPAATSPASTPGITASSGPRCVFCGICCGSELELQLHLASHSASLYRCPVCREGFAVEFLLDRHIAQAHHSTDHQATVRSSSRENGRIARTSRLQEESKSQKRGRSPASSNNNTLNQRDNNNKRPKYIGSGSQQCDLCERGEFANEAELQAHKKVAHAPAKLQNKSLSNLSMTCAYCGEMCRSRTELESHTRIQHASNEPGGRHKCNICDEVCPSGATLAEHKLQKHCKIQLSDTCIVCRGSLTSESQFLEHVQRHSLENVDPQQRLDGSLPHLPAACVVCRQTLISDLECRLHARHHLRASTGSHSVGSSPSPNQKSQNPTCCLCLRDYSVDDFVSLPPSHISGGGQSLRVCKSCYIRRSQGLPILNSPYESARPKCDRTWTSSKEPPMEGSRDRWEAERCFKTEDRVNETNDSIRCQNCGVKFEDPEEVEKHRMVEHEKNGPGSNTYTCIQCQMSFPTEAKIQQHVRKEHLEASGKASVDALRCHLCLFEASSPLQLQSHLIEHTFAGCAALSCYICQSLFTAPIGLQNHMLQEHGLGARPYDCSKCTLKFFFRAELDHHVLTFHRPGDASSPTENVQNVNETKTRDTEERICDEEVTVKEELLPDAAEEDEEINVDEQVEQDDPETDKQSDVDKKLKTEIEGDSITEKMDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684951;
90% Identity: -
80% Identity: -