Obic011737.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- bab1
- Assembly
- GCA_907164935.1
- Location
- NC:7964052-7971642[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-14 1.9e-11 43.9 0.1 4 45 340 381 337 381 0.92
Sequence Information
- Coding Sequence
- ATGGCGAGCACATCGCAACAATATTGTTTACGTTGGAACAATCATCGTTCGAATCTGCTGACGGTATTTGACGAGCTACTTCAAAATGAGTCATTCACCGACGTGACCCTGGCGGTCGACGGAGGCGCCTCAGTGAAATGCCATAAGATGGTCCTGGCAGCTTGTTCCTCCTATTTCCAAACCCTCTTCATCGATCTTCCATGTAAACATCCGATCGTGGTATTAAAGGATGTGAAGTACTCTGAAATTAAAGCGATCCTGGAGTACATGTACCGGGGCGAGGTGAACGTGGCCCAGGAACAGCTGGCCGGATTGCTTAAAGTCGCGGAAGTATTGAAGGTGAAGGGCTTGGTGGAAGAGAATGGTTCGCAAAGTCGTCGCGAAGAGGTGGAGACCTCGATGTCGCCTCCACCAGCGATAACCACAAGCACGACGAGTAGCGCGGCGCACAGCAGTGGTCTCGCGTCACCTCCGCATTCCACTGGCACCTCGTACGTATACGGCAGATCGCCAGTGGATCGAACCAATCAAATGCCATTACCCATGTGGCCACTTTGTCTGCCCATTTCCCATTCCAGTTCTAATTACCAAACGACCTCGCATCCGCAGCATTCCTCTACTTTAACCGGTTCCTACGACAATGGCTTTGAAACGTCCCCCCTGAAACGGAAGAAGCTTTCCAACATATTAATGAACAGGGACACACCGATCCTACGAACGGTGCTAGGTCAAGGTCATGCAGACAGCTCTCAGGGTATTCCTTTGTTACACCCAGACAGCCATGAAAACCACTTTAGAAACAATAGTAATGGATCATCGAACGACAACGACAGACGCAGTAGTACCGATATACCTCACGGAGAACCCGCGCATAGTCCTTACACCGATGCGTCTATGATGGACGAGGACGATAAGCAGCCATCGCCGCAGTCGTATCCTCCGGATAAGCCAggGATCGTCAACTATGTACCGGCGCAAAAGCCAGAATGGAAGCGATACAAGCAATACACGAGGAAAGACATAATGTCCGCGATCGAAGCGGTTCGTACAGGAATGAGCGCGTTGCAAGCGGCACGTAAGTATGGAGTACCTTCGCGAACCCTTTACGACAAAGTAAAGAAATTAGGTATTACCACGTCACGACCGTTCAAACGCGGTTCGAACGGTAGTGGCGCCTGTTTTCCGTATGGAATTGGCGGTAACGCAAACGGCGGCATCTATAGTGGCGCCCTCTCcgaaaatgaaaacgaaaataGCAGTGCGATAGACAGCCCTGGCTCGATTCTCGATGCATATAAGGCCAGAGATGGTCCTATGGATCGAGATATGTTGGACGTCACTCGTTGTAGCTCCACTCCAATTATCCATTCTGTAAAACAACAGAGCAACGAAGATCAAGTAGAAGATCTTTCCGTAACTCGCAAGTCGGATGTACGCGTGATAGTCCCACCAACGTCGGTAGTCAAAAATGAAGAAGACGTTGATTAA
- Protein Sequence
- MASTSQQYCLRWNNHRSNLLTVFDELLQNESFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYSEIKAILEYMYRGEVNVAQEQLAGLLKVAEVLKVKGLVEENGSQSRREEVETSMSPPPAITTSTTSSAAHSSGLASPPHSTGTSYVYGRSPVDRTNQMPLPMWPLCLPISHSSSNYQTTSHPQHSSTLTGSYDNGFETSPLKRKKLSNILMNRDTPILRTVLGQGHADSSQGIPLLHPDSHENHFRNNSNGSSNDNDRRSSTDIPHGEPAHSPYTDASMMDEDDKQPSPQSYPPDKPGIVNYVPAQKPEWKRYKQYTRKDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSGACFPYGIGGNANGGIYSGALSENENENSSAIDSPGSILDAYKARDGPMDRDMLDVTRCSSTPIIHSVKQQSNEDQVEDLSVTRKSDVRVIVPPTSVVKNEEDVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071088;
- 90% Identity
- iTF_01122535; iTF_00963778; iTF_00962596; iTF_00963109; iTF_00964389; iTF_00963280; iTF_00961745; iTF_00964563; iTF_00963927; iTF_00961914; iTF_00962426;
- 80% Identity
- iTF_01122535;