Obic005202.5
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- bab2
- Assembly
- GCA_907164935.1
- Location
- NC:3713477-3728093[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-12 2.2e-09 37.3 0.0 1 39 505 544 505 548 0.90 2 4 2.5e-12 2.5e-09 37.1 0.1 2 39 560 597 559 600 0.94 3 4 2.5e-18 2.4e-15 56.4 0.0 2 45 615 659 614 659 0.97 4 4 3.1e-17 3e-14 52.9 0.0 1 42 666 708 666 709 0.97
Sequence Information
- Coding Sequence
- ATGTTCCACTCGCGTTCCTTCCGCTTAATTATCCTCTTTCGCGTTAATCGTCTGTTTGCTACACGTAGCACGTGCCGTTTCGCATGCTTCGTCGTCGCGATTCGCGCGGAAGGAAAGTGCGCGAGAAAATTGATCGATCCGCTATCGATTTGTCGCCATTCCTCGCACGTTATCGCTCATTATCAGCTTGTCTTCGAGCGTTACGTGCCGGTTAACCCAATTTCTAGATATCAACACGCTCGTTCGCAATACTACCTGTACTGCGCGACATGTAACTTGCGAAACTTTGAAAACGCGACACGCAGCGCGTGCGCGTTTAACGCGCAATTAACGAATAACAGCGGCGGTATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAATTACCAATCAAACATGACGTCCGTTTTCCACCAACTCCTTCAAACGGAAGCCTTCGTGGACGTCACGCTAGCGTGTAACGAGGCTTCCTTGAAGGCGCACAAGGTGGTATTGTCAGCCTGCAGTTCCTACTTTCAAAAGCTTCTGCTATCGAACCCGTGCAAGCATCCGACAATCATCATGCCCCAGGACGTTTGTTTCAATGATCTCAAGTTCATCATTGAGTTTGTCTACAGGGGTGAAATCGACGTGTCACAGGCGGAACTTCAGTCACTGTTGAAAACAGCCGATCAACTCAAGATCAAGGGTCTCTGCGAGGTTCCGGAAAGCAGAGACGGTCCACCATCAGTTAGTCTGAGTTCGCCACCAAGAGAACCCGGCACTCCTAGAATAAATTTCACCAAACTGAAACGACACCATCCGAGGTACAAGAGAGCCAGAACGAGCTTTGAACCTCGCGCGACAGATTCAAGGCACTACGACAGATACAAAGAAGAGGAGTCGAACGAAAATTACAATCGAGAGAACAAAGAGAACCACAGGGATTGGCAAGCTGAAGATGAAGAGTGTACGGAAGGAACGACCGCAGCAGTAGCTCTAGAAACTTGCCAGcgtaataataacaacaataatattaacaatagtaacaacaacaataataacgGTAGTAATAGTAGCAACAGTAACGGCACCAACAATAACAACGGTGACATGTTTTGTCATACAGGACTCGGTCATTACGGACACCATCCGGATCCTGGAGACGTCGATCTGCCTCCAGAGACCCAACCTACACCACCCAGTGCCACGTTAGTCGGTACGACGATCACCCATCTGAGAGATCCGGATCATCATGCGACAGAGATCCAAAATTGTGACAGTGTAAAGATCAAGTTCGAAACGTTACACACGATGGATTCGTCGGATACGATCGACATCGACAGCCACATGTCGGACCGGGCGAGCGTCAGTTCAAAGAACGCGGCCGACAACGACAACATGATGATGATCACCCCGGAACTACTCGGTCTGATGCCTTCTGGAAGCTCCGTTCACTCGGATTCCGGCGAGAACAACTCGAGGGGCCATTCTGGCCAGTCCAGTTCTCACCATCACGGCTCCAAGTCGTGGACCCAGGAGGACATGGACGCCGCGTTGGAAGCGTTGAGAAACCACGACATGAGCCTGACGAAAGCCTCCGCAACATTTGGTATACCGTCGACGACGTTATGGCAACGGGCGCATCGGTTAGGTATCGACACGCCAAAAAAAGACGGTCCAACTAAGTCGTGGAGCGACGAGAGTTTGAACAACGCTCTCGAAGCATTGCGAACCGGTACGATCTCGGCGAATAAAGCGTCGAAGGCGTATGGCATACCTTCAAGTACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGACTTGCCGCGCCTTTCAACGCGAGTCCTACCACTTGGTCGCCCGCTGATCTCGATCGCGCCCTCGAAGCAATCAGATCCGGCCAAACGTCAGTGCAAAGAGCGTCCACGGAATTCGGCATACCGACCGGCACGCTTTACGGTAGATGCAAGAGGGAGGGCATCGAACTTAGCAGGAGTAATCCTACGCCCTGGAGCGAGGACGCCATGACGGATGCCCTCGAAGCCGTCAGATTAGGACACATGAGCATCAATCAAGCTGCTATTCACTATAATCTACCATATTCTTCTTTGTATGGTCGTTTCAAAAGGGGGAAATACGAAGAGCCAGCTGTTGGTGACTTGTCGCAAGACGGCAGCAATCCTCATTTCCATCAGAGTCCAACTCAGAATCATTCGTCGGCGGTTCCGGATCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MFHSRSFRLIILFRVNRLFATRSTCRFACFVVAIRAEGKCARKLIDPLSICRHSSHVIAHYQLVFERYVPVNPISRYQHARSQYYLYCATCNLRNFENATRSACAFNAQLTNNSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTSFEPRATDSRHYDRYKEEESNENYNRENKENHRDWQAEDEECTEGTTAAVALETCQRNNNNNNINNSNNNNNNGSNSSNSNGTNNNNGDMFCHTGLGHYGHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHHATEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTDALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPTQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01122540;