Osur011841.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01007023.1:675-2824[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00045 2.8 8.2 0.1 23 54 172 203 166 203 0.90 2 4 0.00013 0.79 9.9 0.1 21 45 226 250 215 256 0.91 3 4 0.8 4.9e+03 -2.2 0.0 27 43 288 304 278 312 0.75 4 4 7.2e-06 0.045 13.9 0.1 25 53 314 342 304 343 0.89
Sequence Information
- Coding Sequence
- atggaaaatatttgcTTTCAATGTAAACAAGAATGTGTTGGACCGTCAAATAGGTTAGTACAGGACACTTGTGGCCACAAAAAGTGCAGAAAATGTCTTTTGAGTGACGAAGAAAAATGTAAGCAATGCACTGAAAAGGAAATAAAAGAGAATTTCATTGTTcctgaaaatgtaataaaatgtgaaaCGGGCGTAATAAAGTGTAATGGAAATTTATCAGAAAAGAAACTTTCACTGCCAACAAGTTCTACAACATCGAATGACAAATTAAGAAAATCAAATACGAAGAATAAACGCCCTTACAAGCCAATTAGTATTCCAAGTCATATTACAATGGTTATGGATCCATTGATGTACAATTGCAgcatttgtaataaaagtttCACAACAAAAGCTCACGTTAAATATCATACTTATTGTGCTGGAGTTAAGCCACATAAATGCGAAATCTGCAATAAAGAATTTGTTCTTAAAACCCATTTCGATGTGCATATGATGAAACATAATGGTGCAAAACcacataaatgtaatatttgcCAAAAATCGTTCAGTGAACGAAGTAAATTAAGTcgtcatttaaaattacacaCAACTGTTAAGCCGTATGTATGTGCTGAATGTGGAAATGCATATAGAAGTAGAGAATCGTTACGTTTACATTCAATTATTCATAAAGGCGAGAAACCGTATGCTTGTAAATTGTGTTCAGCACGATTTAATCAttcttcaaatttaaataagcatTTAGCCAGTCATTCAGCGGAAAAAGTGCACATGTGCGACCAATGTGGAAAAAGATTCAAGTTAAAATGGGCCTTATCTGTTCATAGAAGGTCGCATTTGCCTGTTAGACAATTTGAATGTGGAATGTGTTCAAAAGCGTTCGTGAATAATAAGGATTTGCAAAGGCACAGTCTCGTACACGCTGaAACAAAAGGTTTTACGTGCAGTATTTGCAATACAAGTTTTCGTCGCAAAGACAATTTAAATCGTCATTTGAAAAACACTCACCCTGGTAAAAAGGGTgaagttataaaaaatattgtaaataaaccTACAGTAGTACATCGTATAAGGCCCGTAGATAATCCAAATGCTGTAAATGTGATTAAATCACCGCCAGGTTTTACAAGAAAACTAGAAAATCCCCCAGTAAAAATTGATTCACGACCAAGTACTGTTATTAATGGACCGATTAAACTTGCATTTAAAACTCcagcatttaaaaataattataacattaaCATTCAACGTGATTTCGATGGACTATTAAAGTATGCTCCATCGCCAGCTACAAAAAAGCCATATGATTTACTAGATCCAGggaatatttatcaaaaaattttatcaccACAAAGTCCACCACCATCTAGAAATTCTGATATGGATACATCACCATTAAGCCAGAAAATATTATCGAATAATACACCGTTACATTATGAAACATCATTTCAAAATCGTAAACATGCcatgataaaaaatataaaatttaaagttcCTATACAATATACGCAAAATACAAGAAAAGATGAACAAATCAAAGAACCATTGAATGATATTGTGCCATTAAAACCAGTAATGGTAAATGAAGAAATGATTGTAAATGTACAAGTGTTATTGTGA
- Protein Sequence
- MENICFQCKQECVGPSNRLVQDTCGHKKCRKCLLSDEEKCKQCTEKEIKENFIVPENVIKCETGVIKCNGNLSEKKLSLPTSSTTSNDKLRKSNTKNKRPYKPISIPSHITMVMDPLMYNCSICNKSFTTKAHVKYHTYCAGVKPHKCEICNKEFVLKTHFDVHMMKHNGAKPHKCNICQKSFSERSKLSRHLKLHTTVKPYVCAECGNAYRSRESLRLHSIIHKGEKPYACKLCSARFNHSSNLNKHLASHSAEKVHMCDQCGKRFKLKWALSVHRRSHLPVRQFECGMCSKAFVNNKDLQRHSLVHAETKGFTCSICNTSFRRKDNLNRHLKNTHPGKKGEVIKNIVNKPTVVHRIRPVDNPNAVNVIKSPPGFTRKLENPPVKIDSRPSTVINGPIKLAFKTPAFKNNYNINIQRDFDGLLKYAPSPATKKPYDLLDPGNIYQKILSPQSPPPSRNSDMDTSPLSQKILSNNTPLHYETSFQNRKHAMIKNIKFKVPIQYTQNTRKDEQIKEPLNDIVPLKPVMVNEEMIVNVQVLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121955;
- 90% Identity
- iTF_01121955;
- 80% Identity
- iTF_01121955;