Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: RREB1
Assembly: GCA_004796505.1
Location: SSSI01010696.1:9293-15924[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.1e-05 0.0011 19.4 1.0 1 23 83 105 83 105 0.99

2 16 6.1e-05 0.0059 17.1 0.2 1 23 119 141 119 141 0.97

3 16 3.9e-05 0.0037 17.7 6.4 1 23 147 169 147 169 0.98

4 16 0.76 73 4.2 0.1 1 23 235 259 235 259 0.82

5 16 0.01 0.98 10.1 1.9 2 23 265 286 265 287 0.95

6 16 0.031 3 8.6 1.5 1 21 333 353 333 354 0.93

7 16 0.047 4.5 8.0 0.1 1 23 476 498 476 498 0.96

8 16 3.2e-05 0.0031 18.0 1.9 1 23 507 529 507 529 0.98

9 16 0.00054 0.052 14.1 3.1 1 23 535 558 535 558 0.97

10 16 0.00032 0.031 14.8 3.0 1 23 917 940 917 940 0.97

11 16 0.00032 0.031 14.8 0.4 2 23 1148 1169 1147 1169 0.97

12 16 0.082 7.8 7.2 6.3 1 23 1175 1198 1175 1198 0.97

13 16 0.0081 0.78 10.4 1.2 1 20 1226 1246 1226 1247 0.95

14 16 0.0029 0.27 11.8 1.0 1 23 1304 1327 1304 1327 0.96

15 16 0.011 1 10.0 0.4 3 23 1374 1394 1372 1394 0.93

16 16 0.0049 0.47 11.1 5.9 1 23 1400 1422 1400 1422 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.1e-05	0.0011	19.4	1.0	1	23	83	105	83	105	0.99
2	16	6.1e-05	0.0059	17.1	0.2	1	23	119	141	119	141	0.97
3	16	3.9e-05	0.0037	17.7	6.4	1	23	147	169	147	169	0.98
4	16	0.76	73	4.2	0.1	1	23	235	259	235	259	0.82
5	16	0.01	0.98	10.1	1.9	2	23	265	286	265	287	0.95
6	16	0.031	3	8.6	1.5	1	21	333	353	333	354	0.93
7	16	0.047	4.5	8.0	0.1	1	23	476	498	476	498	0.96
8	16	3.2e-05	0.0031	18.0	1.9	1	23	507	529	507	529	0.98
9	16	0.00054	0.052	14.1	3.1	1	23	535	558	535	558	0.97
10	16	0.00032	0.031	14.8	3.0	1	23	917	940	917	940	0.97
11	16	0.00032	0.031	14.8	0.4	2	23	1148	1169	1147	1169	0.97
12	16	0.082	7.8	7.2	6.3	1	23	1175	1198	1175	1198	0.97
13	16	0.0081	0.78	10.4	1.2	1	20	1226	1246	1226	1247	0.95
14	16	0.0029	0.27	11.8	1.0	1	23	1304	1327	1304	1327	0.96
15	16	0.011	1	10.0	0.4	3	23	1374	1394	1372	1394	0.93
16	16	0.0049	0.47	11.1	5.9	1	23	1400	1422	1400	1422	0.98

Sequence Information

Coding Sequence: ATGCAAGGGGTGGTTTTTCTACCTCAAAATCTACAACAGGGCTCACCGCCTCCCAATAGTAATAtagTTACCGATATGGAAATAGAATCCAACCAAACCAAAGACACAATCATGAACCAAAGCAACCAAAGCGATTCAGGCATTTTCTCAACAACCACCAACACCACCATCGACCAAACCGATATATCCGCCCCAAATAATGATAATTCAGACAATCGTAGCGATTGTAGTACACCCGAACGTAAATACGTGTGTCCGATATGTGAAAAAATGCTAACATCCCAACACGATTTCACGCTCCACATTCGATCACATAACAACGAAGTAACCGAATTGCAGGACAATGAAAAGGGCTTCGTTTGTCGCATTTGCAACAAAGTCCTAAGTTCCAGTTCCAGTCTGGATAGGCATGTGCTGGTGCATAGCGGCGAAAGACCATTCCATTGCAAATATTGTGGTGATACATTTACCACTAATGGTAACATGCACCGCCATATGCGTACCCATAAAATGGACAATAATTACGAATCGGATGGCAGTGTAGAGAGTAATACAAGTACAAATTCAAAGACAgaatataacaacaacaagatCGATACGAAATTTAATGGGAAACGGAAACACGAAGATCAAACAGACGAGGAATGCATTAAAAAACGTGAATTACAAGATAACATTATCAACACCGATAATAAACAAGTATTTAAATGTCCGGTTTGTGAACGAGCCGATTTcgattcaattaataatttagaaacacatttagAAGACAATCATCCCGAATATCCAGCCAAATGCGGCCAGTGTAAGCTGATTTTCCCCAACAATAAACTGTTAAATATGCATAAAGCAACCCATCATGATAATAATGTTACAAAACATCCAGTTGTTGGATTTAAAGATTTAACATTCGTCGACTTTTCTAGTGAGAAATTTCCACATATCGCGCGACGTGAATGCGAAATGAATTTGCATAAAGTTTCTAGTGGTTTAAAGTTTCAATGTAAAAAATGTTCACGTGCCTTCCCCTGTTCAAGCTCATTGGAAATACATGAGAAGAATTGCGTACAATCACATGAAACTAGCGGTTTGGACTTGAGTAAAACGAATGAATCGGAAATAAGGCGACTTGAATTCTTTTCCCGTTTAAATTTACAAGACAACTCACCAGAAAAACGTACTTTTATGCAGGAAAGTCCAACAAAGCTGCGGGAACAGCTTGCCAAGGCGATTTGCATAGATTCTTCCAAAGATTTAGCAGATATAcaatcaattttaacaaatattaatttacaacaacaGAAACATACCGGATTAAGTGGCGGTAAAAATTTCGAtacagaaaatgttaaaaatgaaCAACAGGAAGAAGAAACACAAGATTTATTTGCGGTTGAATTtcgtaaaatgaaattacGTGGTGAATTTCCATGTCGATTGTGTACGGCAGTATTTCCGAACTTGAGAGCATTGAAAGGCCACAATCGCGCCCATCTAAATGGCAACAATAATGGCACTTATCACTGCAACATGTGTCCACACTCGTCCATCGACAAAGCGGCCCTAATTCGACATATGCGAACACATAATGGCGACAGACCATATGAATGTTCGCTCTGCAATTATGCTTTCACTACGAAAGCTAACTGTGAACGCCATTTAAGGAATCGGCATGCGAAAAGTACAAGGGAAGAAGTAAAAAAGGCTATTATTTATCATCCATCTGAAGATCCAACCAATGATGACTTGAATAAACTCACGGCCAGAGAAAATGAAGCGAAAAAAATGAATTCTAGTACAGATGCAGGCGATATAAGTCCAGAGAAAATACATTGTTCAACACCAAAATTAGAACGGCCAGAAATTAAAccggaaattttattaaaacaaaatttaccaCCATTAATACCTGACttgcaaaaattaaaaccaCAATTCTTCAACGATATTATacgcaataataaaattaaagagcATAAATTAATACCAAATGGAATACCGTCGCCTCTACcatataattttacacaaaaattacCAACTTCCCCTTCAAAGATACAAGTTAAAAGCTTAGAAActttgaaaaattacgatcATTCCGATGAAGAGTATGTAGAAGAGGAGGAACAGCCAATGGTGTTAGATTtaagtaaaaagaaaattagtgAAGAGAAAAGACGTATTGATATTGATGAAGCCCCTCAAgatttaacgaaaaaatcaCCACCACTCACTCCACAATTTATGGGGGAAATATTTGCTcaacaattattgaaaacaCCACCAAAAATTGATCCCACTGCTTTATATGCCTCACAAATAGCTCGTTTGTATCACAACAGTTTTCAAAATTGGGGCGCATTTCCAATAAATCCTCTATTATTTCCTCCAATGACTCCTACTCTTCCCACCAGCCCTCAAGAGCTGAAGGAGCGCATGCAACGCTTCCAATTGTGTGGTGGTTCTTTTATAGCTGAAGATTTAAAGCATTTTCACAATTTACAACAGCAAAATATGCGTTATAATGGGTTTAAAATGAATGAGAATAAACTGGATGACCGTAATCCACAAATTCCCGACGATTATAAACCGCTTAGTGTCGATACAGGCTTCAGTGATAGTATTAACAAAATGCAAAGTCCATCTAGCAAACCAGATTTGATGCAGTCACCTAATTCCGtgaaaatggtaataaaaaatGGGGTTTTAATGCCGAAACAGAAACAGCGTCGGTATCGTACTGAACGGCCGTTCACTTGCGAGCATTGCTCAGCCAGATTTACGCTTCGATCTAATATGGAACGTCACATTAAACAACAACACCCTCAATTCTGGTCGCAAAGACAACGCGGCAGTGTTGGAAATCCGGGACGTAAGAGTCATTCACTGAAAACGGGCTACTGTGATCTCAGCATACCAAACTATGAAGTACCAAAGACATCTGACTACGAAGACACTAAAGAGCATATCAATGAAAAGCTGAAATTCGCAATTTTGGCACAACAGTTAAGAGCGTCAGCCAATCATccagaaataaaaaaagaggAAGTCGATGAAGAATGTGCTTTGGtaattgatgaaaataatgaCAAAAAGACTGAAGCGAAACACCAAAGATCATATGAAGGCAGCAAAATATTAGAAgagaaattaaatgaatatcaaccacaaaataaagataaaaagaaTGAAGAAAATCAAGATTTAGTTCCTGTTTCGCGTCTATTAGACAATGCATCTCAACAGcaatttaaagaatattttaaacgTGAAGGGGAGGAACAGGAAATTGGTGGTGTTAGTGAGGAAGACGAGGAAGGCTTGGTGGCTAGTGGAAGTACAAGTGAAGGCAATATTTCCGGAACAGATGAAAACAAatCGGAATCTGAAACTGTCGCACCAGTAAAAAAGAAGTCTGCTTACTCCTTGGCTCCAAATCGTGTCAGCTGCCCTTATTGCAGCCGTAAATTCCCTTGGACTTCATCCCTTCGGCGTCATATCTTAACTCACACTGGCCAAAAACCGTTCAAATGCAGCCATTGTCCTCTTTTATTCACCACAAAGTCAAACTGCGACCGACACTTACTACGAAAACACGGCAATTCAGCCACAACCATAACGAACGACACACagaataataattcaaattttcttatacGCAACGTCCCTGAACGACCATTCAAGTGTTCAAATTGCCCGAGCAGCACTTTTTCCACTTACTCCAACTTGAAAAAGCACATCAGTTGCAAACACTCAACAAACGCTCAGGGTGACGATATTAAAGCACAGGGCTACGAAGCGGGCAGTTCAGAAGATGAAAAAATGACAAACGCTGAGAAAAATGAATGGGAGACTCCGGTGTACAGCAAATTAGTACCGGAAAGTGGTCAAGTACAAAATTCTGATTTGCCATTCAAGTGTCATCTGTGTGACGGATCGTTCAGTGATCGCCAAGACGCTTTGGATCATATACGAGACAAGCATGCATCCGAGTACGATTTGCTGATGTCGAAGAATGCATTGGACAGCAATGCAACCACCCCCGACGACACTGCCCATCATGATGACGATGAAAACGAAATACGCGGTAAGTTTCCGGACTATTCCAATCGAAAGGTGATTTGTGCGTTTTGTATGCGACGATTTTGGTCAGCGGAGGATCTGCGAAGGCATATGCGAACGCATACTGGAGAACGGCCGTTCAGTTGCGACATTTGCAGACGTCGTTTCACATTGAAGCACAGCATGTTGCGGCATCGGAAGAAGCATAATTTTGAGAATGACAATAATGTCAGCGATGAGGATGGTAACAATATGCCGCCAAGTTTTGATAAATTCCTTAAAGGCGAGAATAATAATTTGCAGAAACAAGACAAAACAGACGAATCGGATGGTAACGAAGGGGGAgatttaattagtaatttattgGGTATTAGAGATCGTTCGATTATTGACAAAGTATTGGCCGCATCACCTGACGATGCAGCTAAATTATTAGGCGTCAAAAATGGCGTAAAAGAATAA
Protein Sequence: MQGVVFLPQNLQQGSPPPNSNIVTDMEIESNQTKDTIMNQSNQSDSGIFSTTTNTTIDQTDISAPNNDNSDNRSDCSTPERKYVCPICEKMLTSQHDFTLHIRSHNNEVTELQDNEKGFVCRICNKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHKMDNNYESDGSVESNTSTNSKTEYNNNKIDTKFNGKRKHEDQTDEECIKKRELQDNIINTDNKQVFKCPVCERADFDSINNLETHLEDNHPEYPAKCGQCKLIFPNNKLLNMHKATHHDNNVTKHPVVGFKDLTFVDFSSEKFPHIARRECEMNLHKVSSGLKFQCKKCSRAFPCSSSLEIHEKNCVQSHETSGLDLSKTNESEIRRLEFFSRLNLQDNSPEKRTFMQESPTKLREQLAKAICIDSSKDLADIQSILTNINLQQQKHTGLSGGKNFDTENVKNEQQEEETQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKSTREEVKKAIIYHPSEDPTNDDLNKLTARENEAKKMNSSTDAGDISPEKIHCSTPKLERPEIKPEILLKQNLPPLIPDLQKLKPQFFNDIIRNNKIKEHKLIPNGIPSPLPYNFTQKLPTSPSKIQVKSLETLKNYDHSDEEYVEEEEQPMVLDLSKKKISEEKRRIDIDEAPQDLTKKSPPLTPQFMGEIFAQQLLKTPPKIDPTALYASQIARLYHNSFQNWGAFPINPLLFPPMTPTLPTSPQELKERMQRFQLCGGSFIAEDLKHFHNLQQQNMRYNGFKMNENKLDDRNPQIPDDYKPLSVDTGFSDSINKMQSPSSKPDLMQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKSHSLKTGYCDLSIPNYEVPKTSDYEDTKEHINEKLKFAILAQQLRASANHPEIKKEEVDEECALVIDENNDKKTEAKHQRSYEGSKILEEKLNEYQPQNKDKKNEENQDLVPVSRLLDNASQQQFKEYFKREGEEQEIGGVSEEDEEGLVASGSTSEGNISGTDENKSESETVAPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTITNDTQNNNSNFLIRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKMTNAEKNEWETPVYSKLVPESGQVQNSDLPFKCHLCDGSFSDRQDALDHIRDKHASEYDLLMSKNALDSNATTPDDTAHHDDDENEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNFENDNNVSDEDGNNMPPSFDKFLKGENNNLQKQDKTDESDGNEGGDLISNLLGIRDRSIIDKVLAASPDDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345197;
90% Identity: -
80% Identity: -