Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01005415.1:4481-8568[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-05 0.0019 18.6 0.7 1 23 141 163 141 163 0.95

2 15 0.00089 0.085 13.4 1.2 3 23 171 191 170 191 0.99

3 15 7.2e-05 0.0069 16.8 0.1 1 23 296 318 296 318 0.98

4 15 0.0075 0.72 10.5 0.2 1 23 324 347 324 347 0.96

5 15 9.3e-08 8.9e-06 25.9 2.7 1 23 373 395 373 395 0.98

6 15 0.0051 0.48 11.0 0.0 1 23 408 430 408 430 0.95

7 15 0.1 9.9 6.9 0.1 1 23 436 459 436 459 0.96

8 15 0.042 4.1 8.1 1.9 2 19 467 484 467 485 0.96

9 15 3.5e-06 0.00034 21.0 3.5 1 23 494 516 494 516 0.98

10 15 0.0033 0.31 11.6 0.3 3 23 523 543 521 543 0.96

11 15 6.4e-06 0.00061 20.1 0.4 1 23 551 573 551 573 0.98

12 15 0.0028 0.27 11.8 0.2 3 23 581 601 579 601 0.97

13 15 8.8e-05 0.0084 16.6 0.3 1 23 607 629 607 630 0.95

14 15 0.053 5 7.8 1.8 1 23 644 666 644 666 0.96

15 15 0.00031 0.029 14.9 0.1 1 20 1016 1035 1016 1038 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-05	0.0019	18.6	0.7	1	23	141	163	141	163	0.95
2	15	0.00089	0.085	13.4	1.2	3	23	171	191	170	191	0.99
3	15	7.2e-05	0.0069	16.8	0.1	1	23	296	318	296	318	0.98
4	15	0.0075	0.72	10.5	0.2	1	23	324	347	324	347	0.96
5	15	9.3e-08	8.9e-06	25.9	2.7	1	23	373	395	373	395	0.98
6	15	0.0051	0.48	11.0	0.0	1	23	408	430	408	430	0.95
7	15	0.1	9.9	6.9	0.1	1	23	436	459	436	459	0.96
8	15	0.042	4.1	8.1	1.9	2	19	467	484	467	485	0.96
9	15	3.5e-06	0.00034	21.0	3.5	1	23	494	516	494	516	0.98
10	15	0.0033	0.31	11.6	0.3	3	23	523	543	521	543	0.96
11	15	6.4e-06	0.00061	20.1	0.4	1	23	551	573	551	573	0.98
12	15	0.0028	0.27	11.8	0.2	3	23	581	601	579	601	0.97
13	15	8.8e-05	0.0084	16.6	0.3	1	23	607	629	607	630	0.95
14	15	0.053	5	7.8	1.8	1	23	644	666	644	666	0.96
15	15	0.00031	0.029	14.9	0.1	1	20	1016	1035	1016	1038	0.94

Sequence Information

Coding Sequence: ATGGAGGAATCATTCGGCTTGACGTGGGAAGATTCCGCTACAGTTGTACAAACTGAGGAAGTAATATGTGGCATCGAAAATGAAATCTTGCCAGCTGAATCTGAAGAGTTTACTGGCGTTGCTGAGGAGGTGACCGTCGAGGAAACGCCTGGCACCAGCCAAGAAAATGTACCAATTATGTATTTGTCCGATGGTAATGTGCTTGTAATGCAACAAGGCAGCGACGGAACATTCCAAGAACAGTTTATCGATTGCAATGAAGTGACCGAAGAAGTCGTCACCGAACAGTGGGTGGGCGATTGTCCGGAAGAAATCGTCATCGGATCTGAGGAGGCGGTCGGCGATGTTGAAGAACAACCGACGGACGACTGTGAAATTCCATTACCAACCGATCAAGATGAGTACACGGCAGCCAGGCCGTATCCGTGCGACTTTTGCAGCCGTCGGTTTCGTAAGAAGGCCAATTTAATGAATCACATGGTGGCCCATCAAACAGATCGTCCGCATGGATGTAATTTATGCGGTGTACGATATATTAGGAAATGCGATTTAATGaatcatttgaaaatacatGCCTACATACCGGACGCTACCACTTTCGAAGAGGAGGAAGTACAAATACCGCTCGACGATGAATTCGATGCGACCAGAAAACGCCAAAAACCGTcggtttttataaaaaaacgtaagaaaactaaaattaaagaGGAAGTCGATTCGGCGGATGGCGACGAAACGGGCGCCTCCAGTTCGCGTACATACAGTTACGTGGACGAAGATATGCGTCTAATGGAAGCAATGGCAAACAATAAAACGGAATACGctgaatatttacaaaatagtcAAGGTGAAACACGTTATCCAGTCACTGATCCAAATAAACCGTTTGTATGTCAACATTGCGGCGTTGGATTTGCACGTGAAAAAGCATTAGCAAGTCATGCACGTGTCCATGGTGGTGACAGTCCGTTTGAATGTCAAAAATGCGGTGAAATGTTTTGGGATTTAGCTTTAATGCGTGAACATTTACGCAACAAACACGGCGACATTGATGATTTTGAAGAGGATGATGACGAGGATGCTGATTATTCTGATTCAGATATAAAATATGGTACGTATTATTGTCCAACATGTGGACTGTCATTTCATCGACAAGACAATTTACGTCGCCATCAACGTATCCATGTGAAAGAGGAATTTTCTAATGAACACGAATTCGGCCACGTATGCAATGTGTGCGGTGAATCGTTTCAAGAAGCTCTGGATCTATTGGCACACGCTGAAATCCATGCACGCGGCTCCGAACACCGGTGCATGATATGCGGTGAAATATGTGCAGATGATGCGGCCGTTGCCGCCCACGTACAAACCAAACACGGTAAAACATTGCCACCGAACACGTGCATGTTGTGTGGACGTACATGTAAAGATCGTCGTACATTGTTGAAACATTCATGGGAACATTCGAAGGAGAAAATGTACGCTTGTTCGAAATGTGGTAAAACGTTTCATAATAAAGCGCGTCTAAAACGTCACATGTTGTCACATCGTAACAAAGTTGTCAATTGTGATGTGTGCGGTGAAGAGTTTCCAGATGGTAGATCATTAATGAATCATCGCCATAGTCATAGTAGCGTATCGGGTAGGCAATTTCCGTGTCGGGAATGTGGTAAAACGTTTGGATCGCGCAGTTCACAACAAATCCACATACGTATCCATACTGGTGAACGGCCGTACGGTTGTCGTTTCTGTTGGAAAGCATTTGCCGATGGTGGCACATTGCGGAAACACGAACGTATCCATACTGGCGAGAAACCGTATGCTTGTGCCGTTTGTCCGCGTGCATTTAATCAACGTGTTGTATTACGTGAACATATACGTTCACATCATTCTGGTCCAGATCCGAAATATATGCACAGTGTAACGCCATATTGTTGTTCAGTATGTTCGGATATGTTTGCCACCTCACAGGATCTCATCTTACATTTAATACATCATTGCGATATGAATACGGCAATGAAACGCCAACCACAAATCGGTCCAAGAAAATATAAACGTAGAAGAAAATTGAAACCGCACGAATTGGAATTGATTACAAGTCGAGCTGAAgctgatggtggtggtggtggtgaggAGCGTGAAGATCAGATGGTTAACGCACCGCCGCCAATATTCAGTGATCAATCGGATGATGAACAATCGAAACGTCGCAAACCGAAAATAAAACCACAGAAAAATTCACCAAAACAAAATCTAAATGACACATACACTGATTTGTATAATAGTTGTTCATCGgccattgaaaatattaattcaattgtGAATTCAAAGCCACAATCGAAGaataaaaagatgaaaatCAAATTGGAAACTTCGGTACCGTCTAGACCGAAAATGATACATACACAAAAGACTAGGGTGCCAATAGAACCGGGTGAAGATGGCAAAGTGCGGCATAAAACTAGAACATTGGTGACCAGAACACAACCGACTGAATTGAAATCGGCCACTGGGGAACGTATAAGGCCGCGAACGAAAAATGTCAGTTATCATGTATTGAATTCGGATAAATTGCCGTTGGCAACATTTCCACAAGAAGACGATACCGAACAGGctgttaataatttgttgaaGCAAGATATGAGCGAGAATGAAAATCATGATGAAAGTAATGGTATTGTATATATGGATACACCGGAAGTGGCTGCCGAACAAACGGTGGAAATTGAagaagaacaacaacaacccgAACCGGAGCCAGTCACTTTGGTGAAATTGAATGAAgataatagaataaaaacacGTTCCAGTACGAACAGTTTGAAACCGGGTAGACATATAATTGGACCAGCTGGTAAAGTGGTACGTTTAGTTAAAGAAGGTATGATTGTGTCGAAAGCGAAAAAATTAGACGACAATGAACCGGAATCGATATTACCTGATAAGACAGTACAAGTAAaacaagaattaattaaacaagaaataatTGATCCGAGTCCGTTACATGAATTGGCCGAAATATCAATGCAACATGCAcagaatttgtttaaatgtgaaatGTGCAGTGAAGTGTTCACTGATAGGGCTCAATTATTAGTTCATGTACCCAtacatatttga
Protein Sequence: MEESFGLTWEDSATVVQTEEVICGIENEILPAESEEFTGVAEEVTVEETPGTSQENVPIMYLSDGNVLVMQQGSDGTFQEQFIDCNEVTEEVVTEQWVGDCPEEIVIGSEEAVGDVEEQPTDDCEIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPDATTFEEEEVQIPLDDEFDATRKRQKPSVFIKKRKKTKIKEEVDSADGDETGASSSRTYSYVDEDMRLMEAMANNKTEYAEYLQNSQGETRYPVTDPNKPFVCQHCGVGFAREKALASHARVHGGDSPFECQKCGEMFWDLALMREHLRNKHGDIDDFEEDDDEDADYSDSDIKYGTYYCPTCGLSFHRQDNLRRHQRIHVKEEFSNEHEFGHVCNVCGESFQEALDLLAHAEIHARGSEHRCMICGEICADDAAVAAHVQTKHGKTLPPNTCMLCGRTCKDRRTLLKHSWEHSKEKMYACSKCGKTFHNKARLKRHMLSHRNKVVNCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYMHSVTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQIGPRKYKRRRKLKPHELELITSRAEADGGGGGEEREDQMVNAPPPIFSDQSDDEQSKRRKPKIKPQKNSPKQNLNDTYTDLYNSCSSAIENINSIVNSKPQSKNKKMKIKLETSVPSRPKMIHTQKTRVPIEPGEDGKVRHKTRTLVTRTQPTELKSATGERIRPRTKNVSYHVLNSDKLPLATFPQEDDTEQAVNNLLKQDMSENENHDESNGIVYMDTPEVAAEQTVEIEEEQQQPEPEPVTLVKLNEDNRIKTRSSTNSLKPGRHIIGPAGKVVRLVKEGMIVSKAKKLDDNEPESILPDKTVQVKQELIKQEIIDPSPLHELAEISMQHAQNLFKCEMCSEVFTDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345168;
90% Identity: iTF_01345168;
80% Identity: -