Osur017157.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- sd
- Assembly
- GCA_004796505.1
- Location
- SSSI01002662.1:2568-6644[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-13 2.1e-10 40.2 0.0 1 44 55 98 55 99 0.90
Sequence Information
- Coding Sequence
- ATGGCAGCCGCTGATGCGGAGGGCGTTTGGAGTCCAGATATTGAACAAAGTTTCCAAGAAGCCCTTGCCATTTATCCACCTTGCGGTAGACGGAAAATTATACTATCTGATGAAGGCAAAATGTATGGTAAGATGGAAAATAAGCAGAAAAGGCTTCAATATACCGAAGAATGCATGACCAAAGCAGTGGAAGCggttaaaaatggaaaaatgagtGCTTATAGGGCTCACAAAGAATATGGGGTTCCACGAACTACACTACTAGACAAAGTAAAAGGAAGAGTACCCGTAGAAAGAAAAATAGGTGCCGACACCGTACTCACTAAAGAAGAGGAAAATCTTCTTGTTAAATGGATATTCCACGTCTCCCAGTGTGGTTTTCCCATAACAAAACAGCAACTAATAGATAGCGTTCAGATCTTAGTCAAAAATTTAGAtagagaaaataattttaataatggaaGACCTGGCCGTAAATGGTATGAAGGATTCCTCAACCGTCATGCAGACGTAAGTACAAGAGTATCACAAAACTTAACAAATGCACGATCCAACGTAAGTGAAGATAAAATCAGAAGATGGTTTTTAGAAATAACCAATTATTTGATAGAACACAATTATTACGAAATAACAAATGATCCGAcacgtttatttaattgtgATGAAAcagcattttttttaagtccTAAAAATGACAaagttttagttaaaaaagGTGAAAAAGCTGTTTACACTTTCATTAACAATGATGAAAAAGAATGTCTGACAACCCTTGTAACATGTAGTGCTGATGGAAAAGTTCTTCCTCCAATGATAATctacaaatataaaagaattccAAAACATATAGCTGACAAAGTTCCCGATACTTGGGGCATTGGACGAAGTGAATCAGGGTGGATGACGGGAGAGAcgttttttgaatatttggCAAATGTTTTCAATCCCTGGCTATTTAGAAATAACATTCAGAAGCCTGTGATACTCTTCATGGATGGGCACACTTCTCATCTCACTATGGCATCAAGTGAATTTGCTTCTCAAAatggtataattttaatttctctGTTCCCAAATTCAACCCATATTTTACAGCCGTTGGACGTAGCGGTTTTTGGTCCATTAAAAGCACAATGGAGAAAAGTTATTTGTCAATGGcgaattgaaaataatggaAACCGTTTAAGTAGAGATATTTTTGcccaattattaaaaactacttTAGATAATATGAAACATTTGAgtgatattataaaaaatggatTTAGAACGTGTGGTCTTTTCCCGTTAAATCCcgataatataaattacaaaaaatattttaaaaatacaacatcAAATTctcaatcaataataaatgaacgagaaataaataaactagtagaatttttaaatttttttgaaaaagaaaattcacaTAAAATGGAGAAATTTAAATGTTCGGAAGAAACCTGGGACGGTCCTTTAGAAGACCTAAgcctttttcaattttggaaATCTTTAAAGAAACGTATTTCTGAAAGCAACATACACATAACTGCCGATAATCCGGAACCAGAATTACgtgaaaatattgatatttcAGGTTTAATTGACACAACTAATTTGCATTTAGATGTTGATAACCCATTGTTAGTAAATTCTGATCCAACCATCGAAAACGTAACAGAAGGAggaaattacaatataattataacagTACCTGAAATTAACTGTGATAAAAACCCTACATCAGATTTAAgtgtaaacaataatattaaccTAGTCAACACTGATATAGAATATTTAGGAAAGACCTGTGATATATCTACAAAAAAACAACCACATCCAAATAGACTATCATTAGATGATAAAAATCAATCAGTATTGGAAAAGGAATAcaattgtgataataaaaattccaatataaGTGAGACTGCCGATTCAGAAAACAGAGACATTGAAAACGACTTAAATTTAGAACACAATGACcaagaaaatatttgtgtaaatgttattgtttcaaaggaaaaaataaatgaagatCTTCAAGATTTTGAAGAATCATTACAtcaagaaaaagaagaaaatgaatACAGCCAAATTtcgaacaataataatgatatgAGTTTATCTAGCAGCGAAACTAACAAAAATGAAGAAGAGAATGTGGAATATCAAATTAAAGAAACACCTCAAAAAAAGAATAACGATGAAGTGATACCTTCAccgtttaaaaaatctttattttggCCAGAACCACCAGTTGGtcaagaaaaaagaaaaactaaagaAAAAGTACCATCCGTGGCAACATCAAATGAATGGAAATtgtattatcaaaaaaaagaggacaaaaaaaaacaggaaatATTTCGCAAAGAAAATGCAAAACAAACACGTATTAAACGGAAACTGGAAcacgaaaaaacaaaaattgaaaaattaaaaagaagaaGGGCGAAAGagcaaaataattcattttctgaagaAGAAATAAGTGAAGATGATACAAATCAAAGTAaccaaacacaaaaaaataataatttcaaaaccAATG
- Protein Sequence
- MAAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGKMENKQKRLQYTEECMTKAVEAVKNGKMSAYRAHKEYGVPRTTLLDKVKGRVPVERKIGADTVLTKEEENLLVKWIFHVSQCGFPITKQQLIDSVQILVKNLDRENNFNNGRPGRKWYEGFLNRHADVSTRVSQNLTNARSNVSEDKIRRWFLEITNYLIEHNYYEITNDPTRLFNCDETAFFLSPKNDKVLVKKGEKAVYTFINNDEKECLTTLVTCSADGKVLPPMIIYKYKRIPKHIADKVPDTWGIGRSESGWMTGETFFEYLANVFNPWLFRNNIQKPVILFMDGHTSHLTMASSEFASQNGIILISLFPNSTHILQPLDVAVFGPLKAQWRKVICQWRIENNGNRLSRDIFAQLLKTTLDNMKHLSDIIKNGFRTCGLFPLNPDNINYKKYFKNTTSNSQSIINEREINKLVEFLNFFEKENSHKMEKFKCSEETWDGPLEDLSLFQFWKSLKKRISESNIHITADNPEPELRENIDISGLIDTTNLHLDVDNPLLVNSDPTIENVTEGGNYNIIITVPEINCDKNPTSDLSVNNNINLVNTDIEYLGKTCDISTKKQPHPNRLSLDDKNQSVLEKEYNCDNKNSNISETADSENRDIENDLNLEHNDQENICVNVIVSKEKINEDLQDFEESLHQEKEENEYSQISNNNNDMSLSSSETNKNEEENVEYQIKETPQKKNNDEVIPSPFKKSLFWPEPPVGQEKRKTKEKVPSVATSNEWKLYYQKKEDKKKQEIFRKENAKQTRIKRKLEHEKTKIEKLKRRRAKEQNNSFSEEEISEDDTNQSNQTQKNNNFKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121519;
- 90% Identity
- iTF_01121519;
- 80% Identity
- iTF_01121576;