Obor012596.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736864.1:8984908-8987754[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.87 3.9e+03 -1.9 0.0 23 46 217 237 210 241 0.68 2 5 0.58 2.6e+03 -1.4 0.2 27 48 303 324 299 325 0.74 3 5 7.1e-05 0.32 11.2 0.0 12 49 325 362 318 365 0.89 4 5 0.00014 0.65 10.2 0.0 4 46 369 411 367 414 0.89 5 5 0.0023 10 6.4 0.1 26 49 533 556 526 558 0.89
Sequence Information
- Coding Sequence
- atgtactatttatcaaatttttgcCATCTGTGTCTAGAGAATGATAAACATTTAACTGATCTATCCGAGAAATTGCCGGAAAATACGACGCTCGTGTCGAAATTGAGCGCCTGCATTTTTGAAGTGGAATGGACGACGTCCAAACCTTTGCTAATATGCAACTCATGTTTGGAGAAGTTGGAATTAGCCTTCGAATTCAAGCAAACGTGCATAAAATCATACAGCAAACTCAGAGAGTACATAAACATATTGGAAGCACAAGAAGAAACAGATAAAAGATCAGCTAGAGCGTTGATCAAGGTGTTGCTGTCCAAAGGGTCGGTAATGGAGAATCAAATAGTCACTAGTCCACCAATGATGGTTTATAATCCGACTAGTTTTATTCTATCGAATGGACAGCAGATATCGTATcagaatatctttttaaatttcgttgcTACAAGTTCACCTAGTGGAAATCAACCTATATTAATGAACATTGCacctgaaaataataataatgtgtcaATCAATAGTGAtataacattaaagaaattattagaaacGAGCAAACCTGTCGAACTAAATTGTGAAATCGATCCTAGCTTATATGatgttgaacattttttatcTCCATCATCACCGCCACCAGTTACAACATCGAATATTCAATGCGATGCTTGTGGAATTTCCTACACCACGTACAAGTTGTTGCGAAAACATTTCGAAGATGTGCACGATGGTAATTTgccgtatgtatgtacattttgctttacaacatttttagtaCGAGAGCATCATGATAAACATATGAAAAGTCATTTGGATATTTATGATTATGGTACAGCACAAGGAAGTGTAACCTTAGATAAGTTAACAAAGAACCTTAGATTTCGTTTACAAGGGAACGTTGTGGATGAATATCCATGTGCCAACTGCTCGGTGATATGCTGTTCATATGAGAGCCTAATACGACACCTGGAGGAAACTCATGGCGAGAAGCCCAAAGCTCGTCCCAAAGATATGAAACCAACCATGtgtcatatttgttttaaagatttctcAACAGCATCATATTTAGTTGATCATATGAAATTACATGGATTTGATGATGGTTGGTTAGTAAAACACTTGAAGAAACCTGATCATCGCAAAAAGCCAGGTAAATCTCTTAAAGGTATGAAAATAGCTACATGCGATGTTTGTTATAGAGGATTTTCAAGCAAAAGGGCTGTAAAAAACCATATGAAATTACACGGACAATATGTTGATGTAACTGAAAGagtaaaagtaaagaaagagGAATATGTtccgaagaagaagaagaaatcgaTTGTAAATTCTACTAACAATGATTCTCAGAGCAAAGGGACTAAAGCTGAAAATGATAGCTTTCacgaaaaggaaaatattgaaaaacatcaaAGAATAGACAGTCTcaaaatcattcaaaataaGGAAGAtgcaagaaacaagaaaaaaattgaagaaaacaaatgCCTTTATGGAAAGGAAAATGACGATTCCACAGTTATTAAGGAAAATGACGATTCTACAGTTATTGAAAGCAATAATGAAATGAAGGTCGAATTAACGAAAACGAACGATAATGAAGTACAATGCAAATTCTGCAGGAtgacttttaaaaaaaatgtggatttaAGGAGACACATAAATATTAAGCATGTTAGATCAGTCCAATACAAGTGCCATCTATGTGAGCTCGATTTCTCTGAAGGACTCCGACTAGCACGACATCTACGTACGCATTATAGCAGTTTGTGCTGTTCCGAATGTCACCGAATATTTCCAAGCATTCCCGAAATAACGgaacatatgaaaaatattcactTGGAACTGAAAACTGTTGATTGTGCAGTCTGCGCCACTTCTTTCGATAACATCCCTGAATTAACTGCACATATAGAGAAACATTTGATGGAAATCGTTTTTAAATGTCATATCTGCAACAAAAAATTCGAGAAACACCAACTTCTCAGTACACACGTCTTGGAACACAACGGCATGAAAAATTGCAAGCACTGCGGGCGCTATTTTTACAGCGAGGAGGAGTTTGAAGCGCACAAGAACTCTTGTAGCGATGGGAAGTATAAGTGTGAGCATTGCCCGCTTAGTTTTTGGAAAAAGGCGGTCTTCTATATTCATGTGAAGTCCCACTCTTCGAAAGAGGACAATAATGATGAACCTCATGAGAAAATACCCAAAGTGGAAGTAGAAGTTTGA
- Protein Sequence
- MYYLSNFCHLCLENDKHLTDLSEKLPENTTLVSKLSACIFEVEWTTSKPLLICNSCLEKLELAFEFKQTCIKSYSKLREYINILEAQEETDKRSARALIKVLLSKGSVMENQIVTSPPMMVYNPTSFILSNGQQISYQNIFLNFVATSSPSGNQPILMNIAPENNNNVSINSDITLKKLLETSKPVELNCEIDPSLYDVEHFLSPSSPPPVTTSNIQCDACGISYTTYKLLRKHFEDVHDGNLPYVCTFCFTTFLVREHHDKHMKSHLDIYDYGTAQGSVTLDKLTKNLRFRLQGNVVDEYPCANCSVICCSYESLIRHLEETHGEKPKARPKDMKPTMCHICFKDFSTASYLVDHMKLHGFDDGWLVKHLKKPDHRKKPGKSLKGMKIATCDVCYRGFSSKRAVKNHMKLHGQYVDVTERVKVKKEEYVPKKKKKSIVNSTNNDSQSKGTKAENDSFHEKENIEKHQRIDSLKIIQNKEDARNKKKIEENKCLYGKENDDSTVIKENDDSTVIESNNEMKVELTKTNDNEVQCKFCRMTFKKNVDLRRHINIKHVRSVQYKCHLCELDFSEGLRLARHLRTHYSSLCCSECHRIFPSIPEITEHMKNIHLELKTVDCAVCATSFDNIPELTAHIEKHLMEIVFKCHICNKKFEKHQLLSTHVLEHNGMKNCKHCGRYFYSEEEFEAHKNSCSDGKYKCEHCPLSFWKKAVFYIHVKSHSSKEDNNDEPHEKIPKVEVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121130;
- 90% Identity
- iTF_01121130;
- 80% Identity
- iTF_01121130;