Obor009795.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- ZNF131
- Assembly
- GCA_902654985.1
- Location
- LR736900.1:233275-235908[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2.6 1.2e+04 -3.5 0.1 26 43 180 197 177 200 0.73 2 7 0.011 49 4.1 0.1 18 45 229 256 223 260 0.87 3 7 0.00093 4.2 7.6 0.0 21 44 291 314 277 322 0.90 4 7 0.27 1.2e+03 -0.3 0.2 22 31 320 329 314 343 0.74 5 7 1.7e-05 0.075 13.2 0.4 10 43 335 369 328 373 0.80 6 7 0.0082 37 4.5 0.2 21 44 375 398 370 408 0.77 7 7 6e-06 0.027 14.6 0.3 21 52 431 462 425 463 0.94
Sequence Information
- Coding Sequence
- ATGGATAAAGAAGGTGATATTACTAAAGTCTGTCGCACCTGTTTGACACGAGCAAAACGAATGCGTacaatttttgaagtaaaactATCAAACGTACATAACATACgagttattgattttataagaCGCCTCACTTCAATCAAGATTGCAAAATCAGATGAACTGCCAAACAACATTTGTGTTCACTGTATAAATGATCTATGCAAAGCTTTCGACTTTGCGCAAATGTGTATCGACAATGATACTAAATTAAAGGAgtggttgaaaaaaaatcaagttttagAAATAAGGGAAAATTTGGAACAAACTGCGGAAAAAGAGAATGGAAATGACAGCATAGATGATGATGATATCaagatagaaataaatgaaaagccCACATTCGGTAACgaaatcattataataaaaaacgaaattcaacatgaaaatttattggaatCAAAAGACGCTGATTTCGACCAAGTGTTACAAGtagatataatttcaaatgtgGGGTATACTAAGGAAGAACACCATGAAATAGCAACAGAGCATTACGCATGTAATATATGTTGTAAAGGGTTTAAGAAAGAAAGCCACTTGAAATCACATAGTCGTGTTCATAATAAAACtcaagatatatttatttgtaacgtaTGCggtcaaaaattcaattatttataccTGTTGAAGAAGCACAGCTATAAACATCAAGAGGAAAAACCATTTCCATGCACGCATTGTGATAAAGGCTGTATTACCGCAGAAAGCCTACGGAGACATATGAAGACACATGATACTGATTACGTGAAGAAAATACACGTATGCGACATTTGCTCAAAAGAATTTCGATACCCTAGTTTTTTAGCGGAACATATGAAGAACCATACCGGCGAAAAACCCTTTCTCTGTTCAATTTGTGGCAAGGGTTTTCGTCAAAGCGGAGCATTGCAATATCATATTCGATCTCACACGGGAAATAGACCATATACGTGCAATGTATGCGCTAGGACGTTTAGTTCGCCTGGTGTCTTAAAAATTCATATGCGTAGACACACGGACGAGAGACCATACGTCTGTGATATATGCGGCATGGCTTTTAGACAATCTACAGATATGAGGACCCACAGAAGAACACATACCGGGGAAAAACCTGCTCTATGTACTATATGTGGGAAAAGATTCGCTTCGTCAAGTCAATTAAATATTCACGTACGCACACATACCGGCGAAAAGCCGTTTCTGTGTTCGAGCTGTTCAAAATCATTCGCAACGAGGGACATGCTGATTAAACACGAAAGGATTCACACAGGCGAGAGACCGTACGcttgtaaaatttgtttgaaagcGTTCAATCAAAGCAGTACATTGAAGACTCATCTAAATACGCACAAACAGGCAAAACCTCCTGATCCCAGCAAGGAAAGCGACTCGATATAA
- Protein Sequence
- MDKEGDITKVCRTCLTRAKRMRTIFEVKLSNVHNIRVIDFIRRLTSIKIAKSDELPNNICVHCINDLCKAFDFAQMCIDNDTKLKEWLKKNQVLEIRENLEQTAEKENGNDSIDDDDIKIEINEKPTFGNEIIIIKNEIQHENLLESKDADFDQVLQVDIISNVGYTKEEHHEIATEHYACNICCKGFKKESHLKSHSRVHNKTQDIFICNVCGQKFNYLYLLKKHSYKHQEEKPFPCTHCDKGCITAESLRRHMKTHDTDYVKKIHVCDICSKEFRYPSFLAEHMKNHTGEKPFLCSICGKGFRQSGALQYHIRSHTGNRPYTCNVCARTFSSPGVLKIHMRRHTDERPYVCDICGMAFRQSTDMRTHRRTHTGEKPALCTICGKRFASSSQLNIHVRTHTGEKPFLCSSCSKSFATRDMLIKHERIHTGERPYACKICLKAFNQSSTLKTHLNTHKQAKPPDPSKESDSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627577;
- 90% Identity
- iTF_01121026;
- 80% Identity
- iTF_01121026;