Obor003859.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- Trl
- Assembly
- GCA_902654985.1
- Location
- LR736859.1:625105-627730[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9 8.5e+03 -3.0 1.5 3 17 145 157 140 162 0.43 2 3 2.5e-14 1.1e-10 41.4 0.4 15 44 228 257 222 261 0.94 3 3 2.3 1e+04 -3.3 0.1 18 29 306 317 300 320 0.79
Sequence Information
- Coding Sequence
- ATGTCTTCGAGCCAACTATATAATTTAACATGGGGAGAATATGGAACATCATTAATATCAGCAGTGCAATTACTTCGTTGCCAAGATGAGTTAGTTGACGTAACATTGGCTGCTGGTGGAAGAACTTTTCATGCTCATAAAGTGGTACTATGTGCTGCAAGTCCATTCCTATTAGATTTATTGAAGAGTACTACCTGTAAACATCCAGTTGTCATGTTAGCTGGAGTTCAAGCATCTGATTTAGAAGCTCTACTTGAATTTGTGTATCGAGGCGAAGTTAGTGTTGATCCAAATCAATTGCCATCTCTTCTGCAAGCAGCACATTGCCTAAATATACAAGGCCTATCACCTACTCATaaagCTCAAGATCTAGTACAGTCACAGATTAGCCTGAGTCAAGACGAAGAGTCTATACTGAAACGAAAAAAGAGAGCGAAACGAATGAGGAGTCCGACAAGCCAACCACAGAGTAACAAATGGTCCAAGACATACGTTCAAACTGATGGAAATGGTAGTTCCATGACTGAACAACAAGAAAGCGCATCTTCCAACTGGACGCAGCAAATGAATTTAGTCAACGTCTCATCATCAACCGCAGCTTTAACTAATATCCCATTACATACACCTATACTGGTCCAAAATATACCAGTGTCTGTAAACAATACTGGGCAAAGTCCTGCACCTAAAGTAAGAGGTGCATCGGATCAACCGGGTACATGCCCTTTGTGCGGAGCTATGTTGAGGCAAGCGAGGAATTTAAGAAGGCACCTGATAACCAGCTGCAAATATCGTTCGATAAGTAACCAATCGAATATGTTAAACACTCAGCATGTGGAAAGAACATCTAACGGTACCTTGCATCAACTACAAACGATACCACTCCAAAATGTTGAACGGGTTTCGCAGAATATCGAAAGGATTGACAGTAAACAAATGGCTTTAACACCAATATCCTGCAGTGACCTTTTACCATCCACATCTAACATTATGTCCAGCAGTTTGCAATAA
- Protein Sequence
- MSSSQLYNLTWGEYGTSLISAVQLLRCQDELVDVTLAAGGRTFHAHKVVLCAASPFLLDLLKSTTCKHPVVMLAGVQASDLEALLEFVYRGEVSVDPNQLPSLLQAAHCLNIQGLSPTHKAQDLVQSQISLSQDEESILKRKKRAKRMRSPTSQPQSNKWSKTYVQTDGNGSSMTEQQESASSNWTQQMNLVNVSSSTAALTNIPLHTPILVQNIPVSVNNTGQSPAPKVRGASDQPGTCPLCGAMLRQARNLRRHLITSCKYRSISNQSNMLNTQHVERTSNGTLHQLQTIPLQNVERVSQNIERIDSKQMALTPISCSDLLPSTSNIMSSSLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308134;
- 90% Identity
- iTF_00956416;
- 80% Identity
- iTF_01120972;