Basic Information

Insect: Oryctes borbonicus
Gene Symbol: RREB1
Assembly: GCA_902654985.1
Location: LR736861.1:7047766-7101580[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.7e-05 0.0031 17.9 1.4 1 23 88 110 88 110 0.98

2 16 0.00052 0.044 14.3 0.2 1 23 124 146 124 146 0.97

3 16 4.1e-06 0.00035 20.9 4.3 1 23 152 174 152 174 0.99

4 16 0.52 43 4.8 0.1 1 23 234 258 234 258 0.83

5 16 0.0036 0.3 11.7 2.9 2 23 264 286 264 286 0.95

6 16 0.073 6.1 7.5 0.8 1 21 333 353 333 354 0.95

7 16 0.052 4.4 8.0 0.1 1 23 485 507 485 507 0.96

8 16 4.8e-06 0.0004 20.7 0.7 1 23 516 538 516 538 0.99

9 16 0.0006 0.051 14.1 3.1 1 23 544 567 544 567 0.97

10 16 0.00052 0.043 14.3 2.8 1 23 922 945 922 945 0.96

11 16 0.00036 0.03 14.8 0.4 2 23 1162 1183 1161 1183 0.97

12 16 0.091 7.7 7.2 6.3 1 23 1189 1212 1189 1212 0.97

13 16 0.057 4.8 7.8 4.9 1 20 1240 1260 1240 1264 0.95

14 16 1.8 1.5e+02 3.1 3.6 1 23 1318 1341 1318 1341 0.93

15 16 0.012 1 10.0 0.4 3 23 1388 1408 1386 1408 0.93

16 16 0.0054 0.46 11.1 5.9 1 23 1414 1436 1414 1436 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.7e-05	0.0031	17.9	1.4	1	23	88	110	88	110	0.98
2	16	0.00052	0.044	14.3	0.2	1	23	124	146	124	146	0.97
3	16	4.1e-06	0.00035	20.9	4.3	1	23	152	174	152	174	0.99
4	16	0.52	43	4.8	0.1	1	23	234	258	234	258	0.83
5	16	0.0036	0.3	11.7	2.9	2	23	264	286	264	286	0.95
6	16	0.073	6.1	7.5	0.8	1	21	333	353	333	354	0.95
7	16	0.052	4.4	8.0	0.1	1	23	485	507	485	507	0.96
8	16	4.8e-06	0.0004	20.7	0.7	1	23	516	538	516	538	0.99
9	16	0.0006	0.051	14.1	3.1	1	23	544	567	544	567	0.97
10	16	0.00052	0.043	14.3	2.8	1	23	922	945	922	945	0.96
11	16	0.00036	0.03	14.8	0.4	2	23	1162	1183	1161	1183	0.97
12	16	0.091	7.7	7.2	6.3	1	23	1189	1212	1189	1212	0.97
13	16	0.057	4.8	7.8	4.9	1	20	1240	1260	1240	1264	0.95
14	16	1.8	1.5e+02	3.1	3.6	1	23	1318	1341	1318	1341	0.93
15	16	0.012	1	10.0	0.4	3	23	1388	1408	1386	1408	0.93
16	16	0.0054	0.46	11.1	5.9	1	23	1414	1436	1414	1436	0.98

Sequence Information

Coding Sequence: ATGCAAGGCATCGTATATATGCCGCACAATTTGGAAACGGGTTCATCGCCACCACATAAAGACAGcgATACCAATGAGAATATGGATGCGACAACCACTGAACCAAATATTAACCATACCAAAGAACCGCCGGCCAATCAAAGCGATTCTGGTTTCCTTTCCATCACGAATAATACCACCTATCCAGATTCCGAAGAAAGAACTCACCAAGAAAGCGGTGACACCGACAACAGGAGCGATTGCAGTTCTCCAGGACGAAAATATTATTGCCCAATCTGCGATACGATGTTAACGTCGCAACACGAATTCACGCTGCATATTCGATCTCATAACAACGACGCCGCAGAATcgcattttcaagaaaaaggcTTCGTTTGTAGAATCTGCTCGAAAATATTGAGTTCGAGTTCCAGTCTAGATCGTCATGTACTTGTACATAGCGGAGAGAGGCCTTTTACGTGTAAATATTGCGGTGACACATTTACAACGAACGGAAACATGCATAGGCATATGCGGACGCACCCGTTTAAAAACGATTACGAGTCAGATGGCAGTACAGACAGTAGCAGTAGTAATTCTAAAAACGTAGAGTACAATAACAATAAGGTCGATAGGCACGAGAAACGAAAATTAACACTATGCGAAGATTACAAAAGTTCCCGAATAAAGCTTGAAGATATcgataaaaacaatgaaaaatataaatgtccTGTTTGCGAACGCGATGATTTCACGAGCAAATCTGTTCTAGAGGTTCACTTAGAGGACAACCATCCAGATTTCCCGGCAAAATGTCACGATTGCAATAgtacatttaaaaacaacaagCTTTTAAGTATACATAAAGTCACCGCCCACGaagaaaacagtaaaataaaaaactcgGTTATCGGATTTAAAGATCTCACTTTTGTCGATTTTTCAAGCGAAAAATTTCCTCACATTGCTAGGCACgagtgtgaaaaaaatctccaCAAAGCTTCCACgggattaaaatttcaatgtcaAAAATGTTCCAGAGCCTTTCCATGTGCAAACTCTCTAGAAATTCATCAAAAAGAATGTTGCGTTGGTTTGGATTTAAGTATTAGCAATGAGAATTCTGTCGACTTATCGAAATCATCAACATTAAACGACAGCGATATCAAACGAACTGATTTCTTTTCGAGATTGGATTTGCAGGACAATTCGCCCGAGAAGAACCATTTGGATACGGCTACcttacaacaaaaattgttgcaaacGATGAAAAATATCGATAACAGCAAAGATTTAGCAGATATCCAATCGATTATATCTATGACAACGAATGGTAGCTTTTTACAACATTTGCAAACAAAACCTGATTTACTAAATCAAACAACGAGTGATATACAGCTAGAGAAAACGGAAGAGGAAGAAGCTCAGGATATATTCGCAAAAGAATTTCGCAAAATGAAACTGCGCGGTGAGTTTCCATGTCGACTTTGCACTGCGGTATTTCCAAACTTACGCGCGCTTAAAGGTCACAATCGCGCTCACCTAAACGGCAATACCAACGGAACGTACAGGTGCAATATGTGTCCTCATTCTTCTGTGGACAAAGCTGCTTTAATACGTCATATGCGCACCCACAATGGCGATAGACCCTACGAATGTAGTCTGTGTAATTATGCCTTTACAACGAAAGCAAATTGCGAACGGCACTTAAGAAATAGACATGCAAAAACTACGCGGGAGGAagtgaaaaaatcaataatttatcatCCTTCCGAAGATCCAACTAATgacgatataaataaattagtggCTAGAGAAGATCGAAAAGTAAACTCCAGTTTTAATGTTGCTGAATCAAACGAAATTAGCCCCGAAAAAATAAGAAGTTCGACGCCTAAGATACATCCTGAATTGTTTACCACGCGCAGTGAAACCATTCCATTGTCAACGCAAATTGCAGCTCCGTGGAGAAATCAATTTCTGGATAAATCGCCAACAAAATCAATTCCCgacagcaaattaaaaaatgatctaCCATATTTGCaaccacaaattaattttatgccaAAATCTGATAATGTATCAACACCTCAAAAAGCAATCGCGAAAATTCatgtaaaaaatttagataCCCTAAAAGAGTTCGATTGCAGCGaagatgaaaaatatgaaaatttcgaTGAAGACGAACCGATGGATCTAAGCAAAAAGAAAACTCCAGATGTGGATGCTACAAGTGACAATAATACCGATGAATCTCCTGAagatttatcaaacaaaaaaccaaatttaattccGTTTAACATGAATGAAATATTGGCACAGCAGCTGTTGATGAAAAGTACTCCCAAAATAGATCATACAAGCTTTTACGCGGCGCAGTTTGCTTTATTGCGCAACTCTTTTCCCGGGTGGTCCCCATTTTCTCCAATTAATCCGTTACTTTTCCAAAACATGCAGAATCCAATTATTCCTCAAGAGCAGGAAGTTAAGCGACTACAACAATTGTGTGGCGGGGGCATGATCAACAGTTTAAATGACCGATCGTCGTTTCAAAGTTTACACAGAAATCCTATTTTAAACAACTTCAAAGTTGAGAATCATATTAAGAGAGAAGAAATTACACCACTCACTCTAAACGTTGAGTCAGCGTTTAACGAAAGTAACACAGTATCGCAACCTAAATCAGATCTACTGCAATCACCTAATTCAGTTAAAATGGTGATTAAAAATGGTGTTTTAATGcctaaacaaaaacaaaggcGTTACCGTACGGAAAGACCTTTTTCATGCGAACACTGCTCAGCTAGATTCACGCTCAGATCTAATATGGAACGTCATATTAAGCAGCAACATCCACAATATTGGTCTCAACGACAACGTTCGAATGTTGGGAGCAGCGGCAGAAAAAGTGCAACATTAACAGCAAATTTACACATTCCAAACTATGAACAACCAAAGACTCACCAAGACTACGAAGAGAATAAGAGCGGTAATCACATATCGGAAAAGATTAAATATGCCATATTAGCACAACACTTAAGATCTAATCAAGAGTACAAAAACTCAATATTAACGCCAAAGAAGGAAGACGACGACGAATGCGCTCTAATTATTGACGAAAATGAATCGAAACCAGAAAATTCGGAAgataaaaaatcaacatttgaCGAAAAGATGGAAGTTTGCGAAAATCACATTCCTAAATTAGACGCTTTACTCTGCAATAAACCAAGTAAACAGGATGAAACACAAGACTTGGTATCGGTGTCACGTCTACTTGATAATGCTTCTCAACAACCGTTCAAGGATTACTTCAAGAGAGATGGAGACGAGCAAGATGGTGAAGGTGGAAGCGAAGAAGATGAGGAGGGTTTGGTAGCTAGCGGCAGTACGAGCGAAGGCAATTCTGGTACTGATGAAAATaaATCCGAAtcagaaaatttatcaaatcagGGTCCAGTTAAAAAGAAGTCGGCATACTCCTTAGCTCCAAACCGAGTCAGCTGTCCATATTGCAGCAGAAAGTTTCCTTGGACATCTTCATTACGAAGACATATTCTCACTCACACCGGTCAAAAACCTTTCAAGTGCAGCCATTGTCCACTACTCTTCACAACCAAATCAAATTGTGACCGACATTTATTGCGAAAGCATGGTAGCTCGGCGACAACGATCGCAAATGAATCTGGAAGCAATAATGCAAACTATTTAATGCGAAATGTTCCGGAAAGACCGTTCAAATGTTCCAATTGCCCTAGCAGCACGTTCTCGACGTATTCCAATTTGAAGAAACATATGAGCTGCAAGCACGGTTCACGGGCGGACGATAAAGCTCAAGGTTATGAAGCGGGCAGTTCCGAGGAtgagaaacaaaatatgcaagACCAAAACTGCGACTGGACTACAACGATTACGACAAATAAATTGCcaatagaaaatcaaaacatacaGAGTAATTCGGACCTTCCATTTAAGTGTCATCTTTGCGAAGGGTCGTTTTCCGAAAGAAACGATTGTCTAGATCACATTAGAGACAAGCATCCTTCGGAATATGATCTTTTGATGTCTAAAAATGCTTTAGATAACAACGCTTCAACACCAGAAGAATCTGCTAATCATGACGAAGATGAAAACGAAGCTCGTGGGAAATTTCCAGATTATGCCAATAGAAAAGTAATCTGCGCGTTTTGCATGAGACGATTTTGGTCCGCTGAAGATCTAAGAAGACATATGCGCACTCACACGGGCGAAAGGCCATTCAGTTGTGATATCTGCCGCAGGCGCTTCACCCTTAAGCATAGCATGTTACGTCATCGCAAAAAGCACAATCTGCCATATGGAAATGACAATGTAAATAGTGATGAAGATAATGGAAGTCCCACCTTAGGTAAAGTAAAGACGAGCATGGTAAAAGCTGCGGATAAAACCGATGAATCGGACGGAAACGAAGGAAATGATTTAATCAGCAATTTGTTAGGAATCCAGGATAAATCGATAATAGAGCAAGTCTTAACAGCATCTCCAGATGATGCGGCAAAATTACTAGGAGTGAAAAAGGGAAATCAAGACTAG
Protein Sequence: MQGIVYMPHNLETGSSPPHKDSDTNENMDATTTEPNINHTKEPPANQSDSGFLSITNNTTYPDSEERTHQESGDTDNRSDCSSPGRKYYCPICDTMLTSQHEFTLHIRSHNNDAAESHFQEKGFVCRICSKILSSSSSLDRHVLVHSGERPFTCKYCGDTFTTNGNMHRHMRTHPFKNDYESDGSTDSSSSNSKNVEYNNNKVDRHEKRKLTLCEDYKSSRIKLEDIDKNNEKYKCPVCERDDFTSKSVLEVHLEDNHPDFPAKCHDCNSTFKNNKLLSIHKVTAHEENSKIKNSVIGFKDLTFVDFSSEKFPHIARHECEKNLHKASTGLKFQCQKCSRAFPCANSLEIHQKECCVGLDLSISNENSVDLSKSSTLNDSDIKRTDFFSRLDLQDNSPEKNHLDTATLQQKLLQTMKNIDNSKDLADIQSIISMTTNGSFLQHLQTKPDLLNQTTSDIQLEKTEEEEAQDIFAKEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNTNGTYRCNMCPHSSVDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNDDINKLVAREDRKVNSSFNVAESNEISPEKIRSSTPKIHPELFTTRSETIPLSTQIAAPWRNQFLDKSPTKSIPDSKLKNDLPYLQPQINFMPKSDNVSTPQKAIAKIHVKNLDTLKEFDCSEDEKYENFDEDEPMDLSKKKTPDVDATSDNNTDESPEDLSNKKPNLIPFNMNEILAQQLLMKSTPKIDHTSFYAAQFALLRNSFPGWSPFSPINPLLFQNMQNPIIPQEQEVKRLQQLCGGGMINSLNDRSSFQSLHRNPILNNFKVENHIKREEITPLTLNVESAFNESNTVSQPKSDLLQSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSNVGSSGRKSATLTANLHIPNYEQPKTHQDYEENKSGNHISEKIKYAILAQHLRSNQEYKNSILTPKKEDDDECALIIDENESKPENSEDKKSTFDEKMEVCENHIPKLDALLCNKPSKQDETQDLVSVSRLLDNASQQPFKDYFKRDGDEQDGEGGSEEDEEGLVASGSTSEGNSGTDENKSESENLSNQGPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGSSATTIANESGSNNANYLMRNVPERPFKCSNCPSSTFSTYSNLKKHMSCKHGSRADDKAQGYEAGSSEDEKQNMQDQNCDWTTTITTNKLPIENQNIQSNSDLPFKCHLCEGSFSERNDCLDHIRDKHPSEYDLLMSKNALDNNASTPEESANHDEDENEARGKFPDYANRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNLPYGNDNVNSDEDNGSPTLGKVKTSMVKAADKTDESDGNEGNDLISNLLGIQDKSIIEQVLTASPDDAAKLLGVKKGNQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00627621;
90% Identity: iTF_00627621;
80% Identity: -