Basic Information

Insect: Oryctes borbonicus
Gene Symbol: -
Assembly: GCA_902654985.1
Location: LR736866.1:5473735-5475798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0062 0.52 10.9 0.1 1 21 134 154 134 155 0.95

2 11 7.7e-05 0.0064 16.9 1.2 1 23 159 181 159 181 0.98

3 11 9.7e-05 0.0082 16.6 3.0 1 23 187 210 187 210 0.95

4 11 0.00013 0.011 16.2 5.8 1 23 258 280 258 280 0.98

5 11 1.6e-06 0.00014 22.1 0.4 1 23 285 307 285 307 0.97

6 11 9.8e-08 8.2e-06 26.0 0.5 1 23 313 336 313 336 0.98

7 11 0.00029 0.024 15.1 4.4 1 23 350 372 350 372 0.97

8 11 9.9e-06 0.00083 19.7 1.8 1 21 378 398 378 401 0.96

9 11 4.6e-07 3.9e-05 23.9 0.1 1 23 407 429 407 429 0.98

10 11 9.5e-06 0.0008 19.7 0.6 1 23 437 461 437 461 0.97

11 11 4.1e-08 3.5e-06 27.2 0.2 1 23 467 489 467 489 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0062	0.52	10.9	0.1	1	21	134	154	134	155	0.95
2	11	7.7e-05	0.0064	16.9	1.2	1	23	159	181	159	181	0.98
3	11	9.7e-05	0.0082	16.6	3.0	1	23	187	210	187	210	0.95
4	11	0.00013	0.011	16.2	5.8	1	23	258	280	258	280	0.98
5	11	1.6e-06	0.00014	22.1	0.4	1	23	285	307	285	307	0.97
6	11	9.8e-08	8.2e-06	26.0	0.5	1	23	313	336	313	336	0.98
7	11	0.00029	0.024	15.1	4.4	1	23	350	372	350	372	0.97
8	11	9.9e-06	0.00083	19.7	1.8	1	21	378	398	378	401	0.96
9	11	4.6e-07	3.9e-05	23.9	0.1	1	23	407	429	407	429	0.98
10	11	9.5e-06	0.0008	19.7	0.6	1	23	437	461	437	461	0.97
11	11	4.1e-08	3.5e-06	27.2	0.2	1	23	467	489	467	489	0.99

Sequence Information

Coding Sequence: atgaatgttTGCAGATTATGTTTAGGCAATTTGCCAGATACACCAATTTCGATACACGGCGACGACACTTCTcatgaaactaaaattaaatttgttatacccGAAATTGATCTCAGCATTACTCCAAATTTTGATTTGTGTCATCTTTGCACCGATTCACTTTGTGCAGCGTATTCATTTATGCGAAGATGTATTCAAATAGAACATGTTGTAAAGGAGTATATCTCACAAAATGGAACTGCTATGTTAAGTTTGGAAAatgtgaaacaatattgtaaatttagagCATCCAAGATGGGAAACGACTTAGTGGAAGAAACTAATATTAAGATAGAGATATACgatgaagatataaaaataaatgccgATGCTAATATACATGAAATGCAAAAATCTAGTTTTACTTGCGATAagtgttatataatttttaataatgaagattCTATCGAAGCTCATCAAAAGATATGCAGTTTATATAAATGCAGTGAGTGTAATGAAATATGCTCAACCGAAGATGAATTGGAAagccattttaaaattcatacgACTGAGAGGTTACATAATTGTGATATTTGTCAAAAACCATTTAAAGAACTTTCTGAGTTGAAACATCATGTTCTTAAGCAGCACAATAAATCTGTAACAAGTAATGTTGGCCTTCAATCCTTAGAATATAAATCTCTAAGTAATAAGTGCAGCAATGATATTTCTAATACAAGTATTCATAGTCATCCTCTAGTCAAAGTAGACGATGGCTATAAGAGTCAGGAATATAAGTGCAAATTGTGCAGCAAGGTGTTTACACTTCAGAAATCTTTCAAGAGACATTTACTTCACCATCGTCCAAAACGATTTGCGTGTGAAATTTGTGGTCAGAGATGTGCaggaaaaagcaatttaatgGAACATATGCGCGTTCATACCGGTGAACGTCCATTTAAATGTGAAACTTGTGATAAAGCATTTACTCAGAAGGGCACATTAACGGCTCACGTAAGATCTgtacatgaaaatataaatgatagACCTGATCATCATCGAAAACCTTTCGCATGTGAAATTTGTGATCATAGATGCACCAAAAAGAGCAAAGTAAAAGAACATATGCGGGTACATACTGGTGAGCGTCCATTTAAATGTGAAACTTGTGGTAAAGCATTTGCCCACAGGGCTGCGTTACGAGTTCATATAAAGTgtttacatgaaaatataaaacctttCGTGTGCGAAGTATGCGGTAAAAGTTTTACTATATATGGAACATTGGCCCGGCATATACGAGTGCATACAAACCCAGTTGAAAAAACGTTCCGTTGTTCCTACGAAGGATGTggtaaaatgtttaatacacAAGTAGGTGTTAGAAGACATATGCAACAGCATACGGctacaatacaatataaatgtaCGGAATGTGACAAAGCATTTATAAATCCCACTGCATTAAAAGTCCATATACAAACTCATACTGATATGTCATATACATGA
Protein Sequence: MNVCRLCLGNLPDTPISIHGDDTSHETKIKFVIPEIDLSITPNFDLCHLCTDSLCAAYSFMRRCIQIEHVVKEYISQNGTAMLSLENVKQYCKFRASKMGNDLVEETNIKIEIYDEDIKINADANIHEMQKSSFTCDKCYIIFNNEDSIEAHQKICSLYKCSECNEICSTEDELESHFKIHTTERLHNCDICQKPFKELSELKHHVLKQHNKSVTSNVGLQSLEYKSLSNKCSNDISNTSIHSHPLVKVDDGYKSQEYKCKLCSKVFTLQKSFKRHLLHHRPKRFACEICGQRCAGKSNLMEHMRVHTGERPFKCETCDKAFTQKGTLTAHVRSVHENINDRPDHHRKPFACEICDHRCTKKSKVKEHMRVHTGERPFKCETCGKAFAHRAALRVHIKCLHENIKPFVCEVCGKSFTIYGTLARHIRVHTNPVEKTFRCSYEGCGKMFNTQVGVRRHMQQHTATIQYKCTECDKAFINPTALKVHIQTHTDMSYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00956476;
90% Identity: iTF_00956476;
80% Identity: -