Basic Information

Insect: Marronus borbonicus
Gene Symbol: -
Assembly: GCA_902655005.1
Location: LR737381.1:30070258-30072268[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0042 0.35 11.5 0.1 1 21 145 165 145 166 0.95

2 11 0.00022 0.018 15.5 1.2 1 23 170 192 170 192 0.98

3 11 0.00057 0.047 14.2 2.9 1 23 198 221 198 221 0.96

4 11 0.00014 0.012 16.1 5.8 1 23 269 291 269 291 0.98

5 11 1.8e-06 0.00015 22.1 0.3 1 23 296 318 296 318 0.97

6 11 1.4e-08 1.1e-06 28.8 1.2 1 23 324 347 324 347 0.98

7 11 0.00032 0.026 15.0 4.4 1 23 361 383 361 383 0.97

8 11 1.1e-05 0.0009 19.7 1.8 1 21 389 409 389 412 0.96

9 11 5.1e-07 4.2e-05 23.8 0.1 1 23 418 440 418 440 0.98

10 11 2.5e-05 0.0021 18.5 1.8 1 23 448 472 448 472 0.97

11 11 1.4e-07 1.1e-05 25.6 0.6 1 23 478 500 478 500 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0042	0.35	11.5	0.1	1	21	145	165	145	166	0.95
2	11	0.00022	0.018	15.5	1.2	1	23	170	192	170	192	0.98
3	11	0.00057	0.047	14.2	2.9	1	23	198	221	198	221	0.96
4	11	0.00014	0.012	16.1	5.8	1	23	269	291	269	291	0.98
5	11	1.8e-06	0.00015	22.1	0.3	1	23	296	318	296	318	0.97
6	11	1.4e-08	1.1e-06	28.8	1.2	1	23	324	347	324	347	0.98
7	11	0.00032	0.026	15.0	4.4	1	23	361	383	361	383	0.97
8	11	1.1e-05	0.0009	19.7	1.8	1	21	389	409	389	412	0.96
9	11	5.1e-07	4.2e-05	23.8	0.1	1	23	418	440	418	440	0.98
10	11	2.5e-05	0.0021	18.5	1.8	1	23	448	472	448	472	0.97
11	11	1.4e-07	1.1e-05	25.6	0.6	1	23	478	500	478	500	0.98

Sequence Information

Coding Sequence: ATGGCAGCAAAtgtcaaaaacaattttaaaatgatgaatGTTTGCAGATTATGTTTAGGCAATTTGCCAGATACACCAATTTCGATACACGGCGACGACACTTCTcatgaaactaaaattaaatttgttataccCGAAATTGATCTCAGCATTACTCCAAATTTTGATTTGTGTCATCTTTGCACCGATTCACTTTGTGCAGCGTATTCATTTATGCGAAGATGTATTCAAATAGAACATGTTGTAAAGGAGTATATCTCACAAAATGGAACTGCTATGTTAAGTTTGGAAAatgtgaaacaatattgtaaatttagaGCATTCAAGATGGGAAACGACTTAGTGGAAGAAACTAATATTAAGATAGAGATATACgatgaagatataaaaataaatactgatGCTAATGTACATGAAATGCAAAAATCTAGTTTTACTTGCGATAagtgttatataatttttaataacgaagATTCTGTTGAAGCTCATCAAAAGGTATGCAGTTTATATAAATGCAGTGAGTGTAGTGAAATATGCTCAACCGAAGATGAATTGGAAagccattttaaaattcatacaaCTGAGAGGTTACATAGTTGTGACGTTTGTAAACAACCATTTAAAGAACTTTCTGAGTTGAAACATCATGTTCTTAAGCAGCACAATAAATCTGTAACAAGTAATGTTGGCCTTCAATCATTAGAATATAAATCTGTAAGTAATAAGTGCAGCAATGATATTTCTAATACAAGTATTCATAGTCATCCTCTAGTCAAAATAGACAATGGCTATAAGAGCCAGGAATATAAGTGCAAATTGTGCAGCAAGGTGTTTACACTTCAAAAATCTTTCAAGAGACATTTACTTCACCATCGTCCAAAACGATTTGCGTGTGAAATTTGTGGTCAGAGATGTGCaggaaaaagcaatttaatagaACATATGCGGGTTCATACCGGTGAACGtccatttaaatgtaaaacttgTGATAAGGCATTTACTCAGAAAGGCACATTAACAGCTCACATGAGATCTgtacatgaaaatataaatgatagACCTGATCATCATCGAAAACCTTTCGCATGTGAAATTTGTGATCATAGATGCACCAAAAAGAGCAAAGTAAAAGAACATATGCGGGTACATACTGGTGAGCGTCCATTTAAATGTGAAACTTGTGGTAAAGCATTTGCCCACAGGGCTGCGTTACGAGTTCATATAAAGTGtttacatgaaaatataaaaccttTTGTGTGCGAGGTATGTGGTAAAAGTTTTACTATATATGGAACATTGGCCCGGCATATACGAGTGCATACAAATCCAGTTGAAAAAACGTTCCGTTGTTCCTATGAAGGATGTGGTAAAATGTTTAATACACAAGTAGGTGTTAGAAGACATATGCAACACCATACGGCTACAATACAACATAAATGTACGGAATGTGATAAAGCATTTATAAATCCCACTGCATTAAAAGTCCATATACAAACTCATACTGATATGTCATATACGTGA
Protein Sequence: MAANVKNNFKMMNVCRLCLGNLPDTPISIHGDDTSHETKIKFVIPEIDLSITPNFDLCHLCTDSLCAAYSFMRRCIQIEHVVKEYISQNGTAMLSLENVKQYCKFRAFKMGNDLVEETNIKIEIYDEDIKINTDANVHEMQKSSFTCDKCYIIFNNEDSVEAHQKVCSLYKCSECSEICSTEDELESHFKIHTTERLHSCDVCKQPFKELSELKHHVLKQHNKSVTSNVGLQSLEYKSVSNKCSNDISNTSIHSHPLVKIDNGYKSQEYKCKLCSKVFTLQKSFKRHLLHHRPKRFACEICGQRCAGKSNLIEHMRVHTGERPFKCKTCDKAFTQKGTLTAHMRSVHENINDRPDHHRKPFACEICDHRCTKKSKVKEHMRVHTGERPFKCETCGKAFAHRAALRVHIKCLHENIKPFVCEVCGKSFTIYGTLARHIRVHTNPVEKTFRCSYEGCGKMFNTQVGVRRHMQHHTATIQHKCTECDKAFINPTALKVHIQTHTDMSYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01121025;
90% Identity: iTF_01121025;
80% Identity: -