Basic Information

Insect: Oryctes borbonicus
Gene Symbol: -
Assembly: GCA_902654985.1
Location: LR736859.1:13884642-13895598[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4e-06 0.00011 22.4 0.6 1 23 185 207 185 207 0.98

2 12 0.0013 0.11 13.0 1.6 1 23 213 235 213 235 0.96

3 12 5.2e-06 0.00043 20.6 3.2 1 23 241 263 241 263 0.98

4 12 2e-05 0.0017 18.7 0.4 1 23 275 297 275 297 0.96

5 12 3.7e-05 0.0031 17.9 0.3 2 23 304 325 303 325 0.97

6 12 1.1e-06 8.8e-05 22.8 4.3 1 23 331 353 331 353 0.97

7 12 2e-06 0.00016 21.9 0.1 1 23 359 381 359 381 0.96

8 12 2.8e-06 0.00023 21.4 0.1 1 23 387 409 387 409 0.98

9 12 2.8e-07 2.3e-05 24.6 1.6 1 23 415 437 415 437 0.98

10 12 4.8e-06 0.0004 20.7 3.2 1 23 443 465 443 465 0.97

11 12 1.5e-06 0.00012 22.3 0.2 3 23 473 493 472 493 0.99

12 12 5.6e-06 0.00047 20.5 0.6 1 23 499 521 499 521 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4e-06	0.00011	22.4	0.6	1	23	185	207	185	207	0.98
2	12	0.0013	0.11	13.0	1.6	1	23	213	235	213	235	0.96
3	12	5.2e-06	0.00043	20.6	3.2	1	23	241	263	241	263	0.98
4	12	2e-05	0.0017	18.7	0.4	1	23	275	297	275	297	0.96
5	12	3.7e-05	0.0031	17.9	0.3	2	23	304	325	303	325	0.97
6	12	1.1e-06	8.8e-05	22.8	4.3	1	23	331	353	331	353	0.97
7	12	2e-06	0.00016	21.9	0.1	1	23	359	381	359	381	0.96
8	12	2.8e-06	0.00023	21.4	0.1	1	23	387	409	387	409	0.98
9	12	2.8e-07	2.3e-05	24.6	1.6	1	23	415	437	415	437	0.98
10	12	4.8e-06	0.0004	20.7	3.2	1	23	443	465	443	465	0.97
11	12	1.5e-06	0.00012	22.3	0.2	3	23	473	493	472	493	0.99
12	12	5.6e-06	0.00047	20.5	0.6	1	23	499	521	499	521	0.97

Sequence Information

Coding Sequence: ATGGATATGAGTATATACTTAACGGCACCACTTCAATTGGACAAGATATGTAGAGCTTGTTTAACAGAAAAGGGCGACATGAGACCTTTATTTGGTGCTTGCTTAGATGAAATGTTAGTCTCTTTTGCTTCTTTACagATACGAGAAGGAGATGGTTTGCCAAGTCTAATGTGCGTTCAATGCGTTCTCCAATGTAGCAGAGCGTATACGTTCAAACAGCAATGCGAAAAATCCGAGAATATATTACGACAATATATGACTCCAGAATTTCAGgaacaatTATCACAACATTTGGCGAATCAGACAAAAGTAGAATTACAAGAACAACTACAATTTCCTAGCAATCTTGATAGAGTTGTAGCGGATCAGCTTCCTGCTGAGTTTGTTAGCGTAGAATATGGAgatcaaaatatttctataGTTAAAGACGAATTTGTTCTAATTAATGAAGTAACAGAagagatttttacgaaaatagacAATCGAGAAAAAAGTGATAAGACTGTAGAAGAAGCCCTAAACGAATCGCAGGATGaagaaaaaccattaaaatatcCCTGTTCAAAATGCAAAGAATCTTTTTCGTTGAAAGTAGATTTAAAGATTCATATGATGACTCATCCAAAAGAACTGGAGCACATTTGTCATGTTTGTCAAAAAGCGTTTCCGGAAGCTCGAATTTTAAAGCGCCATCTAAAGATACACCTTGATAAGAAACCACATCAATGTGATCAATGCGATATGTCGTTTGCTGAAAGTTCAAACCTTACAAAGCATAAGAAAAAACATACAGGGGAATTAAGAAATGTCAAAGGAAAGCCGTATTTGTGTTCAGTTTGTGGCAGGGCGTTCAAATGGCCTTCAAGCCTTTCAAAACATATGAAATATCACACTGGGCATAAATTACTTTCTTGTGAGTATTGCAACAAACAATATGTAGAGgcCAGAAGTCTACGGATACACATTCGCTCTCATACTGGGGAACGGCCTCATGTTTGTGATATATGCAAGAAAAGCTTTACCCAGTTgtgcaatttagaaaaacatttacgAGTTCACACTGGAGAAAAGCCTTTTCTTTGTCCCATATGCGGAAAAggATTTACACAATCCGGGTATGTTGGAATTCACATGAGAACCCATACTGGTGAGAGACCTTATGTATGTACTACGTGTGGCAAAGCATTTGCAGGGTCAAACACACTAGCAATACATCAAAGGATCCATACGGGGGAAAAACCTTATCCCTGCAATATGTGTGGAAAATCATTCAGTCGCCATGAAACTCTTGTGATTCATACGAGATCTCATACTGGTCATAAACCCCATATCTGTTCAGTTTGTAAAAAAGGATTTACATCTTCTGGCCATTTGTCTGGACATATGAGGACGCATACCGGAGAAAAGCCTCACGGTTGTACCGTATGCGATAAAAgGTTTGCGGGATCAAGTAGTCTGAAAGCACATATGCGAGGTCACATAGGCGAAAAAccatatatttgtaaattatgtaataaatcattTGCACAACTAGCCAGCCTGCAACAGCATTCTCTTACACATTCTGCGGTTGCAAAGTCGCAAAGACCATCCAAAGTAGAAGCTGTACAAGTTGCCGAATTTAC
Protein Sequence: MDMSIYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLVSFASLQIREGDGLPSLMCVQCVLQCSRAYTFKQQCEKSENILRQYMTPEFQEQLSQHLANQTKVELQEQLQFPSNLDRVVADQLPAEFVSVEYGDQNISIVKDEFVLINEVTEEIFTKIDNREKSDKTVEEALNESQDEEKPLKYPCSKCKESFSLKVDLKIHMMTHPKELEHICHVCQKAFPEARILKRHLKIHLDKKPHQCDQCDMSFAESSNLTKHKKKHTGELRNVKGKPYLCSVCGRAFKWPSSLSKHMKYHTGHKLLSCEYCNKQYVEARSLRIHIRSHTGERPHVCDICKKSFTQLCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGERPYVCTTCGKAFAGSNTLAIHQRIHTGEKPYPCNMCGKSFSRHETLVIHTRSHTGHKPHICSVCKKGFTSSGHLSGHMRTHTGEKPHGCTVCDKRFAGSSSLKAHMRGHIGEKPYICKLCNKSFAQLASLQQHSLTHSAVAKSQRPSKVEAVQVAEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00956464; iTF_00070597; iTF_01258325; iTF_00465201; iTF_00466634; iTF_00741108;
90% Identity: iTF_00956464;
80% Identity: -