Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065426.1:7225706-7234970[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2e-05 0.0022 19.8 1.1 1 23 189 211 189 211 0.98

2 12 0.0036 0.4 12.7 3.4 1 23 217 239 217 239 0.97

3 12 0.0001 0.011 17.6 3.0 1 23 245 267 245 267 0.98

4 12 0.00024 0.027 16.4 1.4 3 23 281 301 279 301 0.95

5 12 0.00075 0.083 14.9 0.3 2 23 308 329 307 329 0.97

6 12 2e-06 0.00022 23.0 3.8 1 23 335 357 335 357 0.97

7 12 1e-06 0.00011 23.9 0.2 1 23 363 385 363 385 0.96

8 12 3e-06 0.00033 22.4 0.0 1 23 391 413 391 413 0.99

9 12 2.7e-07 3e-05 25.7 1.2 1 23 419 441 419 441 0.98

10 12 6.2e-06 0.00069 21.4 2.1 1 23 447 469 447 469 0.97

11 12 2.3e-06 0.00026 22.7 0.2 3 23 477 497 476 497 0.98

12 12 1.4e-05 0.0016 20.3 2.8 1 23 503 525 503 525 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2e-05	0.0022	19.8	1.1	1	23	189	211	189	211	0.98
2	12	0.0036	0.4	12.7	3.4	1	23	217	239	217	239	0.97
3	12	0.0001	0.011	17.6	3.0	1	23	245	267	245	267	0.98
4	12	0.00024	0.027	16.4	1.4	3	23	281	301	279	301	0.95
5	12	0.00075	0.083	14.9	0.3	2	23	308	329	307	329	0.97
6	12	2e-06	0.00022	23.0	3.8	1	23	335	357	335	357	0.97
7	12	1e-06	0.00011	23.9	0.2	1	23	363	385	363	385	0.96
8	12	3e-06	0.00033	22.4	0.0	1	23	391	413	391	413	0.99
9	12	2.7e-07	3e-05	25.7	1.2	1	23	419	441	419	441	0.98
10	12	6.2e-06	0.00069	21.4	2.1	1	23	447	469	447	469	0.97
11	12	2.3e-06	0.00026	22.7	0.2	3	23	477	497	476	497	0.98
12	12	1.4e-05	0.0016	20.3	2.8	1	23	503	525	503	525	0.97

Sequence Information

Coding Sequence: ATGGACATAAGCATTTATCTGACGGCGCCGCTGCAGCTGCACAAGATATGCCGCGCCTGTCTGACGGAAAAGGGGGACATGAGACCCCTGTTCGGCGCTTGCCTCGATGAAATGCTCCTGTCTTTCGCTTCGATTCAGGTACGCGAAGGAGACGGCTTACCAGATCTGATGTGTGTTCAGTGCGTGTTGCAGTGCAGTCGAGCTTACACTTTTAAGCAACAATGCGAGAAGTCCGAAAACATATTACGCCAGTACATAAGCCCCGAGTTTCAGGAACAACTCTCCCAACACATGGCGCAAACAACGAAAGAAGAATTGCAAGAGCAACTCCAGTTCGCCAACAACATCGAGCACGTGGTCGTCGACGAATTGCCTGCAGAATTTGTAACGTCGGACTACCAAGAGGAAAGCGATGTCGGTTTAGAAATAgtgaaaaatgaattatgtgATATGGATGTTGCAACGCAGATGGCCAACGTTGACATGGAAAAAGAAAATGGACTAATAGAAGACGAGGAGCTATCCGGTGAAGTGATAGAAATCCCAAGCAATAAGAAGTTGAAATATTCTTGCATGAAATGCAATCAATCTTTCACCTTGAAAGTCGATTTGAAAGTTCACATGATGAGTCACCCAAAAGATTTAGACCACGTCTGCCACATATGCCACAAAGGTTTCCCAGAAGCTCGGATATTAAGACGTCATTTAAAAATACACCTCGATAAGAAACCGCATCAGTGTGATCAGTGTGAAATGTCGTTTGCTGAAAGTTCGAATCTCAGCAAGCACAAGAAGAAACACACCGGGGAACTGAGGAACATAAAGGGGAAGCCTCATTTATGTTCAGTGTGTGGGAGAGCGTTCAAGTGGGCCTCGAGTCTCTCCAAACACATGAAGTACCACACCGGACACAAACTTCTATCATGTGAATACTGCAGTAAACAGTATGTTGAGGCCAGGAGTTTAAGAATACATGTACGCTCGCACACCGGCGAAAGGCCTCATGTCTGTGAAATATGTCAGAAGAGTTTTACGCAGTTGTGTAATTTAGAGAAGCATTTGAGAGTGCACACGGGTGAAAAGCCGTTCCTTTGTCCTATATGTGGAAAAGGATTTACACAATCGGGATATGTGAGCATTCACATGAGAACACACACTGGTGAGAGGCCTTACGTTTGTCCCACTTGTGGGAAGGCATTTGCTGGCTCAAATACCTTAGCAATACATCAGAGAATTCACACGGGAGAGAAGCCGTACCCCTGCAATATTTGCGGAAAATCGTTCAGTCGCCATGAGACACTAGTGATACACACAAGATCGCATACGGGGCACAAGCCTCACATATGTGGCGTTTGCAATAAGGGCTTCACATCTTCTGGGCACCTTTCTGGTCACATGAGAACACACACCGGAGAAAAGCCTCACGGTTGCCAAGTATGTGGAAAACGCTTTGCAGGATCAAGCAGTCTGAAAGCGCACATGCGAGGGCATTCCGGGGAAAAGCCCCACATATGTAAGCTGTGCCACAAAGGATTTGTGCAGTCTGCAACTTTGCAACAGCACATGATCACGCACTCGGTGATAGCAAAATCCAAACTGCCCAAGGTTGAAGCAGTACAAGTTGCTGAATTTACGGTCGGAGAAACTGTTCACACAGTCCAGGTGCAAGCAATAAGTTCTATATAA
Protein Sequence: MDISIYLTAPLQLHKICRACLTEKGDMRPLFGACLDEMLLSFASIQVREGDGLPDLMCVQCVLQCSRAYTFKQQCEKSENILRQYISPEFQEQLSQHMAQTTKEELQEQLQFANNIEHVVVDELPAEFVTSDYQEESDVGLEIVKNELCDMDVATQMANVDMEKENGLIEDEELSGEVIEIPSNKKLKYSCMKCNQSFTLKVDLKVHMMSHPKDLDHVCHICHKGFPEARILRRHLKIHLDKKPHQCDQCEMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCSKQYVEARSLRIHVRSHTGERPHVCEICQKSFTQLCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVSIHMRTHTGERPYVCPTCGKAFAGSNTLAIHQRIHTGEKPYPCNICGKSFSRHETLVIHTRSHTGHKPHICGVCNKGFTSSGHLSGHMRTHTGEKPHGCQVCGKRFAGSSSLKAHMRGHSGEKPHICKLCHKGFVQSATLQQHMITHSVIAKSKLPKVEAVQVAEFTVGETVHTVQVQAISSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01121019;
90% Identity: iTF_00466634; iTF_01258325;
80% Identity: -