Basic Information

Insect: Oryctes borbonicus
Gene Symbol: -
Assembly: GCA_902654985.1
Location: LR736864.1:5434517-5436954[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00076 0.063 13.8 0.1 2 23 191 212 190 212 0.97

2 20 0.00014 0.012 16.1 1.4 1 23 218 240 218 240 0.98

3 20 0.0003 0.025 15.0 0.3 6 23 249 266 249 266 0.99

4 20 4.5e-05 0.0038 17.6 3.6 2 23 299 320 298 320 0.97

5 20 4.9e-06 0.00041 20.6 2.1 1 23 325 347 325 347 0.99

6 20 0.0027 0.23 12.0 3.6 2 23 353 374 352 374 0.96

7 20 2.6e-06 0.00022 21.5 4.4 1 23 380 402 380 402 0.98

8 20 5.7e-08 4.7e-06 26.7 2.3 1 23 408 430 408 430 0.97

9 20 8.1e-07 6.8e-05 23.1 4.6 1 23 435 457 435 457 0.98

10 20 9e-07 7.6e-05 23.0 4.0 2 23 464 485 463 485 0.97

11 20 4.2e-07 3.5e-05 24.0 5.3 1 23 490 512 490 512 0.98

12 20 3.6e-05 0.003 17.9 5.5 2 23 519 540 518 540 0.97

13 20 1.3e-06 0.00011 22.5 3.4 2 23 546 567 545 567 0.97

14 20 8e-07 6.7e-05 23.1 0.9 2 23 574 595 573 595 0.97

15 20 8.2e-06 0.00069 20.0 2.1 2 23 601 622 600 622 0.96

16 20 6.9e-07 5.8e-05 23.3 1.1 2 23 629 650 629 650 0.98

17 20 1e-05 0.00087 19.6 3.0 1 23 655 677 655 677 0.98

18 20 0.00022 0.019 15.4 3.2 1 23 683 705 683 705 0.97

19 20 3.7e-05 0.0031 17.9 4.2 1 23 710 732 710 732 0.98

20 20 2.1e-06 0.00017 21.8 1.0 1 23 738 761 738 761 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00076	0.063	13.8	0.1	2	23	191	212	190	212	0.97
2	20	0.00014	0.012	16.1	1.4	1	23	218	240	218	240	0.98
3	20	0.0003	0.025	15.0	0.3	6	23	249	266	249	266	0.99
4	20	4.5e-05	0.0038	17.6	3.6	2	23	299	320	298	320	0.97
5	20	4.9e-06	0.00041	20.6	2.1	1	23	325	347	325	347	0.99
6	20	0.0027	0.23	12.0	3.6	2	23	353	374	352	374	0.96
7	20	2.6e-06	0.00022	21.5	4.4	1	23	380	402	380	402	0.98
8	20	5.7e-08	4.7e-06	26.7	2.3	1	23	408	430	408	430	0.97
9	20	8.1e-07	6.8e-05	23.1	4.6	1	23	435	457	435	457	0.98
10	20	9e-07	7.6e-05	23.0	4.0	2	23	464	485	463	485	0.97
11	20	4.2e-07	3.5e-05	24.0	5.3	1	23	490	512	490	512	0.98
12	20	3.6e-05	0.003	17.9	5.5	2	23	519	540	518	540	0.97
13	20	1.3e-06	0.00011	22.5	3.4	2	23	546	567	545	567	0.97
14	20	8e-07	6.7e-05	23.1	0.9	2	23	574	595	573	595	0.97
15	20	8.2e-06	0.00069	20.0	2.1	2	23	601	622	600	622	0.96
16	20	6.9e-07	5.8e-05	23.3	1.1	2	23	629	650	629	650	0.98
17	20	1e-05	0.00087	19.6	3.0	1	23	655	677	655	677	0.98
18	20	0.00022	0.019	15.4	3.2	1	23	683	705	683	705	0.97
19	20	3.7e-05	0.0031	17.9	4.2	1	23	710	732	710	732	0.98
20	20	2.1e-06	0.00017	21.8	1.0	1	23	738	761	738	761	0.98

Sequence Information

Coding Sequence: ATGTcagttaaaattatatttaaggaGGAAAGCGATCTAAATGACCATCCAGCTGATACCGTATTTGATTTAGCCGACTGCTGTAGAACATGTTTACGACATGAGGGCTCCTTGACACCAACAAAATCGTTGGATGGTGACTCCATAAAATTCCGTGATAAATTAGCGGCCTGTGTACCAGGAATTAGGTGGCTAAAGGAGGACGTGCCTTCTTTTATTTGCGGAACATGTatagaaaaattgagaattgcCTATGATTTTCAAACAGTTTGTTTACAATCAGATCAAACACTTCAATTACAATGGGAAACAAATCAAATCCAATATTCTAAGAGTGTAACTCCGGATCCTACGACAACAACTGACTTAGCAGAATGCGAAGAgaaagttattttaagtatgAAATGCGAGGAAACACAACTGCAGCCTTTACCTCAATGTATCCCAGATACCCCAGCTACAGAGCAATTTGAAGCAATGCAGACATTAGATAATTCTAGTAATGGCTGCCAGCTTTGCGGAAAAGAATTATGTGAACATATTCAAAGGCTTATAGACGAGAAACCTTTGCAATGTTCGGTATGCCTCATACAATTTACAACAACAGTAGAGCTAGTTATGCATATGCGAATTCATACCGGGGAAAAGAGGTATGTGTGTAATTTTTGCGAGAAGACTTATATTAATGAATCCGATTTTCTAGTCCACATACATTCGCATACAGGAGAAACACCATTTGCGTGTTGTGATAAAGAGTTTGCTACAAAAGATCTGTTGAACTCGCACTTAAAAACTCATACCGACAAGAGATTTTCACGACGTCGAGTCAGTAATAAATCATATACAAAATCTCAGCTTACAACACGTGTGGTAAAACGTACTGGAGAGAAGTCCTCCTGTAAATTATGTGGACAgaaatttagacatttttcCCAATTGTCGCTTCATATGCGGGAGCATAAAGGAAAACCATTTAAGTGCAGTCTCTGTGATAAAGTCTGCAGCTATGCTTGGGAGTTGCGAACACACATGATGAGACATACTGGTGAGAAATTGACTTGTTCGgtgtgtaataaaaaatttactagCAGATATACATTGGACTGTCACTTAAGAATTCATACTGGTGAAAATGTATTCAATTGCCTACATTGTGATCGTATTTTTCCACATGCAAGCTACTTAAAGACACATATGAGGACGCATACGGGTGACCAACCCTTCGCCTGTGGACATTGTGGTAGAAAGTTTACGCAGTCCTCCTCTTTAAATGTGCATATGAAGACACATACTGGGGAGAAGTTTTCCTGTAAATTATGCGATAAAAAGTTTGCGCACTCTTCCACTTTGACTATGCATATGCGGAAACATACGGGCGATAAACTTACGCGATGTCAAATCTGCAACAAATCATTTGCAAGACCTTCTCACCTCTCACATCACATGAAGGCGCATACTGGAAAGAAATTCTCCTGTAAATTATGCGATAAAAGGTTTTCACACTCTTCCACTTTAACTATGCATATGAGAAGACATACCGGCGATAAACTTTTGCGATGTGAAATCTGCAATAAGTCATATACAAAATCTTGTCATCTTTCAGAACACATGAGATCGCATACTGGAGAGAAGCTTTCCTGTAAGTTCTGCGATAAAAAGTTTACATACTCTTCCACTTTAACTATGCATATGAGAAGGCATACCGGCGATAAACTTTCGCGATGTCAAATTTGTAACAAATCATATATAAACACTTCTTTGCTTGCGCGACACATGAGGATGCACACTGGAGAGAAGCTTTCCTGCAAATTATGCGATAAAAAGTTTGCGCACACGTCCTCTTTAAACGTGCATATGAAAGGACATACCGGCTATAAGCGTCCCCGATGTGAAATCTGTAACAAATCATATATGAACTCTTCTCTGCTTGCACGGCACATGAAGACGCATACTGGAGAGAAGTTCTCCTGTACGTTATGCGGGCaggaatttagaaattgttcTCAATTGACAATCCACAGGCGGGAACACACGGGAAAACAGCCATATAAGTGCACTCTGTGCAACAAGGTATGTGATACTGCCACGCAATTACGAACGCATACAGTGAAACATACTGGAGAGAAGTTTTCCTGTAAAATGTGCGAACAGAAGTTTACACACTACTCTCAACTGTCTCTTCATATGCGGGAACACACGGGAAAGCAACCGTATAAGTGCACTCTCTGCGGCAAAGTATGTAGGTATCCCGGCGAATTACAAACGCATATTGCAACGAAACATACCGGTGTGAAATAG
Protein Sequence: MSVKIIFKEESDLNDHPADTVFDLADCCRTCLRHEGSLTPTKSLDGDSIKFRDKLAACVPGIRWLKEDVPSFICGTCIEKLRIAYDFQTVCLQSDQTLQLQWETNQIQYSKSVTPDPTTTTDLAECEEKVILSMKCEETQLQPLPQCIPDTPATEQFEAMQTLDNSSNGCQLCGKELCEHIQRLIDEKPLQCSVCLIQFTTTVELVMHMRIHTGEKRYVCNFCEKTYINESDFLVHIHSHTGETPFACCDKEFATKDLLNSHLKTHTDKRFSRRRVSNKSYTKSQLTTRVVKRTGEKSSCKLCGQKFRHFSQLSLHMREHKGKPFKCSLCDKVCSYAWELRTHMMRHTGEKLTCSVCNKKFTSRYTLDCHLRIHTGENVFNCLHCDRIFPHASYLKTHMRTHTGDQPFACGHCGRKFTQSSSLNVHMKTHTGEKFSCKLCDKKFAHSSTLTMHMRKHTGDKLTRCQICNKSFARPSHLSHHMKAHTGKKFSCKLCDKRFSHSSTLTMHMRRHTGDKLLRCEICNKSYTKSCHLSEHMRSHTGEKLSCKFCDKKFTYSSTLTMHMRRHTGDKLSRCQICNKSYINTSLLARHMRMHTGEKLSCKLCDKKFAHTSSLNVHMKGHTGYKRPRCEICNKSYMNSSLLARHMKTHTGEKFSCTLCGQEFRNCSQLTIHRREHTGKQPYKCTLCNKVCDTATQLRTHTVKHTGEKFSCKMCEQKFTHYSQLSLHMREHTGKQPYKCTLCGKVCRYPGELQTHIATKHTGVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00956453;
90% Identity: iTF_00956453;
80% Identity: -