Mbor006779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Marronus borbonicus
Gene Symbol
-
Assembly
GCA_902655005.1
Location
LR737380.1:27662023-27665055[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00051 0.041 14.4 0.2 2 23 190 211 189 211 0.97
2 20 0.00015 0.012 16.1 1.4 1 23 217 239 217 239 0.98
3 20 0.00032 0.026 15.0 0.3 6 23 248 265 248 265 0.99
4 20 4.8e-05 0.004 17.6 3.6 2 23 298 319 297 319 0.97
5 20 5.3e-06 0.00043 20.6 2.1 1 23 324 346 324 346 0.99
6 20 0.0021 0.17 12.5 4.5 2 23 352 373 351 373 0.97
7 20 2.8e-06 0.00023 21.5 4.4 1 23 379 401 379 401 0.98
8 20 6.1e-08 5e-06 26.8 2.3 1 23 407 429 407 429 0.97
9 20 8.7e-07 7.2e-05 23.1 4.6 1 23 434 456 434 456 0.98
10 20 9.7e-07 7.9e-05 23.0 4.0 2 23 463 484 462 484 0.97
11 20 5.6e-07 4.6e-05 23.7 5.4 1 23 489 511 489 511 0.98
12 20 3.9e-05 0.0032 17.9 5.5 2 23 518 539 517 539 0.97
13 20 1.4e-06 0.00011 22.5 3.4 2 23 545 566 544 566 0.97
14 20 8.5e-07 7e-05 23.1 0.9 2 23 573 594 572 594 0.97
15 20 8.8e-06 0.00072 20.0 2.1 2 23 600 621 599 621 0.96
16 20 7.4e-07 6.1e-05 23.3 1.1 2 23 628 649 628 649 0.98
17 20 0.00037 0.031 14.8 2.9 1 23 654 676 654 676 0.98
18 20 0.00024 0.02 15.4 3.2 1 23 682 704 682 704 0.97
19 20 0.00029 0.024 15.2 3.5 1 23 709 731 709 731 0.98
20 20 5.1e-06 0.00042 20.7 1.2 1 23 737 760 737 760 0.98

Sequence Information

Coding Sequence
ATGtcagttaaaattatatttaaggaGGAAAGCGATCTAAATGACCATCCAGCCGATACCGTATTTGATTTAGCCGACTGCTGTAGAACATGTTTACGACATGACGGCTCCTTGACACCAACAAATTCGTTGGATGGTGACTCCATAAAATTCCGTGATAAATTAGCGGCCTGTGTACCAGGAATTAGGTGGCTAAAGGAGGACGTGCCTTCTTTTATTTGCGGAATATGTATAGAAAAATTGAGAATTGCGTATGATTTTCAAACAGTTTGTTTACAATCGGatcaaacacttcacttacagtGGGAAACAAATCAAATCCAATATTCTAAGAGTGTAACTCCGGATCCTACGACAACAACTGACTTAGCAGAATGTGAAgagaaagttattttaagtatGAAATGTGAGGAAACACAACTGCAGCCTTTACCTCAATGTATCCCAGATACCCCAGCTACGGAGGAATTTGAAGCAATGCAGACAGATAATTCTAGTAATGGCTGCCAGCTTTGTGGAAAAGAATTATGTGAACATATTCAAAGGCTTATAGATGAGAAACCTTTGCAATGTTCGGTATGCCTCACACAATTTACAACAACAGTTGAGCTAGTTATGCATATGCGAATTCATACCGGGGAAAAGAGGTATGTGTGTAATTTTTGCGAGAAGACCTACATTAATGAATCCGATTTTCTAGTCCACATACATTCGCATACAAGAGAAACACCATTTGCTTGTTGTGATAAAGAGTTTGCTACAAAAGATCTGTTGAACTCGCACTTAAAAACTCATACCGACAAGAAATTTTCACGACGTCGAGTCAGTAATAAATCATATACAAAATCTCAGCTTACAACACGCGTGGTAAAACGTACTGCAGAGAAGTCCTCCTGTAAATTATGTGGACAgaaatttagacatttttctcaattatcgCTTCATATGCGGGAGCATAAAGGAAAACCATTTAAGTGCAGTCTCTGTGATAAAGTCTGCAGCTATGCTTGGGAGTTGCGAACACACATGATGAGACATACTAGTGAGAAATTGACTTGTTCGgtgtgtaataaaaaatttactagCAGATATACATTGGACTGTCACTTGAGAACTCATACTGGTGAAAATGTATTCAATTGCCTACATTGTGATCGTATTTTTCCACATGCAAGCTACTTAAAGACACATATGAGGACGCATACGGGTGACCAACCCTTTGCCTGTGGACATTGTGGTAGAAAGTTTACACAGTCCTCCTCTTTAAATGTGCATATGAAGACACATACTGGGGAGAAGTTTTCCTGTAAATTATGTGATAAAAAGTTTGCGCACTCTTCCACTTTAACTATGCATATGCGGAAACATACCGGCGATAAACTTACGCGATGTCAAATCTGCAACAAATCATTTGCAAGACCTTCTCACCTCTCACATCACATGAAGGCGCATACTGGAAAGAAATTCTCCTGTAAATTATGCGATAAAAAGTTTTCACACTCTTCCACTTTAACTATGCATATGAGAAGACATACCGGCGATAAACTTTTGCGATGTGAAATCTGCAATAAATCATATACAAAATCTTGTCATCTTTCAGAACACATGAGGTCGCATACTGGAGAGAAGCTTTCCTGTAAGTTCTGCGATAAAAAGTTTACATACTCTTCCACTTTAACTATGCATATGAGAAGGCATACCGGCGATAAACTTTCGCGATGTCAAATCTGTAACAAATCATATATAAACACTTCTTTGCTTGCGCGGCACATGAGGATGCATACTGGAGAGAAGCTTTCCTGCAAATTATGCGATAAAAAGTTTGCGCACACTTCCTCTTTAAACGTGCATATGAAAGGACATACCGGCTATAAGCGTCCCCGATGTGAAATCTGTAACAAATCATATATGAACTCTTCTCTGCTTGCACGGCACATGAAGACGCATACTGGAGAGAAGTTCTCCTGTACGTTATGCGCGCAGGAATTTAGAAATTGTTCTCAATTGACAATCCACAGGCGGGAACACACGGGAAAACAGCCATATAAGTGCACTCTGTGCAACAAAGTATGTGATACTGCCACGCAATTACGAACGCATACAGTGAAACATACTGGAGAGAAGTTTTCCTGTAAATTGTGTGAACAGAAGTTTACACACTACTCTCAACTGTCTCTTCATGTGCGGGAACATACGGGAAAGCAACCATATAAGTGCACTCTCTGCGACAAAGTATGTAGGTATCCCGGCGAATTGCAAACGCATATTGCAACGAAACATACCGGTGTGAAATAG
Protein Sequence
MSVKIIFKEESDLNDHPADTVFDLADCCRTCLRHDGSLTPTNSLDGDSIKFRDKLAACVPGIRWLKEDVPSFICGICIEKLRIAYDFQTVCLQSDQTLHLQWETNQIQYSKSVTPDPTTTTDLAECEEKVILSMKCEETQLQPLPQCIPDTPATEEFEAMQTDNSSNGCQLCGKELCEHIQRLIDEKPLQCSVCLTQFTTTVELVMHMRIHTGEKRYVCNFCEKTYINESDFLVHIHSHTRETPFACCDKEFATKDLLNSHLKTHTDKKFSRRRVSNKSYTKSQLTTRVVKRTAEKSSCKLCGQKFRHFSQLSLHMREHKGKPFKCSLCDKVCSYAWELRTHMMRHTSEKLTCSVCNKKFTSRYTLDCHLRTHTGENVFNCLHCDRIFPHASYLKTHMRTHTGDQPFACGHCGRKFTQSSSLNVHMKTHTGEKFSCKLCDKKFAHSSTLTMHMRKHTGDKLTRCQICNKSFARPSHLSHHMKAHTGKKFSCKLCDKKFSHSSTLTMHMRRHTGDKLLRCEICNKSYTKSCHLSEHMRSHTGEKLSCKFCDKKFTYSSTLTMHMRRHTGDKLSRCQICNKSYINTSLLARHMRMHTGEKLSCKLCDKKFAHTSSLNVHMKGHTGYKRPRCEICNKSYMNSSLLARHMKTHTGEKFSCTLCAQEFRNCSQLTIHRREHTGKQPYKCTLCNKVCDTATQLRTHTVKHTGEKFSCKLCEQKFTHYSQLSLHVREHTGKQPYKCTLCDKVCRYPGELQTHIATKHTGVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01121009;
90% Identity
iTF_01121009;
80% Identity
-