Basic Information

Insect: Oryctes borbonicus
Gene Symbol: UBTF
Assembly: GCA_902654985.1
Location: LR736882.1:5124115-5129407[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.3e-19 1.7e-16 60.4 1.9 1 68 250 317 250 318 0.97

2 5 7.3e-09 3.7e-06 27.3 3.1 1 68 342 408 342 409 0.93

3 5 2.8e-07 0.00014 22.2 3.3 2 68 441 505 440 506 0.86

4 5 2.2 1.1e+03 0.1 5.4 15 59 538 582 535 587 0.87

5 5 0.69 3.6e+02 1.7 10.4 13 68 567 624 566 625 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.3e-19	1.7e-16	60.4	1.9	1	68	250	317	250	318	0.97
2	5	7.3e-09	3.7e-06	27.3	3.1	1	68	342	408	342	409	0.93
3	5	2.8e-07	0.00014	22.2	3.3	2	68	441	505	440	506	0.86
4	5	2.2	1.1e+03	0.1	5.4	15	59	538	582	535	587	0.87
5	5	0.69	3.6e+02	1.7	10.4	13	68	567	624	566	625	0.80

Sequence Information

Coding Sequence: ATGGGACACAAGAAGAATAAGAAGGAACATATAGATGAGAAACATTCACATCTTGGAAATGCAGAGATGGTCACACACGAACctaaaaaagttaaaaggaaaaaacatgaaaatatagAAGCTGTGCCAGAGAAACATGAACGTAATAACGCccctgaaaaaaagaaaaggaaggaaaagaAGGCACATTTTAAGATTGAAGCTGTTGACACCATATCAGATAACAAAGCCGAAGAAATAAGTCACACTCTGATATTGAACGATATTTTACTGAATGACGATCATACTAAGCATCAAAACAATGAATTAAATCATGCAGTGTCTTCGATCAAGGAGATGAAGGACCACCAAAACTTAATACCACCTCAGGAAGACGACCAAAGTTTACAACAAATTGAAGTTAAGATCGAGAAATCGCATAAGTCAAAGAAGAACAACACAATCGAGGAAGATAAGAGCATCGATTGGCCCGAAAAAGATCTAAGCGAGTTGTTTAAACGTATGGAATCTGCTATACCGGAAAAAGATACGTTAGCTTATAGTACGAGGGTTGAAAAGATAAATTGGGATAATATTGCTTTTAAGAATTATACAGGAGAAGAATGTAAAGCTACATGGCAATTAGTACAGAAGAGACTGAGGAGATTCAGGTTATTAAATGAACTACTACAGGATGCTAAGGAATGGACAAGAAAGCCATGGACTAACTTTTACGGTGGTCAAAAAACCAAAAGACATCCCGATATGCCAAGACGGCCATTATCAACATATATGTTATTTTACCTTcacaaaaaagacaaaattatcGTTGAGAACCCAGGTTTAGAAAtgACCGAGATCTCAAAAATTATAACGCAAATGTACAAAGCTTTATCTCCAGCAAAACGAGAGAAGTACATGAAAGAGGCAGCTGAGAAACGTAGAACTTATGAAATCGAATTGGAAGAATTCTATCGACAGCATCCTGAGTTTTcgagaaatatggaaaagacCATCCAACAAAAACAAACCGTAGAACCAGGTCCGAAGAAACCTAATACTCCCTTCGGATTATTCTATGAGAGTCAATTCAAACTATTAGATCCGAACGTCTCGATTGATAAGCATAGCATTAAGGAACAAATAAAGGAGCAGTGGAAGAATATGTCTGACAAAAAGAAAGTTGTCTGGATCAACTGGGCGGCAGAAGCGGAAGCTAAGTATCAGgacgaattgaaaaattatatctcGCAAAATCCCGATTTCGTACCGGTGACTGTTAAGCCGGTATTAACCAAAGAAGAAAAGATGTTAAAGGAGAGAATGGCCGGCAAACCGATGAAACCACCAAATTCCGCTTATAGCTTATTCTCAAGGATGATGCTTCAAAGTGAAGAGATCAAAGAAGTTAATCCCAAAGATAGGATGATGTACATCGCCGAGAAGTGGAAGAACTGTACTGAGGATGAACGAAAAGAGTACAGCGAAAGAATTTTACACTTAAGAGAGCAATACAAGTTAGACTTCGCGTCATACTTAGAGTCTTTGCCGGAAGAAAAAAGGcaagaagaaataagaagtaCTCTGCCGAAAAGAAGGAGAACATTATGCAAAACAGATGAAAGagaacttaaaaagaaaaaattagaaacggaACCAACGGAAAATAATAACACGAAAATCGATAAGAAATTAGACAAAAAgactgatgatttaaaaaagatcaaaaagGAAAAGTTGGACGAAGAGAAGCccgatattaaagaagataaaaaactAAGTCCTTTCGCGAAACCTAAGTACTGGAACCGCatgaaaaaagaagagaagaggACATTTAAAAACGCAATGTTAAAACTTAAAGAGCACTTAGATTCTCGTTTCGAAAAATATGTAAGCTGTAACTGA
Protein Sequence: MGHKKNKKEHIDEKHSHLGNAEMVTHEPKKVKRKKHENIEAVPEKHERNNAPEKKKRKEKKAHFKIEAVDTISDNKAEEISHTLILNDILLNDDHTKHQNNELNHAVSSIKEMKDHQNLIPPQEDDQSLQQIEVKIEKSHKSKKNNTIEEDKSIDWPEKDLSELFKRMESAIPEKDTLAYSTRVEKINWDNIAFKNYTGEECKATWQLVQKRLRRFRLLNELLQDAKEWTRKPWTNFYGGQKTKRHPDMPRRPLSTYMLFYLHKKDKIIVENPGLEMTEISKIITQMYKALSPAKREKYMKEAAEKRRTYEIELEEFYRQHPEFSRNMEKTIQQKQTVEPGPKKPNTPFGLFYESQFKLLDPNVSIDKHSIKEQIKEQWKNMSDKKKVVWINWAAEAEAKYQDELKNYISQNPDFVPVTVKPVLTKEEKMLKERMAGKPMKPPNSAYSLFSRMMLQSEEIKEVNPKDRMMYIAEKWKNCTEDERKEYSERILHLREQYKLDFASYLESLPEEKRQEEIRSTLPKRRRTLCKTDERELKKKKLETEPTENNNTKIDKKLDKKTDDLKKIKKEKLDEEKPDIKEDKKLSPFAKPKYWNRMKKEEKRTFKNAMLKLKEHLDSRFEKYVSCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01498853;
90% Identity: iTF_00956275; iTF_00626174; iTF_00627179;
80% Identity: -