Oinc036114.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- znf711
- Assembly
- GCA_948252205.1
- Location
- OX411755.1:25587321-25588748[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.6e-06 0.12 13.8 0.2 8 49 172 214 166 217 0.87 2 5 0.0006 27 6.3 0.1 21 44 246 269 238 276 0.86 3 5 2.6e-05 1.2 10.6 0.2 22 46 303 327 299 333 0.88 4 5 0.096 4.3e+03 -0.8 0.0 30 53 339 362 332 363 0.76 5 5 5e-05 2.2 9.7 0.4 7 50 369 412 364 414 0.87
Sequence Information
- Coding Sequence
- ATGGCTACAAAACTGTGTAGATTGTGTTGTCAGAGTGAAGGCACGTCTTACATTTTTAGCAATGAAATTGATGAAATTGCAATAAGTTCAAAAATAATGTATTGTTGTTCAAATGTAAATATTAAAGACGGGGATGGACTTCCCTTGTATATTTGTGAAACCTGCCTAAAAGAGCTCGCAGCCTGCTATCAATTTGTACTAAAATGCGAAGCTTCTGACAAGAAATTAAGATCTCAAGCTTTCGAAGTAATTACCCAAACTATTTCAGATTTCAATGACTGCTCGCCGAAAATTGAAGTAAAACTTGAATTAGACTGTAACAGCAACGATGGTCACCTTTACGAAGATTTACAAAATGATGATATTGCTCTTGAACAAATAAGGCGAGATAATCTAGAAATAAAATTGGAAAATGTAGATTCCAAAATATCACCTAAACGAAAACTATCCAAACAAAGAGCTAAATACAAAGGTCTAGAGAAATGTACTTGCTCAGTTTGTGGCCGAACATGTGCTAACCCATCCACCTTTAAGGCTCACATGAGATCCCATACTAATGAGAAACCATACCTTTGTCCTTTATGTGATAAGAAATACAAAGACAACGGCACCCTCAAACGACACATGGACAGAAACCATGTCCAACAGAAGCGGCAGCGGAACTTCATTTGTGAAAACTGTGGCAAAAGCTTCTACTCTAAGAATGATGTGAAAGTTCATATGCGTACTCACACGGGGGAAACACCATATAGTTGCTCCATATGCAACCTCAGATTCACACAGACCAGTGCATTGCAAAGACATAAAAAGCGGCACACTGGTGAGAAGGAACACTTGTGCACGGCTTGTCCAAAGAGGTTCTGTACTAAGGCAGAACTAAAAAGTCACCTCTTGGCACACAGTACTGAGAAAAAGTACTCTTGTCCTCTCTGTAATGTATTATTTAAGTATCAAAGCAATTTGAGGAAACATGTGAGACTGCACTCTGAACCAAATAGATTTGTGTGCAATCACTGTGGACGTACATTCAATGTTAAAGGGAACCTGAAGAGCCACATTGACAAGCAACATTCTGAGAAATCTGGTCACTGTACTGTTTGTTCAAAACATGTTGCAAATATGGAGGTTCACATGTGGAGACATACGGGACAAAGGCCATTGAAGTGTGAGCTCTGTACAAGTACCTTTTATGAAATGAAGTCTTTGGCTCGCCATATGAACTATAGACATAAGGCAACTGATAGATTTAAGTGTACAGCTAAAGAGTGCTTGATGACATTCCCATCAAAGCCAATGCTGGACTTCCATACTGCTAAGCTTCATAGTACCCACATCCCATTTCCATGTGATAGATGCACTAGAGCATTTTACAGGAAGAATGATCTTGCCAGGCATAAAATTGCCACTCATAAAGAAAGACTCACTTAA
- Protein Sequence
- MATKLCRLCCQSEGTSYIFSNEIDEIAISSKIMYCCSNVNIKDGDGLPLYICETCLKELAACYQFVLKCEASDKKLRSQAFEVITQTISDFNDCSPKIEVKLELDCNSNDGHLYEDLQNDDIALEQIRRDNLEIKLENVDSKISPKRKLSKQRAKYKGLEKCTCSVCGRTCANPSTFKAHMRSHTNEKPYLCPLCDKKYKDNGTLKRHMDRNHVQQKRQRNFICENCGKSFYSKNDVKVHMRTHTGETPYSCSICNLRFTQTSALQRHKKRHTGEKEHLCTACPKRFCTKAELKSHLLAHSTEKKYSCPLCNVLFKYQSNLRKHVRLHSEPNRFVCNHCGRTFNVKGNLKSHIDKQHSEKSGHCTVCSKHVANMEVHMWRHTGQRPLKCELCTSTFYEMKSLARHMNYRHKATDRFKCTAKECLMTFPSKPMLDFHTAKLHSTHIPFPCDRCTRAFYRKNDLARHKIATHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00928948;
- 90% Identity
- iTF_01119616;
- 80% Identity
- iTF_01119616;