Oinc027493.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411769.1:9937356-9943777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.029 4 9.3 0.4 1 23 159 181 159 181 0.94 2 16 1.4 1.9e+02 4.1 0.0 3 23 211 232 209 232 0.88 3 16 0.0046 0.63 11.9 0.4 2 23 253 275 252 275 0.95 4 16 0.0065 0.89 11.4 2.0 3 23 282 303 280 303 0.93 5 16 0.001 0.14 13.9 0.8 1 23 308 331 308 331 0.96 6 16 0.22 30 6.6 0.1 2 23 334 356 333 356 0.93 7 16 0.73 1e+02 4.9 1.1 2 21 363 382 362 383 0.91 8 16 0.0019 0.27 13.0 0.5 1 23 442 465 442 465 0.92 9 16 0.12 17 7.4 0.2 2 23 493 515 492 515 0.91 10 16 0.034 4.7 9.1 0.4 3 23 539 561 537 561 0.95 11 16 0.00043 0.059 15.1 0.6 3 20 568 585 566 589 0.90 12 16 0.87 1.2e+02 4.7 0.2 1 23 594 617 594 617 0.96 13 16 9.7e-05 0.013 17.1 0.4 2 23 623 645 623 645 0.92 14 16 0.00044 0.061 15.1 4.2 1 23 649 672 649 672 0.97 15 16 0.0012 0.16 13.7 2.4 1 23 678 700 678 700 0.98 16 16 0.066 9.1 8.2 0.7 1 23 706 729 706 729 0.93
Sequence Information
- Coding Sequence
- ATGCCCGAGTCCGGCGTTGTCCGCTCTCCGACGATGCCCGGTGCGTCTGCTGCGGGCCGGGTGAGTGGAAGTGACCTCCCTCTCCCTTTCCGCAGTCTTCTTCTGCGAGACGACTGTTTCGCAGAAGGATACCACCAGGATTCCTCGCTGCCAACCATTGACTCTACTACGGCCAGCAGCGACAGGTCATTGCCTACTCCTGAGATGAGAaaccaaatggaactgaataccaATAAAAAACCGAGCAAAAGCAAAAACATGGAAACCAAAAGCAAGGAAAGCAAAAGCAAGGAAAGCAAAAACAACGAAAGCAAAAGCAAGGAAAGCAAAAACAAGGAAATCAAAAACAAGAAAAGCAAAAACAAGGAACGCAAAAGCAAGGAAAAAAAACTACCTTCATCGACAAGGAGGCGACGGAACCTACAAATTCTATTCAACAACACATCAATTATTCCTTTTAAATGGCGCGGAAAGTATTTGTGTTTCTTTTGCAGCAAAGATGTCACCGATTATGCAGAGTTGAGAGCTCATACGAAAGCACATGGCAACTGTTCCATAAAAGACCATTGCCTTAAAGTCCTAAAAGGAGGAAAGCAGATGGAAATTAAACTGGACATTTCACTTATAAATTGTGAAATCTGTGACGTAACATTGAACTCATTCGATGAGATCATCACTCATTTGTTTGAAGAACACGAACTTGAATACGATAAAGAAGTAGAAATGGCTATAGAAGAATATAAGCTTGCTGATCTCAGTTGCACAGGTTGCACAGAAAAGTTTACGTATTTTGGCTATCTAGTCTCCCATGTTAATAAAGAACACCCAAAGAACTGCATCATTTGCGAAAACTGCAATAAAAAATTCAACAAAATGAGAGATCTATTATCTCACATACATAACTATCACCGAGAAGGAGGATATCAATGTGAAATGTGCCCTCAAGTCTTCAGCTCATTGAATATTCTAAGAAAGCACCGAAATAACAGGCATTTGACTCGATGCAACATTTGCGATTTGAAACTACCGTCAGCTGCTTTGAGACAAAAACACCTCGAGTTAGAACATCCGGACGACGGGTCTCTGCAGTGTGATGCCTGTTTGAAAGAGTTCCACACGAAACAAGGGCTTAAAATGCATTCAAAAAAATGTAAAGGGGAAGAGCTATTCGGCATCGCATTCAAAGAAGAACACGTTGCCATGGATACAGACCTAAATTACGAGGGTCGTTCAAACAGACCCTGCGTCAAACAAATCAGACAAAATATAGTCACAATCATAAACATGTCTACGGCAATACCTTTTAATTTTTACAAGAATAAGTTCAACTGCTTTTACTGCTCGAAAGATTTTGTTGATTCGGAATTGTTGAGGGAACACTCTGCTTCAGAGCACCCTGTTTGCGATGTTAAATCGAAATGCATTAGGAAGTGCAGGGAGTCCGTCGTTTGCGTCAAAGTCGATGTTTCAAGACTCGAATGCAAAGTTTGCTACGAGACAATGACTGATTTGGATCATCTGATCGATCACTTAATAGATACACACAATGCGAATTACGATAAATCGATAACATCGTGTCTTCAGCCTTTTAAGCTTGTTAAAGACAAAATGGCCTGTCCAGTCTGCCACGACGCAGTATTCACTTTCTTCGGAACGCTTCTAAAACACATGAACACGGAACATACGAACAACCATATTATTTGCGTTTACTGCGGCCAATCCTTTCGTAGAGATCAAAACTTACGCGTTCATATTTGGCGACATCACAGAGCTGGGAGATTTAAATGTACTGTTTGTGCTGCTGAATGCCAAATACCGTCTCGCTTGTACATACACATGGCAACAGCACACGGCGTTAAAGCCGCCAAATGTCCAAAATGCCCCGAGTCATTCTCCACGCAATATGAGAGACAGAAACATTTGATCGATGCCCACAACACTGGCCACAAATGCACTTACTGTGGCAAGCTGTTTACAAGAATGTCCTTCATGAGTGATCATATAAGAAGGACGCATATGAAAGAGAAGACTTATGAATGTTATGTTTGCTATACGAGGTTCTTTAACACTGTGCTGTTGAAGAAGCATATGTTGAAACATAGTGGGCAGAAGAAATATGCGTGCGATGTGTGCGGGGAACGGTTCTACTGGCGAAAGACTATGAAGACTCATAGGGATAGGCTGCATGCTAAACAGCTATATCCTATCCCTCCACCGCCTCCGTTTATACCAACTATCCCTCCAGCTGTCCCCCGACGCGAAGGGGTGATCAAAAGGCTTTATGACGCCTGCCAAGACATATAG
- Protein Sequence
- MPESGVVRSPTMPGASAAGRVSGSDLPLPFRSLLLRDDCFAEGYHQDSSLPTIDSTTASSDRSLPTPEMRNQMELNTNKKPSKSKNMETKSKESKSKESKNNESKSKESKNKEIKNKKSKNKERKSKEKKLPSSTRRRRNLQILFNNTSIIPFKWRGKYLCFFCSKDVTDYAELRAHTKAHGNCSIKDHCLKVLKGGKQMEIKLDISLINCEICDVTLNSFDEIITHLFEEHELEYDKEVEMAIEEYKLADLSCTGCTEKFTYFGYLVSHVNKEHPKNCIICENCNKKFNKMRDLLSHIHNYHREGGYQCEMCPQVFSSLNILRKHRNNRHLTRCNICDLKLPSAALRQKHLELEHPDDGSLQCDACLKEFHTKQGLKMHSKKCKGEELFGIAFKEEHVAMDTDLNYEGRSNRPCVKQIRQNIVTIINMSTAIPFNFYKNKFNCFYCSKDFVDSELLREHSASEHPVCDVKSKCIRKCRESVVCVKVDVSRLECKVCYETMTDLDHLIDHLIDTHNANYDKSITSCLQPFKLVKDKMACPVCHDAVFTFFGTLLKHMNTEHTNNHIICVYCGQSFRRDQNLRVHIWRHHRAGRFKCTVCAAECQIPSRLYIHMATAHGVKAAKCPKCPESFSTQYERQKHLIDAHNTGHKCTYCGKLFTRMSFMSDHIRRTHMKEKTYECYVCYTRFFNTVLLKKHMLKHSGQKKYACDVCGERFYWRKTMKTHRDRLHAKQLYPIPPPPPFIPTIPPAVPRREGVIKRLYDACQDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906432;
- 90% Identity
- iTF_01117629;
- 80% Identity
- -