Ogot059369.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459061.1:11529380-11531380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.018 3.6 10.3 0.4 1 23 58 80 58 80 0.97 2 16 2.4 4.9e+02 3.6 0.0 3 23 110 131 108 131 0.87 3 16 0.0047 0.93 12.1 0.4 2 23 152 174 151 174 0.95 4 16 0.0045 0.89 12.2 1.1 3 23 181 202 179 202 0.95 5 16 0.0011 0.22 14.1 1.0 1 23 207 230 207 230 0.96 6 16 0.22 44 6.8 0.1 2 23 233 255 232 255 0.93 7 16 0.44 88 5.9 0.9 2 21 262 281 261 282 0.92 8 16 0.002 0.4 13.3 0.5 1 23 341 364 341 364 0.92 9 16 0.32 64 6.3 0.3 2 23 392 414 391 414 0.91 10 16 0.035 7 9.3 0.4 3 23 438 460 436 460 0.95 11 16 0.00044 0.087 15.3 0.6 3 20 467 484 465 488 0.90 12 16 0.99 2e+02 4.8 0.3 1 23 493 516 493 516 0.95 13 16 0.00011 0.022 17.2 0.4 2 23 522 544 522 544 0.92 14 16 0.00033 0.065 15.7 4.6 1 23 548 571 548 571 0.97 15 16 0.0012 0.24 14.0 2.4 1 23 577 599 577 599 0.98 16 16 0.068 14 8.4 0.7 1 23 605 628 605 628 0.93
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAAACATCGAAAGCGAAAGCAAGGAAAGCAAAAGCAAGAAAAGCAAAAGCAGGGAACGCAAAAGCAAGGAAAAAAAACTATCTTCATCGATGAGGAGGCGACGGAACCTCCAAATTCTTTTCAACAACACATCAATTATTCCTTTTAAATGGCGCGGAAAGTATATGTGTTTCTTTTGCAGCAAAGATGTCAACGATTATGCAGAGTTGAGAGCTCATACGAAAGCACATGGCAACTGTTCCATAAAAGACCACTGCCTAAAAGTCCTAAAAGGAGGAAAGCATATGGAAATTAAACTGGACATTTCTCTTATAAATTGTGAAATCTGTGACGTAACATTGAACTCAATCGATGAAATTATCACTCATTTGTTTGAAGAACATGAACTCGAATACGATAAAGAAGTAAAAATGTCTATAGAAGAATATAAGCTTGCTGATCTCAGTTGCACAGGTTGCACAGAAAAGTTTACATACTTTGGGTATCTAGTCTCCCATGTCAATAAAGAACACCCAAAGAACTGCATCATTTGCGAAAACTGCAATCAAAAATTCAACAAAATGAGAGATCTATTTTCTCACATAAAAAACTATCACCGAGAAGGAGGGTATAAATGCGAAATGTGCCCCCAAGTCTTCAGCTCATTGAATATTCTAAGAAAGCACCGAAACAATAGGCATTTGACTCGATGCAACATTTGCGATTTGAAACTTCCGTCAGCTGCTTTGAGACAAAAACACCTCGAGTTAGAACATCCGGACGACGGGTCTCTGCAGTGTGATGCCTGCTTGAAAGAGTTCCACACGAAACAAGGGCTAAGAATGCATTCAAGGAAATGTAAAGGGGAAGAGCTATTCGGAATCGCATTCAAAGAAGAACACGTTGCCATGGACACCGACCTGAATTACGAGGATCGTTCCAACAGACCCTGCGTCAAACAAATCAGACAAAATATAGTCACAATCATAAACATGTCTACGGCAATACCGTTTAGTTTTTTCAAGAATAAGTTCAACTGCTTTTACTGCTCGAAAGATTTTGTTGATTCGGAATTGTTGAGGGAACACTCTGCTTCAGAGCACCCTGTTTGCGATCTCAAAGCGAAATGTATTAGGAAGTGCAGAGAGTCCGTCGCTTGCGTCAAAGTCGATGTTTCAAGACTCGAATGCAAACTTTGCTACGAGACAATGACTGATTTGGAACATCTGATCGATCACTTAATAGATACACACAATGCGAATTACGATAAATCGATAACATCGTGTCTTCAGCCTTATAAGCTTGTAAAAGACAAAATGGCCTGTCCAGTCTGCCACGACGCTGTATTCACTTTCTTCGGAACGCTTCTAAAACACATGAACACGGAACATACAAACAACAATATAATTTGCGTTTATTGTGGCCAATCTTTCCGTAGGGATCAAAACTTACGCGTTCACATTTGGCGTCATCACAGAGCTGGgaggtttaaatgtaatgttTGTGCTGCCGAATGCCAAATACCGTCTCGCTTATACATGCACATGGCTACAGCACACGGCGTCAAAGCCGCCAAATGCCCGAAATGCCCTGAGACATTCTCCACGCAATATGAGAGACAGAAACATTTGATCGACGCCCACAATACTGGCCACAAATGCTCTTACTGTGGAAAGCTGTTTACAAGAATGTCTTTCATGAGTAATCATATAAGGAGGACGCATATGAAAGAGAAGACTTACGAGTGTTATGTTTGCTATACGAGGTTCTTTAACACTGTGCTGTTGAAGAAGCATATGTTGAAACATAGTGGACAGAAGAAATATGCGTGCGATGTGTGCGGGGAACGGTTCTACTGGCGGAAGACTATGAAGACTCATAGGGATAGGCTGCATGCTAAACAGCTATATCCTCCTCCTCCACCACCTCCGTTTATACCGACTATACCTCCAGCTGTTCCCCGACGCGAAGGGGTGATCAAGAGGCTATATGACGCCTGCCATGACATATAG
- Protein Sequence
- MESKNIESESKESKSKKSKSRERKSKEKKLSSSMRRRRNLQILFNNTSIIPFKWRGKYMCFFCSKDVNDYAELRAHTKAHGNCSIKDHCLKVLKGGKHMEIKLDISLINCEICDVTLNSIDEIITHLFEEHELEYDKEVKMSIEEYKLADLSCTGCTEKFTYFGYLVSHVNKEHPKNCIICENCNQKFNKMRDLFSHIKNYHREGGYKCEMCPQVFSSLNILRKHRNNRHLTRCNICDLKLPSAALRQKHLELEHPDDGSLQCDACLKEFHTKQGLRMHSRKCKGEELFGIAFKEEHVAMDTDLNYEDRSNRPCVKQIRQNIVTIINMSTAIPFSFFKNKFNCFYCSKDFVDSELLREHSASEHPVCDLKAKCIRKCRESVACVKVDVSRLECKLCYETMTDLEHLIDHLIDTHNANYDKSITSCLQPYKLVKDKMACPVCHDAVFTFFGTLLKHMNTEHTNNNIICVYCGQSFRRDQNLRVHIWRHHRAGRFKCNVCAAECQIPSRLYMHMATAHGVKAAKCPKCPETFSTQYERQKHLIDAHNTGHKCSYCGKLFTRMSFMSNHIRRTHMKEKTYECYVCYTRFFNTVLLKKHMLKHSGQKKYACDVCGERFYWRKTMKTHRDRLHAKQLYPPPPPPPFIPTIPPAVPRREGVIKRLYDACHDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906432;
- 90% Identity
- iTF_01119649;
- 80% Identity
- -