Ogra016191.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387266.1:56866711-56884491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.8 3.6e+02 2.7 5.1 1 23 246 269 246 269 0.93 2 17 2.8 2.7e+02 3.1 0.4 2 23 295 319 294 319 0.90 3 17 2.2 2.1e+02 3.4 0.1 3 22 397 416 395 418 0.87 4 17 1.1 1.1e+02 4.4 0.4 6 23 443 461 439 461 0.93 5 17 0.0011 0.11 13.8 1.0 2 23 467 489 466 489 0.95 6 17 0.0013 0.13 13.6 0.8 1 23 494 517 494 517 0.96 7 17 0.28 27 6.3 0.1 2 23 520 542 519 542 0.93 8 17 0.97 92 4.6 1.0 2 21 549 568 548 569 0.91 9 17 0.0025 0.24 12.7 0.5 1 23 628 651 628 651 0.92 10 17 0.16 15 7.1 0.2 2 23 679 701 678 701 0.91 11 17 0.059 5.6 8.4 0.1 3 23 725 747 724 747 0.95 12 17 0.00055 0.053 14.8 0.6 3 20 754 771 752 775 0.90 13 17 1.3 1.2e+02 4.2 0.3 1 23 780 803 780 803 0.95 14 17 0.00013 0.012 16.8 0.4 2 23 809 831 809 831 0.92 15 17 0.00041 0.039 15.2 4.6 1 23 835 858 835 858 0.97 16 17 0.0015 0.14 13.4 2.4 1 23 864 886 864 886 0.98 17 17 0.086 8.2 7.9 0.7 1 23 892 915 892 915 0.93
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATTGTGGTGAAGGAGAGCCCCGGCTTATGCCGGTGCTGTCTCTCCGAAGGATGTTACAAGGATTTAGGATCGGAGTATACCTGGATGAATGAAACCGAGGTGTATGCTGATATGCTGCTTGAATGCTTCGATATTAGCATAACCCAGCATAATGAAGGCCCAAATGGTCCAAACCGGCTCATCTGTGAGGTCTGCATTACCCGGCTGCGGGATGCTTGCAATTTCAAGAAACAGGTCATGGACTCAGAGAAGAAATTCATTGATATGGTTGGCAGGGGTGAATTTAGGCCTAAGATGCTAATCTACCAGACGCAGATGAAATGTGAAGATCCAAATGCTGTGGTGAACCCTGTAGAAGATGCAGACATTGAATACCTTGATGACGAAATTGATTTTGGTGATGATGACCTAAAAGACGAATTATCACAGCCTTCAGTGTCAGAACTACCGGTAGCAGTAGCCACACTGCCTGTTAAGGGGAAACGCGGCCGTCCCCGCAAGAACACACCAGTGAAGCCGGACAAGAGGGCGAAAGTCGCCAAACTCGACGACAAAGCCAAGACTTCAAAAACTGTTGCTAAAGGTGAGAAACGGCGCATCACAGAGGCGTCGAGTAAGTCCTCAATGACGTCGACAAAACGCAACAAACTTATGAAGAGTAACGCTATCACAGTCCTTGAGACATCAACCGTGATCCCCTTCAAATGGCACAGACAGAACTACCTGTGTTTCTTCTGCCATCTCACCTTCAAAAACATTGACATACTCAAAGAACACACTAGACATCAGCATAAGAAATCTAATATGAAAGCTGCTGTCTCATACTTGAGAAGAGACGAAAAAGTCAAAATTGACGTCTCTGTACTGCAATGTCGATCTTGCAATGATACTCGTAAATTCGACGATCTCAACTCCCTCATAGAACACTTGAAAGGCACACACAACATTAAATTCACAGAAGAATGTGGCTACGGTCTCATTCCGTACTTTCTACAAAACGATGTCTACCATTGCGCAGTTTGTAAAgaagagtttcaCAAAGATGTCGCCGACTATGCAGAGTTGAGAACTCATACGAAAGCACATGGCAACTGTTCCATAAATGACCATTGCCTTAAAGTCCTCAAAGGAGGAAAGCATATGGAAATTAAACTGGACATTTCACTTATAAATTGTGAAATCTGCGACGTAACATTGAACTCATTCGATGAAATCATCACTCATTTGTTTGACGAACACGAACTTGAATACGATAAAGAAGTAGAAATGTCCATAGAAAAATATAAGCTTGCTGATCTCAGTTGCATAAGTTGCACAGAAAAGTTTACGTACTTTGGCTATCTAGTCTCCCATGTCAATAAAGAACATCCGAAGAACTGCCTCATTTGCGAAAACTGCCCTCAAAAATTCAACAAATTGAGAGATCTATTTTCTCACATGAAGAACTATCACCGAGAAGGAGGGTACCAATGCGAAATGTGCCCTCAAGTCTTCAGCTCATTGAATATTCTAAGAAAACATCGAAATAACAGGCATTTGACTCGATGTAACATTTGCGATTTGAAACTACCGTCAGCTGCTTTGAGACAAAAACACCTCGAGTTAGAACATCCGGACGACGGGTCTCTGCAGTGTGATGCTTGTTTGAAAGAGTTCCACACGAAACAAGGGCTTAGAATGCATTCAAAAAAATGTAAAGGGGAAGAGCTATTTGGAATCGCATTCAAAGAAGAACACGTTGCCATGGACACAGACCTAAATTACGAGGATCGTTCCAACAGACCCTGCGTCAAACAAATCAGACAAAATATAGTAACAATCATAAACATGTCTACGGCAATACCTTTCAGTTTCTACAAGAATAAGTTCAACTGCTTTTACTGCTCGAAAGATTTTGTTGATTCGGAATTGTTGAGGGAACACTCGGCTTCAGAGCACCCTGTTTGCGATGTCAAAGCAAAATGTATTAGGAAGTGTAGGGAGTCCGTCGTTTGCGTCAAAATCGATGTTTCAAGACTCGAATGCAAAGTTTGCTACGAGACAATGACTGATTTGGATCATCTGATCGATCACTTAATAGATACACACAATGCGAATTACGATAAATCGATAACGTCGTGTCTTCAACCTTATAAGCTTGTTAAAGACAAAATGGCCTGTCCAGTCTGTCCCGACGCAGTATTCACCTTCTTCGGAACACTTCTAAAACACATGAATACCGAACATACAAACAACAATATAATTTGCGTTTACTGCGGCCAATCGTTCCGTAGGGATCAAAACTTACGCGTTCACATTTGGCGTCATCACAGAGCTGGGAGGTTTAAATGTAATGTCTGTGCTGCAGAATGCCAAATACCGTCTCGCTTATACATGCACATGGCTACAGCACACGGCGTCAAAGCCGCTAAATGTCCGAAATGCCCCGAGTCGTTCTCCACGCAATATGAGAGACAAAAACATTTGATCGATGCCCACAATACTGGCCACAAATGTTCTTACTGTGGAAAGCTGTTTACAAGAATGTCTTTCATGAGTAATCATATAAGAAGGACGCATATGAAAGAGAAGACTTATGAATGTTATGTTTGCTATACGAGGTTCTTTAACACTGTGCTGTTGAAGAAGCATATGTTGAAGCATAGTGGACAGAAGAAATATGCGTGCGATGTGTGCGGAGAACGGTTCTACTGGCGAAAGACTATGAAGACTCATAGGGATAGACTGCATGCTAAACAAGTTTATCCTCCGCCTCCACCCCCTCCGTTTATACCAACTATCCCTCCAGCTGCTCCCCGACGCGAAGGGGTGATCAAAAGACTATATGACGCCTGCCATGACATATAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMVGRGEFRPKMLIYQTQMKCEDPNAVVNPVEDADIEYLDDEIDFGDDDLKDELSQPSVSELPVAVATLPVKGKRGRPRKNTPVKPDKRAKVAKLDDKAKTSKTVAKGEKRRITEASSKSSMTSTKRNKLMKSNAITVLETSTVIPFKWHRQNYLCFFCHLTFKNIDILKEHTRHQHKKSNMKAAVSYLRRDEKVKIDVSVLQCRSCNDTRKFDDLNSLIEHLKGTHNIKFTEECGYGLIPYFLQNDVYHCAVCKEEFHKDVADYAELRTHTKAHGNCSINDHCLKVLKGGKHMEIKLDISLINCEICDVTLNSFDEIITHLFDEHELEYDKEVEMSIEKYKLADLSCISCTEKFTYFGYLVSHVNKEHPKNCLICENCPQKFNKLRDLFSHMKNYHREGGYQCEMCPQVFSSLNILRKHRNNRHLTRCNICDLKLPSAALRQKHLELEHPDDGSLQCDACLKEFHTKQGLRMHSKKCKGEELFGIAFKEEHVAMDTDLNYEDRSNRPCVKQIRQNIVTIINMSTAIPFSFYKNKFNCFYCSKDFVDSELLREHSASEHPVCDVKAKCIRKCRESVVCVKIDVSRLECKVCYETMTDLDHLIDHLIDTHNANYDKSITSCLQPYKLVKDKMACPVCPDAVFTFFGTLLKHMNTEHTNNNIICVYCGQSFRRDQNLRVHIWRHHRAGRFKCNVCAAECQIPSRLYMHMATAHGVKAAKCPKCPESFSTQYERQKHLIDAHNTGHKCSYCGKLFTRMSFMSNHIRRTHMKEKTYECYVCYTRFFNTVLLKKHMLKHSGQKKYACDVCGERFYWRKTMKTHRDRLHAKQVYPPPPPPPFIPTIPPAAPRREGVIKRLYDACHDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00974066;
- 90% Identity
- -
- 80% Identity
- -