Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376673.1:7344994-7358033[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.01 0.78 10.8 3.8 1 23 242 265 242 265 0.94

2 18 2.3 1.7e+02 3.4 0.2 2 23 291 313 290 313 0.93

3 18 0.42 32 5.7 0.9 1 23 377 399 377 399 0.95

4 18 2.2 1.7e+02 3.4 0.1 2 22 428 448 427 450 0.88

5 18 0.0028 0.21 12.5 0.4 2 23 471 493 470 493 0.95

6 18 0.041 3.1 8.9 2.4 2 23 499 521 498 521 0.93

7 18 0.0011 0.086 13.8 1.1 1 23 526 549 526 549 0.96

8 18 0.14 11 7.2 0.2 2 23 552 574 551 574 0.94

9 18 0.37 28 5.9 1.0 2 22 581 601 580 601 0.95

10 18 0.0034 0.25 12.3 0.2 1 23 660 683 660 683 0.90

11 18 0.17 13 6.9 0.0 3 23 712 733 710 733 0.91

12 18 1.2 89 4.3 0.1 3 23 757 779 756 779 0.91

13 18 0.00063 0.048 14.6 0.6 3 20 786 803 784 807 0.90

14 18 0.93 70 4.6 0.3 1 23 812 835 812 835 0.93

15 18 0.00038 0.029 15.3 0.8 2 23 841 863 841 863 0.94

16 18 5.5e-05 0.0042 17.9 4.4 1 23 867 890 867 890 0.97

17 18 0.0025 0.19 12.7 1.5 1 23 896 918 896 918 0.98

18 18 0.1 7.8 7.6 0.9 1 23 924 947 924 947 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.01	0.78	10.8	3.8	1	23	242	265	242	265	0.94
2	18	2.3	1.7e+02	3.4	0.2	2	23	291	313	290	313	0.93
3	18	0.42	32	5.7	0.9	1	23	377	399	377	399	0.95
4	18	2.2	1.7e+02	3.4	0.1	2	22	428	448	427	450	0.88
5	18	0.0028	0.21	12.5	0.4	2	23	471	493	470	493	0.95
6	18	0.041	3.1	8.9	2.4	2	23	499	521	498	521	0.93
7	18	0.0011	0.086	13.8	1.1	1	23	526	549	526	549	0.96
8	18	0.14	11	7.2	0.2	2	23	552	574	551	574	0.94
9	18	0.37	28	5.9	1.0	2	22	581	601	580	601	0.95
10	18	0.0034	0.25	12.3	0.2	1	23	660	683	660	683	0.90
11	18	0.17	13	6.9	0.0	3	23	712	733	710	733	0.91
12	18	1.2	89	4.3	0.1	3	23	757	779	756	779	0.91
13	18	0.00063	0.048	14.6	0.6	3	20	786	803	784	807	0.90
14	18	0.93	70	4.6	0.3	1	23	812	835	812	835	0.93
15	18	0.00038	0.029	15.3	0.8	2	23	841	863	841	863	0.94
16	18	5.5e-05	0.0042	17.9	4.4	1	23	867	890	867	890	0.97
17	18	0.0025	0.19	12.7	1.5	1	23	896	918	896	918	0.98
18	18	0.1	7.8	7.6	0.9	1	23	924	947	924	947	0.93

Sequence Information

Coding Sequence: ATGATGGAGTTTGACGAAATTGTTGTGAAGGAGAGCCCCGGGCTGTGCCGGTGCTGTCTCTCCGAAGGATGTTACAAGGATTTGGGGACGGAGTATACTTGGATGAATGAAACCGAAGTTTATGCTGATATTTTGCTTGAATGCTTCGATATTAGCATAACCCAGCACAATGAAGGTCCAAATGGTCCAAACCGTCTCATCTGTGAAGTCTGCATCACTCGGTTGCGGGATGCTTGCAACTTCAAGAAGCAAGTCATGGACTCGGAGAAGAAATTCATTGACATGATGGGCAGGGGAGAATTTAGGCCTAAGATGCTAATCTACCAGACACATATGAAGTGTGAAGATCTGACTGCAGTGGAGGACCCTGTGGAAGATGCAGACATTGAGTATCTGGAAGATGAAATAGATTTTGGTGATGATGATCTAAAAGACGATCTAACACAGCCGTCAGTGTCAGAAGTAGCTTTACCTGTCAAGGGCAAACGCGGCCGTCCCCGCAAGAACACACCAGTGAAGCCAGAGAAGAGGGCCAAGGTCGCCAAGCTCGACGATAAAGCCAAGACTTCAAAAGCTGTCGCTAAAGGTGAGAAACGGCGCAACACAGAGGCGTCGAGTAAGTCCTCAATGACGTCAACAAAACGCAACAGACTCATGAAGACTAACGCTATCATAGTTCTAGAAACTTCTACCGTCATCCCCTTCAAATGGCACAGACAGAACTACCTCTGTTTCTTCTGCCATCTCACTTTCAAAGACACTGATTTACTCAAAGAACACACTAGGAACCAACACAAGAAATCTAATATGAAAGCTGCAGTTTCATACTTAAGAAGGGACGAGAAAGTCAAAATTGACGTCAGTGTACTACAATGTCGGTCTTGCACCGATAAATTTGACGATCTAAACGCCCTTATAGAACATTTAAAAGGCACGCATAGTATACAATTCACAGAAGAATGCGGTTATGGTCTTATTCCGTACTTTTTACAGAACGATGTCTACAATTGCGCAGTTTATAAAAAAACGAGGAAATGGAAGAAAGAATCTTCGTCGATGAGGAGGCGACGGAACCTCCAAATTATATTCAACAACACATCTATAATTCCTTTTAAATGGCGCGGGAAGTACTTGTGTTTCTATTGCAGCAAAGATATTGTCGAGTATAAAGAGTTGAGGAATCATACGAAAGAACACGGCAACTGTTCCATATATGACCATTCCCTTAAAACCTTAAAAGGAGGGAAGAACATGGAAATTAAAATAGACATTTCAGTTATTACTTGTGAAGTTTGTACTGAAACGTTACCGTCCCTCGATGAAATCATCACTCATTTGTTTGATAAACATGAACTGAAGTACGATAAAGAAATAGAAATGGCTACAGAAGAATATAAGCTGGCTGATCTCAGCTGCACAGGATGCACCGAAACGTTCACGTATTTTGGCTACCTAGTCTCTCACGTCAATAAGGAACATCCCAAGAACTGCCTCGTCTGCGAAAAATGCAACCAGAAATTCAACAAAACGAGAGATCTGTTCTCTCACAATAAAAACTATCACCGAGAAGGGGGGTATCAATGTGAAATGTGCCCCCAGAGCTTCAGCTCATTAAATATTTTAAGAAAACACAGAAATAACAGGCATCTGACTCGATGCAACATTTGCGATTTAAAACTACCATCAGCTGCGTTGAGACAAAAGCACCTTCAATTAGAACACCCGGACGATGGGTCCCTGCAATGCGATAACTGCTTGAAAGAGCTCCACACGAAACAAGGCTTGAAAATGCATTTAAGGAAGTGTAAAGGAGAAGACATTTTCGGAGTCGCAATAAAAGACGAAAACGTTGCCATGGACTTGGACCAAAACTACGAGGATCGTTCGAGCAAACCATGCGTTAAACAAATCCGTCAAAACGTAGTCACCGTCATAAACATGTCTACGGCAATACCTTTTAATTTTTTCAAGAACAGGTTCAACTGCTTTTACTGTTCCAAAGACTTCATCGATTCAGAAATGTTGAGGGAACACGCGGCTTTAGAGCACCCCTTTTGCGATGTCAAATCGAAATGTATCAAAAAGTGTAGGGAGTCCGTCGCTTGCGTCAAAGTCGATGTTTCAAGACTCGCTTGCAAAGTCTGCTACGAAACATTGGCCGATTTGGATCAATTAATAGATCACTTAATTGACAAACACAATGCAAATTACGACAAATCCATAACAACGTGTCTACAACCTTATAAATTGGTAAAAGACAACATGGCCTGTCCACTTTGTACAGGAGTAGTATTCAGGTTCTTCGGTACGCTTCTAAAACACGTGAACACGGAACATACGAACAATCATATAATTTGCGTTTACTGCGGTCAAACATTCCGCAGGGATCAAAACTTACGAGTCCATATTTGGCGACATCATAGACCTGGGAGGTTTAAATGTACCATCTGTGCTGCGGAATGCAACATACCGTCTCGCTTGTACATGCACATGGCTCAAGCACACGGTGTCAAAGCTGCTAAGTGTCAGAAATGCCCCGAGACTTTCTCCACTCAATACGAGAGGCAGAAACATTTGATCCTCGCTCACAATACTGGCCACAAATGTTCTTACTGCGGGAAGCTTTTTACAAGGATGTCCTTCTTGAGCAACCATATAAGGAGGACGCATATGAAAGAGAAGACTTACGAATGTTATGTTTGCTATGCGAGGTTCTTTAACACTGTGCTTTTGAAGAAGCATATGTTGAAGCACAGTGGTCAGAAGAAGTATGCTTGTGATGTGTGTGGGGAGCGTTTCTACTGGCGAAAGACTATGAAGACGCATAGAGATAAGTCACATGCTAGGCAGCTGTACCCACCCCCGCCTCCCCCTCCGGTCATACCAACTATACCCAGACGCGAAGGGGTGATAAAGAGAGTATATGACGTCTGTCACGACATCTAG
Protein Sequence: MMEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNETEVYADILLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYQTHMKCEDLTAVEDPVEDADIEYLEDEIDFGDDDLKDDLTQPSVSEVALPVKGKRGRPRKNTPVKPEKRAKVAKLDDKAKTSKAVAKGEKRRNTEASSKSSMTSTKRNRLMKTNAIIVLETSTVIPFKWHRQNYLCFFCHLTFKDTDLLKEHTRNQHKKSNMKAAVSYLRRDEKVKIDVSVLQCRSCTDKFDDLNALIEHLKGTHSIQFTEECGYGLIPYFLQNDVYNCAVYKKTRKWKKESSSMRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDIVEYKELRNHTKEHGNCSIYDHSLKTLKGGKNMEIKIDISVITCEVCTETLPSLDEIITHLFDKHELKYDKEIEMATEEYKLADLSCTGCTETFTYFGYLVSHVNKEHPKNCLVCEKCNQKFNKTRDLFSHNKNYHREGGYQCEMCPQSFSSLNILRKHRNNRHLTRCNICDLKLPSAALRQKHLQLEHPDDGSLQCDNCLKELHTKQGLKMHLRKCKGEDIFGVAIKDENVAMDLDQNYEDRSSKPCVKQIRQNVVTVINMSTAIPFNFFKNRFNCFYCSKDFIDSEMLREHAALEHPFCDVKSKCIKKCRESVACVKVDVSRLACKVCYETLADLDQLIDHLIDKHNANYDKSITTCLQPYKLVKDNMACPLCTGVVFRFFGTLLKHVNTEHTNNHIICVYCGQTFRRDQNLRVHIWRHHRPGRFKCTICAAECNIPSRLYMHMAQAHGVKAAKCQKCPETFSTQYERQKHLILAHNTGHKCSYCGKLFTRMSFLSNHIRRTHMKEKTYECYVCYARFFNTVLLKKHMLKHSGQKKYACDVCGERFYWRKTMKTHRDKSHARQLYPPPPPPPVIPTIPRREGVIKRVYDVCHDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00952995; iTF_01118719;
90% Identity: -
80% Identity: -