Ogra000381.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthosia gracilis
Gene Symbol
clz9
Assembly
GCA_947562075.1
Location
OX387264.1:5542178-5544775[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.7e-10 4.3e-07 30.3 0.0 1 42 14 55 14 57 0.87

Sequence Information

Coding Sequence
ATGCCTAATAAATACGTAAAAAAGAAAATACCCCAGTACACACAAGAAGATATAACCAATgcagttcgagaagttaaaaacgatgggttgtcaatgtacgctgcagcgcaaaaatacggaataccctcaacgactctttatgacaagataaaagaaacttatagcacgaatgttgtaggtaggcggttagctattccatgggaagcagaaagtcgtttggccgatgcaattcaaactatggaaaagtgggggtttggcctttcaagggaagaagttttaaatctagttgcggagttcgtaaaaacaaataacttggttaccccatttaggaacaacaaacctggaaaagactggtttattaattttagaaaaagacacagactttctattaaaaaaccacagccagttgaatacgtaagaaaaaaaatgactgatccatttgtaatttctgaatacttcaaactactgcaggatacattgactgctttaaacctatttcaaagtccacatttaatttggaatatggatgaaacatctttgtctctcgacccaactaagacaaaagttgttggcgctattaataaaccatgttccagaacaacttttggaactggaaaagaaaatatcaccgtattgacaactgtaagtgcagctggcaaaaagttatcacctttaatagtatttaaaggaaagaacgtctgggaccaatggatggccacaaccgaaaattacgattttgagctgtcatatgcagctagctccaaaggctggatggagacagacattttttacaactacatggcaaagattttaattccagctttaggtgaaaaacgtcctgcattaataatttacgatgggcattctacacatgtagatacgaaagtcatagagttggccatcaaaaataatgttacgattcttaagctgccgcctcacacttctcacttgttacaaccccttgatgttgcggtttttaaatcatttaaaaccaaatgggacaataaattagtcgaatggcagcgccataatattggtataaagatgcctaaaaaagtttttgctcaaacttttgcagaaacgtggcaagaaacggacccggatgtgattaaaagtggatttaaaaaatctggcattcacccattTGATTCTCAAGTGATACCAGAAGATAAATACGATCCAGCTGCTTACAGAAGATATATAAATGAAAAAAGTACTGAATATTCTCATCCACAGGTGCAGTTAAGTCCCAAAACCCCAAAGTCGTTGAAAAAACTGTGCGTTGATTTTCTTAATAAAGAATTTCAAATTGCTGGAGAATTGCGCATTCTTGACCAAGAAACTACTGCAAAAAATGTAATATTCTTGACAGCTTTATCAAAAACAGATAAACAAACTCAACCTTTTGTAGCAAAATCGACTTCGACGTTGCCAGAATGCCTGCAAAGCAATCATTCTCAACCCAAAGAAAAGAAACCACCTAAAATAAATATAATCTCAGATATAAAAATAAATTTTGAAGAACTTTTGCTGGAAAAAATACGCCAGGATAAAAAAGACAATACTTCTGTAAAAAAAAAACGAGTGGCAAAAGGTGCAGAAGTGATTACTGCGTCCATTAATAAAACACATGTTGAAGAAAAGGAAAAACAAGTTACTACTGAATGCGTATCATTGTCTCGAGAAGCAAAGACGCGGCATTCAAAGGATAAAAGAAAATTAAAGAGCCATATTGCAAAACCAGGTCCATCAGGCATAATAAAGGCTAAAACCAAAAAACTAACTAAAAAGAAATCTAAACGACAAAATTCAAGTAGTTCTTCAACTGGTATCTCAGATATAATTAGTGTATACAGTGAAATAGAGTATGATTGTCATGAAGATGAAAGATCAACAGAGGAATTCTGTGACGAAAAGTATTTTGATATACGAATGGAACAAGAACCCAAATCACAAGATATAGAATGCAAAAATTCTAGTAAACAAGAAATAATGTTTAATATATTGGATCAAAGAAAAATATTGAGTGAAGAAGATTTGAATACCCCAAATAAAAAAAAAGGTAAAGGCAAAGGCAAAAGAACGAAGACAGGAAAAGAAAATGACAAAGTTCTTAGAAATAATGATGAGACTCAAAACAATTACAAAAATAAAAATAGTGACAAGACTGAAGAAGAAAAAGAGACGACCGATTACAATACTGAAAACGGTAACAAGACTGATGAAGAAAAAACAACCAAAGACAAAAAACTAACTCTAAATACGGATGAGGACGAAATAGAAGGAGAAATTTATGAAAAAAAGGAACCATACAAGTTGAATGATGCAGTACTTGTGAGGTACTTTAGCAGAAAGAAATGGACCTACTATATTGGGTTCATTGAGAATATATTTGAAAAAAACTACGAGACTTATTACACCGTTGATTTCCTAAGGACAATTAAAAGACCACATCTTACATTTGTTCAACCAAAAAAAAAAGATCGTGACGAAATAACGGAACTGTTAATCATAAAGAAAGTAGAATTAGAAAGAAGCAATGAGAATGATAGGGAATTTTATTTGTTGGATGAAAGTAACAAAATATATTTTGAATAA
Protein Sequence
MPNKYVKKKIPQYTQEDITNAVREVKNDGLSMYAAAQKYGIPSTTLYDKIKETYSTNVVGRRLAIPWEAESRLADAIQTMEKWGFGLSREEVLNLVAEFVKTNNLVTPFRNNKPGKDWFINFRKRHRLSIKKPQPVEYVRKKMTDPFVISEYFKLLQDTLTALNLFQSPHLIWNMDETSLSLDPTKTKVVGAINKPCSRTTFGTGKENITVLTTVSAAGKKLSPLIVFKGKNVWDQWMATTENYDFELSYAASSKGWMETDIFYNYMAKILIPALGEKRPALIIYDGHSTHVDTKVIELAIKNNVTILKLPPHTSHLLQPLDVAVFKSFKTKWDNKLVEWQRHNIGIKMPKKVFAQTFAETWQETDPDVIKSGFKKSGIHPFDSQVIPEDKYDPAAYRRYINEKSTEYSHPQVQLSPKTPKSLKKLCVDFLNKEFQIAGELRILDQETTAKNVIFLTALSKTDKQTQPFVAKSTSTLPECLQSNHSQPKEKKPPKINIISDIKINFEELLLEKIRQDKKDNTSVKKKRVAKGAEVITASINKTHVEEKEKQVTTECVSLSREAKTRHSKDKRKLKSHIAKPGPSGIIKAKTKKLTKKKSKRQNSSSSSTGISDIISVYSEIEYDCHEDERSTEEFCDEKYFDIRMEQEPKSQDIECKNSSKQEIMFNILDQRKILSEEDLNTPNKKKGKGKGKRTKTGKENDKVLRNNDETQNNYKNKNSDKTEEEKETTDYNTENGNKTDEEKTTKDKKLTLNTDEDEIEGEIYEKKEPYKLNDAVLVRYFSRKKWTYYIGFIENIFEKNYETYYTVDFLRTIKRPHLTFVQPKKKDRDEITELLIIKKVELERSNENDREFYLLDESNKIYFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00888188;
90% Identity
iTF_01118222;
80% Identity
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