Lcom020768.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- clz9
- Assembly
- GCA_958295575.1
- Location
- OY282475.1:1695949-1698534[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-10 5.6e-07 30.3 0.0 1 42 14 55 14 57 0.87
Sequence Information
- Coding Sequence
- atgcctaataaatacgtaaaaaagaaaatacccaAGTACACACAAGAAGACATAACCAATGCAGTTCGAGAAGTTAAAAACGATGGGTTGTCAATGTACGCTGCAGCGCAAAAATACGGGATACCCTCAACAACTCTTTATGACAAAATCAAAGAAACATATAGCACGAATGTTGTAGGTAGGCGGTTGGCTATTCCATGGGAAGCAGAAATTCGATTGGCCGATGCAATTAAAACTATGGAAAAGTGGGGGTTTGGCCTCTCAAGGGAAGAAGTATTAAATCTAGTTGCAGAGTTCGTAAAAGCAAATAACTTGGAAACCCCATTTAGGAACAATAAACCCGGCAAAGACtggtttattaattttagaaaaaggCACAGactttctattaaaaaaccacAGCCAGTTGAATacgtaagaaaaaaaatgactgaCCCATTTGTAATCTCTGAATACTTCAAACTATTGCGGGATACACTGACTGCTTTAAATCTATTTCAAAGTCCACATTTGATTTGGAATATGGATGAAACATCTTTGTCTCTCGACCCAACTAAGACAAAAGTTGTTGGCGCTATTAACAAACCATGTTCCAGAACAACCTTTGGAACTGGAAAAGAGAATATCACCGTACTGACAACAGTAAGTGCATCTGGCAAAAAGTTATCACCTTTAATAGTATTTAAAGGAAAGTACGTCTGGGACCAATGGATGGCTACAACCGAGAATTACGATTTTGAGCTGTCATATGCAGCTAGCTCCAAAGGCTGGATGGAGACTGACATTTTTTACAACTACATGGCAAAGAGTTTAATTCCAGCTTTAGGTGAAGAACGTCCTGTACTAATAATTTACGATGGACATTCCACGCACGTAGATACAAAAGTCATAGAGTTGGCAGTAAAAAACGATGTTACAATTATTAAGCTGCCGCCTCACACATCTCACTTGTTACAACCCCTCGATGTTGCggtttttaaatcatttaagaCCAAATGGGATTGTAAATTAGTTGAATGGCAGCGCCACAATGTTGGCATAAAGATGCCTAAAAAAGTTTTTGCTCAAACTTTCGCAGAAACGTGGCAAGAAACGGATCCAGATGTGATTAAAAGTGGATTTAAAAAATCTGGCATTCACCCATTTGATCCTCAAATAATACCTGAAGACAAATACGATCCCGCTGCTTACAGAagatatatagataaaaaaaaatcagaatgtTCTCTTCCACAGGTGCAGTTAAGTCCCAAAACCCCAAAGTCACTGAACAAACTGtgcgttgatttttttaacaaagaatTTCAAATTGCTGGTGAATTGCATATTCTTGATCAAGAAACTACTGAAAAaggtgtaatattttttaatacattatcAAAATCAGATAAACAAAATCAAGCTTTTGTAGCAAAATCGACTTCGACGTTACCAGAATGCCTGCAAAGCAATCATTCTCAACTCAAAGAAAATAAAccatctaaaataaatataatctcagatataaaaataaactttgaagAACTTTTGCTAGAAAAAATACGCCAGGATAAAAAAGACAATACTTgtgtaagaaaaaaaagagtGGCAAAAGGTGCGGAAGTGATTACTGCATCTAAAAGAGATGTTGAAAAAAAGGAAAACCAAGTAACTACTCAATGTTTATTATCTCAAGAAGTGAAGACACGGGATTTGAAGGGTAAAAGAAAGTTGAAGAGCTCTATTACAAAGTCAGGTCCGTCGGACATAAAAAAagcgaaaaacaaaaaacaaagcaaaaaaaaatcaaaacgacAAGATTCAACCAGCTCTTCAACCAATATCTCAGATGTTATTAGTGTTTACAGCGAAATAGAGTATGATAATCGTGAAGATGAAAGATTTACAGACGAATTCTGGgacgaaaattattttgatatacgaATAGATGAAGAACTCAAATTACAAGATATAGAATGCGATAATTTTAGTAAACAGGAAATAATGTTTAATATATCggatcaaagaaaaatattgggTGAAGAAAATTTCAACACCCTACATGACAAAAAAACCAAAGGTAAAGgcaaaggcaaaaaaacgaaGACAGGAAAAGAAAATTACAAAGTTCTCAGAAATAATGACGAcactcaaaataataaaaaaaccgaaaATTGTGACAAGACTGATGAAGAAAAAGAGACGAACAATAGTAATACTGAAAACAGTAACAAAACTAAAGAAGAAGAAACGACCgtagacaaaaaaataactctAAATACGGATAAAGACGCAATAGAAGAagaaattgatgaaaaaaaggAACCATACAAGTTAAATGATGCAGTGCTAGTGAGGTACTTTAGCAGAAAGAAATGGACCTACTATATTGGCTTCATTGagaatatgtttaaaaaaaattacgagaCTTATTACAACGTTGATTTCCTAAGGACAATTAAAAGACCACATCTTACATTTgtccaaccaaaaaaaaaagatcgtgACGAAATAACGGAACTATTAATCATAAAGAAAGTAGAATTAGAAAGAAATGATagagaattttatttgttagatgaaagtaacaaaatatattttgaataa
- Protein Sequence
- MPNKYVKKKIPKYTQEDITNAVREVKNDGLSMYAAAQKYGIPSTTLYDKIKETYSTNVVGRRLAIPWEAEIRLADAIKTMEKWGFGLSREEVLNLVAEFVKANNLETPFRNNKPGKDWFINFRKRHRLSIKKPQPVEYVRKKMTDPFVISEYFKLLRDTLTALNLFQSPHLIWNMDETSLSLDPTKTKVVGAINKPCSRTTFGTGKENITVLTTVSASGKKLSPLIVFKGKYVWDQWMATTENYDFELSYAASSKGWMETDIFYNYMAKSLIPALGEERPVLIIYDGHSTHVDTKVIELAVKNDVTIIKLPPHTSHLLQPLDVAVFKSFKTKWDCKLVEWQRHNVGIKMPKKVFAQTFAETWQETDPDVIKSGFKKSGIHPFDPQIIPEDKYDPAAYRRYIDKKKSECSLPQVQLSPKTPKSLNKLCVDFFNKEFQIAGELHILDQETTEKGVIFFNTLSKSDKQNQAFVAKSTSTLPECLQSNHSQLKENKPSKINIISDIKINFEELLLEKIRQDKKDNTCVRKKRVAKGAEVITASKRDVEKKENQVTTQCLLSQEVKTRDLKGKRKLKSSITKSGPSDIKKAKNKKQSKKKSKRQDSTSSSTNISDVISVYSEIEYDNREDERFTDEFWDENYFDIRIDEELKLQDIECDNFSKQEIMFNISDQRKILGEENFNTLHDKKTKGKGKGKKTKTGKENYKVLRNNDDTQNNKKTENCDKTDEEKETNNSNTENSNKTKEEETTVDKKITLNTDKDAIEEEIDEKKEPYKLNDAVLVRYFSRKKWTYYIGFIENMFKKNYETYYNVDFLRTIKRPHLTFVQPKKKDRDEITELLIIKKVELERNDREFYLLDESNKIYFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118221; iTF_01118220; iTF_01118222;
- 90% Identity
- -
- 80% Identity
- -