Ogot044377.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- RTase_1
- Assembly
- GCA_949775005.1
- Location
- OX459050.1:22172456-22189288[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.47 7.4e+03 -2.0 0.1 43 91 53 102 39 105 0.79 2 5 9.3e-68 1.5e-63 217.0 10.5 1 222 122 344 122 346 0.93 3 5 0.061 9.5e+02 0.9 0.1 199 222 377 400 366 402 0.88 4 5 8.9e-17 1.4e-12 49.6 0.3 199 286 433 517 421 529 0.77 5 5 0.88 1.4e+04 -2.9 0.2 222 250 781 809 780 829 0.79
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAAAGCGGGGATGCCTTCACTGATGGAGATTTCGGTGATTCTGATGAGGAAACCATCGTCGAACGCCTTGATGAAGCTAAGCCTGCTCACATACCCGTCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCTGCTACTAATGGTCACACTAATGGTAGTGTAGAAGAACTGCCCATTATGAATGGGCGTAAAAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTAACGGATTTGCGCCGAGATTCCCATGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGAAGAGCGGCGCGGGCAGAGGCGCGAGAGATACGCATGCGCGAGCTTGAGAGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCTTATGATATGTATGCTGGCAAGACACCAGAGACGGTGGGCCGTCGCGGCGCCACGAGGCTGACGGCGCTCAGCCCAGCCGTGCACTCTCCGAGACGGAGCTCGGAGGATTCCGTCGATGATGGCTTCAGCATCAAGGATCTTAGGCATGAGCTGAAGGAGGTGGAGGAGAAGTTTCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAAGAGTATGCGCAGTTGCAGCGCGAACACAGAGAAAAATGCTCATCATTCGAGCGTCTAAAACGCGAGCACGAGTCTGTAACTCGCGAGCTGAGCGCGGCACGAGACGCGGTACGGGCGCGAGACGCGGCGGCGGCGGGGGCGGGCTTCGCGTTCGTGGACGCGGCGGCGCTGGATGTGGCGGCGCGGGGCTCTGCGGGGGCGCCGGTGGGCGCGGTGCCGGCGCTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCAACGATGCGGGAGAGGGCACGCTAGGCGCAGCAGCTGCTCAACGATGCGGGAGAGGGCACGCTAGGTATGATACAATCTATTATGCGGCGGCGCGGGGCTCTGCGGGGGCGCCGGTGGGCGCGGTGCCGGCGCTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCAACGATGCGGGAGAGGGCACGCTAGGCGCAGCAGCTGCTCAACGATGCGGGATAGGGCACGCTAGGTATGATACAATCTATTATGCGGCGGCGCGGGGCTCTGCGGGGGCGCCGGTGGGCGCGGTGCCGGCGCTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCAACGATGCGGGAGAGGGCACGCTAGACGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAAGCGCTGGAGTCAGAGGTCCGCAAGCTGAAGCTGCAGCTCAACGAGGAGCGCGCCGCCAGGCAGAACGGAGTCGCCAACCATCACGACCAGGACTACGAGAACGAACAAACTTGGCTTAATAATAGTATATGCAATAAAGAACTGTTTGATGGTAGGTACTTGGTCTATAGAAGGGACAGGGAAAGTTCGGGCTTCCACTGGGATAGGGATGGCGGAGGTGTCTTGATTGCAGTATCTAAAAAACTAGTTTCGAAAAGATTATTGAAGAGACAAAGTAATTGTGAGGATCTATGGGTATCTGTAGAAATACCGTGCGAGCGCTCGAGGCAACTCTGCCGTCTTGATCTTTGTGCAGTATACTTGCCACCACCGGTCTCTAAATCAATGTTGGACCATTTTATTGCTAAATGTAATTCGTACCAGGATAAACATAATGCGTACACATGCATCGTGGGCGATTTTAACTTGAGAACTAGAAACTGGAACGACTTAAACAATCCTCTCAAAAATCTGCGCGTTAGTAGTCTCGATCAACTTCTTATTGATTTTACATCAGTTAATAATCTCCGACAgtgcaataatgtaaccaacAAAAACTGTAGACTTCTGGATGTTGTATTGGTGGACGTTCCAGGTTGTTGCGTTAGTGAAGCGGATCCTTTAAGTGTTATAGACCCTCACCATCCTCCATTAAATATACAAGTCACATTGACGGAGTCACTAAAACTTAAATCTAATAGCATTTCAAAAAGAAACTTTCATAAGGCCGACTATGAAGCAATAAACAGGTATTTTAAGGATAAGGACTGGGAAGACTGTCTGGGATGTTGCCAAAATGTTGACGAAATGGTGGAAGTTTTTTACAGCGTTATCGGATCAGCTATCAATGCTTTTGTACCTATCATCCGAAGGCAAAGTAGTAGTGTACCAATATGGTTTGATAAGAAActtcttaatttattaaaagaaaaaaacaaacttcgtATTAAGTATAAAAAGTACAAGAATCCCCTTGACAAGCTATCACTCAGATTAATATCAAAACGATGTGATAATTACGCTAAAAATTGTTACAATAGTTACATTGAGAGTACAGAAGAATCTATAGCCAGATGTCCTAAAATTTTTTGGTCTTATGTCAAGAATAAACGTGGAGGAGAAAGTTCATACCCAGCATCAATGACTAATGGTCCGATAACATCTTCGAATGGAGAAGGAATATGTGAACTATTTGCTTCAAATTATAGCAGCATTTATAAAGAAGAAACAACATCACCTTCAAGTCAAAACTATGTAGCCTCCGAATACTTGGAAGCAATAGGCACACAGTCAGACAGTATAGCTTCAGTGGACATCAAATATGAAAATGTTgaggaaaaactaaaaagccTTGATATTACTAAGGGAGCAGGCCCAGATGATATACCGCCACTATTTATTGCCAAATGTGCACCTAACCTGGCTGTTCCTTTGGCGAAGATATATAACGCCTCAATCCAATCTGGTAAATTCCCTAAAGAGTGGAAACAGGCGAAAGTGGTACCGGTCTACAAGAGTGGAGACCCTTGTGACGTAAATAACTATAGACCAATATCCATCCATTCGATTTTTGGTAAAATATTAGAGTCGTTGATTTGTCCACATATTCAGCGCTATTTTTCCAAGTTCTTAAGCCACCATCAGCACGGCTTTGTAAAGAACAGATCCACGAGTACAAATCTAGTGTCCTTTGTTGAAGCCACATGCGAAGCCATGGATGGGGGAGTACAGGTTGACGCTGTTTATACGGATTTTAGCAAGGCGTTTGATAAGGTTTCACATAAACTGCTTGTTAAAAAACTAGCTACGTACGGCGTCACCGGTAGTCTTCTAAAGTGGTTTAGTTCTTATCTGGCTGGTCGCGAGTTTTATGTGGTTGTCAATGGGTTCAGGTCGGGCGGGTATGCAATTGCCTCGGGTGTCCCTCAAGGTTCTCATCTGGGCCCAGTATTATTCATCATATATATAAATGACGTGATATCCTGCTTTCACAGTACTAGTATATTCCTTTTTGCAGATGActtgaaaatttcaagagccATTAGGTCTCAACAGGATGTAATCCTAATGCAAGAAGATATCGACCGATTACCTGCATGgtgtgataataataaaatctcgTTGAATAGTTCGAAATGTAGCCACATAAAATTCACCAGGAAAATAAATATACTGAATTCGGCGTACCAAATAAATGGAGTGAACTTATGTGAAGTGGATGTTGTACGAGATCTGGGAGTTATCTTGGACTCGAAACTCACATTTGTACCACATATTGAGAACATAATCAGTCGATCCCAACGTATGCTTGGATTTGTCATTCGTAATGGCAAGGTATTTCAACACCCACATACTAAATTAGTTCTCTACAATAGCCTTATAAGAAGCATCCTGGAATACTGCAGTGTAATATGGAGGCCTCACTACGCAACCCACTCGCTGCGGATCGAACGAGTCCAAAAAAGGTTTATCCGATACCTAGGGTACTCAAAGGGAAGGCAATTTAAATATCTCCCCTACCTTGATAAACTAGGCTGCTACAAAATGAGTACCCTGGAAGCTCGAAGGCAGCTCTTGGATTTGCGATTCGCATATAAACTGCTCCATAACACCATTGACTGCCCACAATTGGTATGTAGGCTCAATTTCAGAGTACCCCGTAGACCACCTCGCAAACCCATAACACCTTTAGCTCCACCTCTTCGTCATACAGTGTTTGGTGCTAATTCTCCTATACCCCGCATGTGCAAACTCATAAACGAGCGCAGCGACCTGGTTGACGTCTACGCAGACTCTATATCGAAGTTTGTTAGACGTAATTAG
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDEETIVERLDEAKPAHIPVNEAVKDDIQKSAATNGHTNGSVEELPIMNGRKNSEAHSSDMENQSLVLTDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDVAARGSAGAPVGAVPALALVTHQAQQLLNDAGEGTLGAAAAQRCGRGHARYDTIYYAAARGSAGAPVGAVPALALVTHQAQQLLNDAGEGTLGAAAAQRCGIGHARYDTIYYAAARGSAGAPVGAVPALALVTHQAQQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDQDYENEQTWLNNSICNKELFDGRYLVYRRDRESSGFHWDRDGGGVLIAVSKKLVSKRLLKRQSNCEDLWVSVEIPCERSRQLCRLDLCAVYLPPPVSKSMLDHFIAKCNSYQDKHNAYTCIVGDFNLRTRNWNDLNNPLKNLRVSSLDQLLIDFTSVNNLRQCNNVTNKNCRLLDVVLVDVPGCCVSEADPLSVIDPHHPPLNIQVTLTESLKLKSNSISKRNFHKADYEAINRYFKDKDWEDCLGCCQNVDEMVEVFYSVIGSAINAFVPIIRRQSSSVPIWFDKKLLNLLKEKNKLRIKYKKYKNPLDKLSLRLISKRCDNYAKNCYNSYIESTEESIARCPKIFWSYVKNKRGGESSYPASMTNGPITSSNGEGICELFASNYSSIYKEETTSPSSQNYVASEYLEAIGTQSDSIASVDIKYENVEEKLKSLDITKGAGPDDIPPLFIAKCAPNLAVPLAKIYNASIQSGKFPKEWKQAKVVPVYKSGDPCDVNNYRPISIHSIFGKILESLICPHIQRYFSKFLSHHQHGFVKNRSTSTNLVSFVEATCEAMDGGVQVDAVYTDFSKAFDKVSHKLLVKKLATYGVTGSLLKWFSSYLAGREFYVVVNGFRSGGYAIASGVPQGSHLGPVLFIIYINDVISCFHSTSIFLFADDLKISRAIRSQQDVILMQEDIDRLPAWCDNNKISLNSSKCSHIKFTRKINILNSAYQINGVNLCEVDVVRDLGVILDSKLTFVPHIENIISRSQRMLGFVIRNGKVFQHPHTKLVLYNSLIRSILEYCSVIWRPHYATHSLRIERVQKRFIRYLGYSKGRQFKYLPYLDKLGCYKMSTLEARRQLLDLRFAYKLLHNTIDCPQLVCRLNFRVPRRPPRKPITPLAPPLRHTVFGANSPIPRMCKLINERSDLVDVYADSISKFVRRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -