Onob019995.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743227.1:21959476-21963016[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.045 2.4e+02 2.5 0.1 14 45 43 74 38 77 0.78 2 7 2.3e-05 0.12 13.1 0.2 21 50 78 107 75 110 0.90 3 7 0.051 2.7e+02 2.3 0.1 21 44 135 158 130 165 0.85 4 7 0.00013 0.7 10.6 0.0 25 47 167 189 161 195 0.89 5 7 0.0048 26 5.6 0.0 26 48 196 218 190 221 0.92 6 7 0.063 3.4e+02 2.0 0.3 23 45 248 270 243 277 0.85 7 7 0.25 1.4e+03 0.1 0.1 21 44 274 297 270 306 0.79
Sequence Information
- Coding Sequence
- ATGAATACAAGCGATTTGAAAAGATCTCACTCTACGGACGATGCGTATAGTTCGCTGCGGGACAGTGGCGTATCAATTTCTGGAGAGTTTTCAGAAAACGATCAAACCAGCACCGACAgttcggaaaggaaaaaaccgaGGAGTACACTGCCAAAGGTTCATGAATGCGCAGTCTGTAGTAAGAAGTTTGGCGGGAGGACCGACTTGCGACGCCACCTTCTCATTCATACAAATGAGAAACCTCATAAATGTGAAATCTGTCAGAAAGCTTATCgtcaagaaataaatttaaaaaatcacatcaaGACATCGCACAGTGATAAAAAAGAGTTCGTATGTCGATTTTGCATGAAACCATTTCCATTAAAGCAGCGATTAAGACTCCACATACGGTTACATACGGGAGAAAAGCCATATTCTTGCCCACATTGCACCAAAACTTTTGCCCGAGGCGGTCAATTGAATCAGCATTTACTAACTCACGACAAGcagaaaaagaatatttgtgAAATCTGTTCTACAGCATTTTCAAGTgaaagaaatcttaaaaaacacaTGGAACTGCATACGGAGGGGAGAAATTATGCCTGCAAAATATGCGAGATGATTTTCACAACAAGTAAGAAACTTCAATCCCATGTTAGCCTGGAACATGCCGAAGTCAACGAATTCGAATGCGAAATCTGTGAAAAGAAGATCAATGGTGATGTTGAAACTCATATGAAAATGCATGTCCGTGCTAAGCCCTTCGAGTGTGAAGTATGCAAAACGGTGTTCCGgtcaaaatgtcagattaaaaTTCATATGAGAGTACACACCGGAGAGCGTCCATTCCAGTGCAGAGTATGTTGGCAAACTTTTGGACACGCAAGCGTTCTTAAATTGCATATTCGGAAACACACGGGAGAAAAGCCTTTTTTATGCGTACTATGCCAGGATAACCAAATCGGCTTTTCTCAGCTCACTCATTTGAAAACTCACATGAGAGCTATTCATAAACAAGACAAAGCATACGTTTGTGAAGGTTGCAAGGAATGCTTCAAAGTTAAGTTCCAACTAGAGGGACACATGAACACTTGTAAAGAGCTCGCATCATTAAAGAAACTCGATCGAAATTCTGAAAGTGAGAAAATCCGAAGCAACGATGCTCAGGTGCTCGAACGTATAAGATACCTTATAGCAGTGctactgaaaaaaatatcgacTCAAGAAAAACTGACTAAACTCGGATTTGAAAAAAGACTTATAGATAATGTACTGGTTGCCTCCCTAAAACTAGCAAATCGCAAATGCTACGAGCAAAAGAACATCAACGAACTCGAtcgtttgaaattgaatatacAAGAATTTTTAGAATGGATAGTACCATCTCAGGTAATGGATGCATTCAAAAAAGAATGTTCGTCTGTCGAAAGTATCTTAGATAAGATAGTCactatgtatttgaaaaaaaccaaaGGAGTAGACCAGTAG
- Protein Sequence
- MNTSDLKRSHSTDDAYSSLRDSGVSISGEFSENDQTSTDSSERKKPRSTLPKVHECAVCSKKFGGRTDLRRHLLIHTNEKPHKCEICQKAYRQEINLKNHIKTSHSDKKEFVCRFCMKPFPLKQRLRLHIRLHTGEKPYSCPHCTKTFARGGQLNQHLLTHDKQKKNICEICSTAFSSERNLKKHMELHTEGRNYACKICEMIFTTSKKLQSHVSLEHAEVNEFECEICEKKINGDVETHMKMHVRAKPFECEVCKTVFRSKCQIKIHMRVHTGERPFQCRVCWQTFGHASVLKLHIRKHTGEKPFLCVLCQDNQIGFSQLTHLKTHMRAIHKQDKAYVCEGCKECFKVKFQLEGHMNTCKELASLKKLDRNSESEKIRSNDAQVLERIRYLIAVLLKKISTQEKLTKLGFEKRLIDNVLVASLKLANRKCYEQKNINELDRLKLNIQEFLEWIVPSQVMDAFKKECSSVESILDKIVTMYLKKTKGVDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01116613;
- 90% Identity
- iTF_01116613;
- 80% Identity
- iTF_01116613;