Oale016458.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- ZEB2
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000110.1:101636-107141[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.4e-05 0.0058 17.6 2.9 1 23 54 77 54 77 0.97 2 11 0.0012 0.11 13.6 0.8 1 23 83 105 83 106 0.95 3 11 0.0085 0.76 10.9 4.5 1 23 109 131 109 131 0.97 4 11 0.062 5.6 8.2 1.3 2 23 135 157 134 157 0.94 5 11 0.00016 0.014 16.3 3.0 1 23 160 183 160 183 0.97 6 11 0.0037 0.34 12.0 1.5 1 23 186 208 186 209 0.95 7 11 0.036 3.2 9.0 0.1 3 20 218 235 217 237 0.93 8 11 5.3e-05 0.0048 17.8 0.1 2 23 250 272 249 272 0.94 9 11 3e-07 2.7e-05 24.9 1.9 1 23 278 301 278 301 0.98 10 11 0.0001 0.0094 16.9 0.8 3 23 312 332 311 332 0.97 11 11 8.9e-05 0.0081 17.1 0.2 1 23 338 361 338 361 0.97
Sequence Information
- Coding Sequence
- ATGGCTAACTTAGAAGTAAAGGAAGAGATAAAGGAAATCTTTAGTGACCAGTGTCGGACTTGTCTCAGTATTGGAAGAAAAATGGTGCCATCCGAAGAATTCGCCGATGTATTCCGTAGTATTACTTCTAATGAAATGGCagataaacattttgaaaaattcaaatgtaaaGAATGTGGGATTGGTTTTAAAAAGAGAAAGTTATTGGAGGTGCACACTTTGAAATGTCATGGTGAGgtTGAATCATATATTTGTGGTGTATGTCACAATAATTTACCAAATAAAGATCAATTGACTGCTCATATAAACGATCATCATTATGTACACAAGTGTAGAATTTGTGATCAAGtatgtgttaataaaaatcaaagatGGCGTCATTTGAAAGATCATAAAGTGTTGCAATGTTTAAAATGTGGTTTACTCTATGGgAGTCGACGGGAtttctttaaacattataaagagAGGCACGAGAAATTTATATGTGACTATTGCGGTATTAGTTTCAAAATGAAGTACTGTGTTAAGGATCATATaaagAAGCAGCACACGCCGTTCGAATGCAAACCATGCTCGAAACGTTTCGCCCGTTCCAATGGGCTATGGCTTCATAACAAAATTCATCATGGTAGGCCGTCCTCGCCTGCATACTGCGTGGAGTGTGACAGAAGGTATCCAGACAGATACCGATACAGGTGGCACTTGGCAAACAGCGCAAAGCATAGGCCGCGTAAAAAATTGAGGATCCCATGTCCAGAATGtgataaagtattttcaaaGAACATATACATGAAGGACCACTACAACCTGGTGCACTTGAAGAATTACAAGTATCGATGTGAGAAATGTAACAAGAACTTCATCCGAAACGCGGATCTGACTAAGCACACCCGCAAAATCCACGAAGGCATCATCCCGCCGAAAAATAAGATCTGCTATATGTGCGGCCGAGGATTCactACCAACAAGATCCTGACCAATCATCTGCGGACCCACACCGGTGAGAGGCCTTTCGCCTGTGCTCATTGCAAAGCGCGATTTGCACAGTCCGCCGCACTGGCTTCCCACGTACGAACAATACACTGCCGATAG
- Protein Sequence
- MANLEVKEEIKEIFSDQCRTCLSIGRKMVPSEEFADVFRSITSNEMADKHFEKFKCKECGIGFKKRKLLEVHTLKCHGEVESYICGVCHNNLPNKDQLTAHINDHHYVHKCRICDQVCVNKNQRWRHLKDHKVLQCLKCGLLYGSRRDFFKHYKERHEKFICDYCGISFKMKYCVKDHIKKQHTPFECKPCSKRFARSNGLWLHNKIHHGRPSSPAYCVECDRRYPDRYRYRWHLANSAKHRPRKKLRIPCPECDKVFSKNIYMKDHYNLVHLKNYKYRCEKCNKNFIRNADLTKHTRKIHEGIIPPKNKICYMCGRGFTTNKILTNHLRTHTGERPFACAHCKARFAQSAALASHVRTIHCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01494501;
- 90% Identity
- -
- 80% Identity
- -