Oale003964.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000018.1:2032135-2049234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.26 23 6.2 0.1 2 23 299 320 298 320 0.87 2 18 0.00039 0.036 15.1 0.1 1 23 330 353 330 353 0.95 3 18 0.017 1.5 10.0 2.2 1 21 487 507 487 508 0.93 4 18 0.03 2.7 9.2 3.8 2 23 572 593 571 593 0.95 5 18 2.3 2.1e+02 3.2 1.6 1 23 605 629 605 630 0.89 6 18 2.8e-05 0.0025 18.7 0.3 2 23 636 659 635 659 0.97 7 18 0.06 5.4 8.2 0.2 1 23 665 687 665 687 0.93 8 18 0.0019 0.17 13.0 3.3 1 23 693 715 693 715 0.98 9 18 0.61 56 5.1 0.0 2 19 726 743 725 746 0.87 10 18 0.089 8 7.7 0.1 1 23 818 840 818 840 0.96 11 18 1.8 1.6e+02 3.6 7.2 1 23 847 869 847 869 0.95 12 18 0.0012 0.11 13.6 1.8 1 23 910 933 910 933 0.95 13 18 0.0029 0.26 12.4 0.8 1 23 940 963 940 963 0.98 14 18 0.034 3.1 9.0 0.1 2 23 985 1007 984 1007 0.95 15 18 0.0033 0.3 12.2 3.0 2 23 1033 1055 1032 1055 0.94 16 18 0.0016 0.15 13.2 0.2 1 23 1067 1089 1067 1089 0.96 17 18 7.9e-05 0.0071 17.3 0.1 1 23 1095 1117 1095 1117 0.98 18 18 6.6e-05 0.0059 17.6 0.6 3 23 1125 1146 1123 1146 0.95
Sequence Information
- Coding Sequence
- ATGGAACAGCAGCTCCCTCCTTTAATCCTTTGTATGGAAAACCTGAGTGGAGAAGAAGTAACACTTAGCATAGAACCGAATGATGATTTCCAAAGTTTTCTGGATAAAGCAAAGTCGACATTAGGTTTTGATGTCAATATTAACTCTATAACTGGTGACCAGTCCGtttcattaaatgaaaatatttatcattacctTTTAAATTCTGAATTAAATTTTCGGAACGATTCGCAATTAAATAATCCAAATTACCCTCCGAAGTCAGACCAAGTTTCACAAAGCCCTGATGGTTTTGTTTACGTTCTAGACGACGGTACTCAGATACGTGCCTCTCAAATACATTTTGATAACGAAGATCCTCCGGTAGATTTGACGGCTGAAGAAATACCGTTTGTAAAATATGCAAATGATAGCGcagatgaaaatgaaaatagagatttaaatattgaagacACGAAAAAGATTAACATAGTTGAAAGTCCCGTTAAACGATGGGCAAGCAGGAACTCTAGTCCAAAATCCAGCTTCGTCAATAGTTTACCCTTCAAACTTgTAGTAGATTTCCAAGTGGCACAGATTGCAGATGTAACGGATAAAATAGAAACACGACATGTCAAAGAGCCACAGGAAAGTGAAAAATTGGAATTCGTGAAGGTTGAAATTGGTTCTGATGGAGAGATTGTTACGAAATGTATAGATAACGATACTCGGTCTTCGGATGATGTTGTTATTGTAAAAGATGAGAAAAAAGAAAGTTCCAGCGATGTCGAAATCATTGAAAATGAACCTGATattgatgaaaatattatagataatttgGAAGACGCtgatgaagaattaaaagaatttttaggGCTATATCAGTGCGACGAGGCAAATAAACTTAAGGAATTAAAATGCAGGTTTTGTGATCGAGTCTTTGAGGATGTAAGCGGAGTGATAGACCATGGTGAAGAACACAAGCATATCTTAGACGACGGAGAATTATTCCCCTGTCCATTGTGCGATTATgGTTATGCTAATTTTAAATGGTTGAAAAGACATCTTAAAGCGGTACATGATAAAGCGAAACCTTCTGAAGCTAAAAAGGAAACCTGTGAAGTCGATGGAGtttttactgATAACAAAGTTGCCGCTCCCACATCTCCAACTTCATCTCCGGTAGCCAAGAGGACGAGAAGCGCTGTAAGGAAGGTCGATACTGAAAACGAGAAAGATTCAGattctACAGAAAAAACTACGGAACGcgcaaataattttactaccaaACTTGAATcgAACGAATCGACCTTAACCGTGAATACTGAAGTGAAACAGGAGTGCCTGGACAGCAGCGACGACGAGGCGATATGGATTGTGCAGACCGTCGGCCACGAGGCGACCGAACAGTTGGAGAACCTGCTGAAGGTCGCTGGGGGTAACAATGAAGAAGACAAAGAGGAGAACACtagaaaaaaacacaaatgtGATAATTgcagTCAAATATTTCCCACATCCGACAGCTTGGTCTCTCACAAGTGTCGGCGGCGTGGTAGGAAACGTAGGGTGCAGGGTAAAGACGACTCAGTTATTTGTGTACCATCTGAAGAGGACTTTTTTAGGAGAGCTCAAGGACGACCTAGACAAAAACAGGAAGATGTTAACAATGATTTGCTTGTCGTGAGACCTCGAAAGAGAAGGAATCGGGAGCCGACCTCCGATCCTCAAATCGTAACCTGCCATAATTGCAACGAGTCCTTCACGTCCAAAGTTCGACTCAAATTTCATATGCAGTTCCATGACACCACAAATCTACTGACCGCCGACGGTCAGTACGCGTGCCCGGAATGCGAGGGCGCGCACTTCCCAACGGAGAGTGAACTCTTCGACCACGTTCACTTCCAGCACCACAAGCAGAAGCGCTGGCAGTGTCCAGTAGAGGACTGCGGGAAGACTTTCTATCTGAGAGCAACGCTGACGAAGCACAGCCGcacgcacacagacacacGCCGCTACGTGTGCGTCACATGCGGGAAGAGATTCCTCGACAAGCAGACCCTGGACGAACACGGTGTCACGCATTTGCAAATAAAACCCTTCCAGTGCCACATCTGCTTGAAGCAGCTGACGCGCCGCTCGCGCCTGCGCATGCACTTGCGCGCGCACGAAGAGGAGCTCGCGCCGCGGCTAGTGCTCGTGTGCGCGGCGTGCGGGCGCGCCTTTAGGGACACCAGCGATGCTGAGGAGCATGCTAGTAAATCGAAAGAATGCATAGAGCAGATAAGTCCAGCCGTTAAAGAAGAGAATGAAGTGTCAGTTCAGCTTTCGCCAACTAGCGGTCTGGTCACGCACACCGTGGCTGTTGTTGCGAAATCGCCACAAGTGGACTGCGGACCGGAAGGGGAATCCCTGTTGGCAACCCTCACTGACTTCGCGCGGATTATTATCAGAGTCGTCGAGATTGAAAAAGCCTTTCGGTGCGAGTACTGTGAGGATGTTTTCTACTTAGAGGATGCACTGAACAGCCACCGCGTCATACACAAGGGCGTCAAGAATCCGTTCACTTGTCACATATGTAAAGTGAGCTTCGCTACTTACTCCAGATGCACAACTCATAAGACGACCCACGGCTTCTACAAGCGTTCGCTTGCGGACTGCAAGAAGTCCGCCAAATCACCCGGCACATCGGAGGCTGGACCGTCAGCAACCGGCATTTTGGGATATGGAGGTTTCCCTGTTGTCAAGCATTTCCTGTGCGAGGACTGCGGCAGGTCTTACCTACACTGGACATACCTGCAGGTGCACCGTCGCATGAAGCACGCCAACGAGAACTTCCTCTACAAATGTAACCAGTGTGAACTCACCTTTCCCAATAGTTGGAGTGTCGCGTACCACAGAAAGAAGATGCATGGTAAGAGCGGACCGGAAGACGGCGGCGGTGCCACTAAAATAGCGCGAGACGATTACAGAATACCATGTCGTGATTGTAGCGAAGTGCTGCCGAACAAAACAGCGCTTTATGCGCATCGCCAGAAAGAGCATAGTGACGTGACGCTTTCCATGAGCGATGAACAAGGCGCGGACTCGGCGGGACGCACGCACGCCACGCGCGCCACCTCGTGCTGCAAGTGCGGCCACAACTTCACGGAACCGAACGCCCTGCAGCGTCATCTCAAAGAGGTTCACGGGCACGAGGGCGAGGCTCGTGCAACGCGTGCGCATGCATGCGCCGTGTGCGGGCGCGCGTTCCGTTCGGCGTCCGTGCGCAACGAGCACCTGCGCGTGCACACGGGGGAGCGACCCTACCCCTGCGACGTGTGCGGCGTCGCGTTCCGACGGTCGACCGCTATGCGCAATCACCGACTGATTCACTCGGGAGTGCGCGCGTGGGCGTGCCCGCGCTGTCCCAAACGCTTCCGCATCCGCTCCGACCTGCGTACGCACCTGCGCCTCAAGCACCCCACGCACATCGTCGTGTTTGAGATGAAGGGTTTGAACCCCACGTACGAGGAGATAATGCAGCACATTCGCGACAACAACATCACCCAGGGTCGAATCATCGAGATCACTAAAATGTGTTTTGAGaagGGTACAACCAGCATAGTACCAAACAGTGCGCGCGCGTTGTCCCTGCTTAGCGGGGTGCCGCGCACCAAGATAACCTGTGAACCTCCAGCGCCTGTTAGTACTGataTGTTCATACCCGTGCGTAGAGGCAGGGGCATCGCCAAGAACCCTAGGCGGCCGAAGATACTTCAAGGTTCACACGAGGAATCCGAGCTAGAGACGAGCACCTACCCCCTGCCTATTGACGGTAGTGGAGAGGAGCTGGGGGAGCTGAACGTGCAGCTATTGATGCGCGAAGGCGCGCTGGCTCCAAGCCAAGTGGTTCAACTTCAGCTGGACGAGAGCATATGGAATAAACCCTCGCAATGA
- Protein Sequence
- MEQQLPPLILCMENLSGEEVTLSIEPNDDFQSFLDKAKSTLGFDVNINSITGDQSVSLNENIYHYLLNSELNFRNDSQLNNPNYPPKSDQVSQSPDGFVYVLDDGTQIRASQIHFDNEDPPVDLTAEEIPFVKYANDSADENENRDLNIEDTKKINIVESPVKRWASRNSSPKSSFVNSLPFKLVVDFQVAQIADVTDKIETRHVKEPQESEKLEFVKVEIGSDGEIVTKCIDNDTRSSDDVVIVKDEKKESSSDVEIIENEPDIDENIIDNLEDADEELKEFLGLYQCDEANKLKELKCRFCDRVFEDVSGVIDHGEEHKHILDDGELFPCPLCDYGYANFKWLKRHLKAVHDKAKPSEAKKETCEVDGVFTDNKVAAPTSPTSSPVAKRTRSAVRKVDTENEKDSDSTEKTTERANNFTTKLESNESTLTVNTEVKQECLDSSDDEAIWIVQTVGHEATEQLENLLKVAGGNNEEDKEENTRKKHKCDNCSQIFPTSDSLVSHKCRRRGRKRRVQGKDDSVICVPSEEDFFRRAQGRPRQKQEDVNNDLLVVRPRKRRNREPTSDPQIVTCHNCNESFTSKVRLKFHMQFHDTTNLLTADGQYACPECEGAHFPTESELFDHVHFQHHKQKRWQCPVEDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELAPRLVLVCAACGRAFRDTSDAEEHASKSKECIEQISPAVKEENEVSVQLSPTSGLVTHTVAVVAKSPQVDCGPEGESLLATLTDFARIIIRVVEIEKAFRCEYCEDVFYLEDALNSHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADCKKSAKSPGTSEAGPSATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSVAYHRKKMHGKSGPEDGGGATKIARDDYRIPCRDCSEVLPNKTALYAHRQKEHSDVTLSMSDEQGADSAGRTHATRATSCCKCGHNFTEPNALQRHLKEVHGHEGEARATRAHACAVCGRAFRSASVRNEHLRVHTGERPYPCDVCGVAFRRSTAMRNHRLIHSGVRAWACPRCPKRFRIRSDLRTHLRLKHPTHIVVFEMKGLNPTYEEIMQHIRDNNITQGRIIEITKMCFEKGTTSIVPNSARALSLLSGVPRTKITCEPPAPVSTDMFIPVRRGRGIAKNPRRPKILQGSHEESELETSTYPLPIDGSGEELGELNVQLLMREGALAPSQVVQLQLDESIWNKPSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149010;
- 90% Identity
- -
- 80% Identity
- -