Basic Information

Insect: Ornithoptera alexandrae
Gene Symbol: -
Assembly: GCA_029030555.1
Location: JARDVY010000037.1:4068067-4076698[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.016 1.4 10.0 1.4 3 23 242 263 241 263 0.92

2 23 0.24 22 6.3 0.3 1 22 642 663 642 663 0.95

3 23 4.8 4.3e+02 2.3 0.3 1 22 705 726 705 728 0.82

4 23 0.39 35 5.7 0.5 2 21 738 757 737 758 0.93

5 23 0.92 83 4.5 0.1 2 23 766 788 765 788 0.89

6 23 0.0043 0.38 11.9 0.1 3 23 809 830 807 830 0.96

7 23 0.0046 0.42 11.7 2.5 1 23 836 859 836 859 0.95

8 23 0.089 8 7.7 0.0 1 23 885 908 885 908 0.90

9 23 0.0039 0.35 12.0 3.5 1 23 913 935 913 935 0.97

10 23 0.0072 0.65 11.1 0.3 1 23 941 964 941 964 0.95

11 23 0.0016 0.15 13.1 1.3 1 23 978 1000 978 1000 0.97

12 23 0.00013 0.011 16.7 1.8 1 23 1049 1072 1049 1072 0.97

13 23 0.0048 0.43 11.7 1.8 1 23 1135 1158 1135 1158 0.96

14 23 0.00078 0.071 14.2 2.1 2 23 1182 1204 1181 1204 0.95

15 23 0.0039 0.35 12.0 0.0 2 23 1210 1232 1209 1232 0.94

16 23 0.007 0.63 11.2 0.2 1 21 1275 1295 1275 1296 0.95

17 23 0.0003 0.027 15.5 1.0 1 23 1306 1328 1306 1328 0.93

18 23 6.2e-05 0.0056 17.6 0.3 2 23 1418 1440 1418 1440 0.93

19 23 8.8e-07 8e-05 23.4 1.3 3 23 1447 1467 1446 1467 0.98

20 23 0.0031 0.28 12.3 0.0 3 23 1488 1508 1486 1509 0.94

21 23 0.1 9.2 7.5 0.0 1 23 1531 1553 1531 1553 0.98

22 23 0.019 1.8 9.8 0.6 1 23 1559 1582 1559 1582 0.95

23 23 0.00063 0.057 14.5 0.4 1 23 1590 1613 1590 1613 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.016	1.4	10.0	1.4	3	23	242	263	241	263	0.92
2	23	0.24	22	6.3	0.3	1	22	642	663	642	663	0.95
3	23	4.8	4.3e+02	2.3	0.3	1	22	705	726	705	728	0.82
4	23	0.39	35	5.7	0.5	2	21	738	757	737	758	0.93
5	23	0.92	83	4.5	0.1	2	23	766	788	765	788	0.89
6	23	0.0043	0.38	11.9	0.1	3	23	809	830	807	830	0.96
7	23	0.0046	0.42	11.7	2.5	1	23	836	859	836	859	0.95
8	23	0.089	8	7.7	0.0	1	23	885	908	885	908	0.90
9	23	0.0039	0.35	12.0	3.5	1	23	913	935	913	935	0.97
10	23	0.0072	0.65	11.1	0.3	1	23	941	964	941	964	0.95
11	23	0.0016	0.15	13.1	1.3	1	23	978	1000	978	1000	0.97
12	23	0.00013	0.011	16.7	1.8	1	23	1049	1072	1049	1072	0.97
13	23	0.0048	0.43	11.7	1.8	1	23	1135	1158	1135	1158	0.96
14	23	0.00078	0.071	14.2	2.1	2	23	1182	1204	1181	1204	0.95
15	23	0.0039	0.35	12.0	0.0	2	23	1210	1232	1209	1232	0.94
16	23	0.007	0.63	11.2	0.2	1	21	1275	1295	1275	1296	0.95
17	23	0.0003	0.027	15.5	1.0	1	23	1306	1328	1306	1328	0.93
18	23	6.2e-05	0.0056	17.6	0.3	2	23	1418	1440	1418	1440	0.93
19	23	8.8e-07	8e-05	23.4	1.3	3	23	1447	1467	1446	1467	0.98
20	23	0.0031	0.28	12.3	0.0	3	23	1488	1508	1486	1509	0.94
21	23	0.1	9.2	7.5	0.0	1	23	1531	1553	1531	1553	0.98
22	23	0.019	1.8	9.8	0.6	1	23	1559	1582	1559	1582	0.95
23	23	0.00063	0.057	14.5	0.4	1	23	1590	1613	1590	1613	0.96

Sequence Information

Coding Sequence: atgagtGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCTATAtttcctaccaccagttcggATGACTCGGAACCTCATGTCCTCGCATCGAAAATTAGGGATTGTGTGTCCGTAGAGATAAACGAGGATGACGACTTGCCAACTAATGTGTGCAGAAAATGCTGTGACAATGTGAATAACTGGCATATTTTTAAGGCTGTATGTGAGAGGACTCAAAACAAACTAcagtctttattaaaaaatgatgGCAGCCAACTAGAAGAGGTGCACATAAAAAGTGAACCTTTGTCTGATGAGGCTTATGATGATGGAGTCATTGTTGATGCATCATATCCTGACCTTGAgAGTGCTTCTAGTAAACTTCAACAAGAAGGCCCTCCTATTCTGGCTTCATTGGGTCTCACACCAAGAAGTGATAAGAATTATATAGATCCCCGGATGGACTGGCACCGGGTGCACGCAATATTGGATATGATTCAAGATGAAGAGGTCATTGACTCTCTGCAGTCTGCTGAAGAATGTGATGGTATGGAGAgtgaaaataatgaagaagaCGACGACGACGAAGAAGAGATGAATGATAACAGTCAACATTTCGCAAATGTACCTAATATGCCTGAGGTCTCTATCACTGTTATGCGTCCATCTGGAGAAACTTTGCACGCTCGTCAAGGAATCCAACAACTTGCTTCTAAGGACTGCTTAGTGTGTGGTCGCTCTTATAGATATTCCCATAATGCTAGACGTCACGAGCTCAATTCTCACAATTTTGATagatatacaaacaaaattacaacCAAAAAGTCGCATAATGTACACATGCATCCAAAACTTAGGCCCAATCCATTTAATCCCAAAGCTAGACTTATGCCAAATCCTATCAGCCATAAAATGCAATTAATCCCTAAAGGAATAAGCGCAAAAATTATTCAAGGGAATTCTGTTTCTTCACCAAAACCTATACCAATTAAAACGTCAAACATTCCTCATAATAATTTGCCATATCCACTTCGTATAAAAGCACTTAAAGActtacaaataaagaaaaaagaaccGCAAATtcttaaaactttattgaCAACAAAACCGGAAGTTTTAATATCAGAACCAGAAATAATGAATTCGGGTCCAGAAAGTCCAGAAACCTTGATATCCGAGCCAGAGATAGCATCATTTCAAGTAGAAGCTATTCTGTCTGAACCAGATGTTTACAATCAACAAGATGACGAAGATGTAGATTGCGAAACTCAAAATAATCAAGGTCAAAATTATGATACTGTAGACATGGAGTCTGATAATGAGATTGAAATTGCTCGACAACAAGAATGTGGTGTCGAAGTTGATCAACAAATAGATAACGAAGGGGAGGATGGAAATGGAATGGAAAATGCAgataacgatgatgaaaaTAACTTGGAAAGAAATCATAGCGACAATGATCAAATTGACGATAATGCTGATAGTCAAGACGTGTTGCAAATTGTTAATGACGTTGAAGGCAGAGGGGATGATGAAACCAAAGAAGGCGAAGAAGGGAACGAGGAtagagatgatgatgagcagCTAGAGTATAACCACGATGACGATTACGACGACTTACCTCCTATAGCTCCAGTCGTAGAAATTAATGAAGATATGCAAACAAATTCCTACAATAGTGAAGCaaacgaagaagaagatatgGACGAAACTGGCGACGCCAATGAAACCGCCGATGATGTTAAAGAACTTGACCCTGATAAATTGTATGTAACAAAAACACAAAGAGACTTTATACTCAAATATCGTGACATTATCGAGCAGATAAACACAAAAAGGTGCCTTTGTTGTGACAGAGAGCATCCGCGGCGCAAAGCCGTGATACAACACTTACAGAAAAATGGACACAAGGTCCCGAAGCACACTTGTTACAATTGTGTTGTTACGTTCGGGCATATCGGCGCTTTGCTCAGCCACATGCGGTCTAACACTTGCACCGACTTGtggaaaattatatacaacgaAAACGGGATCACTGACGATTTAGTTTTGGAAGATGAACCTAAAGATACCAAAGTCCAATATAAAGACATCTTTAATGCTAGGTCGTACGCATGCAAGTTATGTCCTGCAAAATTCCAACTGAAACAGTTTATTATGAAACATGTTTTAGACGTGCACGAGGATGGCCAGTCCCGCGTGCAACTCGTGTGCGTCCACTGTAACTCCAGATTCAAGGATAAGGCTATATGGAAGAAGCACATCCGTAATGGGGAATGTACAGTATACATCTCGTGTGACTTATGTTCAGAGAGATTTGGTAACATGCAAGATTTCAATGATCACGCATTGGCTGTACATGCGGGAAGCTTTGACCAATCtgataatcaaaataaatgcGTCGACGGGAGACCGACCGACTGTCCGATTTGCGGTAAGAAGAATAGTAGTTATCCAAATTTAGTGAAACACTTGAAAATTATTCACAGTGAAGAAAAACCTCACTACTGCCAACATTGTGAATCTAAGTTTGAACAAGCTGCTGATTTAAACAAGCACATCTATATGGAACATTCTGACCGAACATTGGGAATGCAAAGCTACGAGCCGGATATGTCGCTCGTTAAAGAAGAAGCCGAGGAATATCACTATTCCTGTACAGAATGTAATGCAATATTTGAGACCGTCGACGCTTGGACAGATCATCAGGTGGCTGAACATAATCAAATTGCGCATCACTGTGATCAGTGcgataagaaatttttaagacCATCTGAACTGGCGGAACACAAGAATACGCATTTACGGGTAAAATTTTATCCCTGCAGTATTTGCACGAATTCGTACAGTACACCTCAGAAACTTTCCGAACACGTTCAGCAGAACCACCCGGGAGCCGCGGGAGCTTACGCACCTTTGGATTACGAATTTTTCTGCGACATCTGTATAAGATCGTTCAAAAGTCGCCAGGCGTACTCGAATCACATGCGTATACACGCTAAAGTGCCGACTACTAATAGAAAACCCGGGGATCCGAAAGGATTTGCTCCACAAATTGTCGGGAAACCAATTAGGTCATATTCTGTGGTACAGCCTAGTTTTCTTTCGTTTAAACCCAACTGTAATGTTCCTAATGCTCCTTATTCGTGTGATATCTGCGGAAAAGGTTTCATGCACAAGAAGAATATCTGGAAGCATAAGAAAGTGCTCCACGCCGATCTGGTTGGCGATAGGAACGATAGTGAAGAAAATACCATGCAAGCTTCTACTGAAGAGGATGAATACAATTTAGACGAAAATGGAGCCATTCTGTCGACTCCCCAGttcaatagttttaattttgctaATTTAACCAATAGCTTCCCGCAGCAGCAGCAGACTTCCCAGGACGCTACGCCTTTTTCTTGCGAGTTATGTTTCAAACGTTTCCCGCTCAGAACAAGTTTATGGAAACATAAACGTGCTAAGCACGGCATCATCAATGCGAGTGCCAGCGGCAGTGGTGACTCTCAAGGTATAATAGGAGAAGGTGGCAGATCGAGTTGtactatttgtaaaattacgTTCTCGGACAAAAAATCATACTATCGTCATAGAAAGAATGTTCACAAGTCTTCGGCACAGATGTGTAAAATTTGCGGGAAACCTTTAAATTCTCCAGTAGAACTGTACGAGCATTTAAAAGCTGCTCATGCTAGAGAGCTTCTGGGATACAACGCCAACCAAGGTTCCAGTAAACAGGAGATTGTTCAAGAGTTAGAAGTCGAGTATGAAGCTGACCAGGATTCGGTAGATCCCGCCATGGAGTATCAAGCTCGTTATCCATGTGACACTTGCGGTAAGCAGTTTGTAGGGTTGCTTGCTTTGCAAAACCACCAATGTATAAATCAATTACAGTCGTCCCCTCAAACTTTTGATTGCGAAATTTGTCACAAAAGCTATACCTCTATCTCTGCACTGAAGAGTCACCGGGGCTGGCATTTAcgttcccctgatggtaaAGCGGCTGCCAATAACACCGGCCTCTGGATGCCGCAGCACAAAGTCACTAGTAAAGTGAGCAAACACGAAGTTGTTGACCCGTCGCAACTTGCAAGAGTTACTCATGCAAACCCAGCGAGCATAGCCAAAAGAAGACTCCCGCCCGAAGTGGAAGTGACCGTCGTGAACCCAAATAAGAAAATGCGCTCCGACGATTCGCTAGAGTTGGAGCAACAGAATAATTCATCGACGGGTGCGGAAGATAGGTATTGTAACATATGCGATAAAGAGTTCACCAAGCGAGCGGCCTATCAACGTCACATGGACGAAGTCCATCAACCGAATTCGGTATTCTGTCCGTTATGCGACAAGAGCTTCACACGAAAATCTACGCTGATCGTTCATCTGAAGAAACATTATGATAGTGGAGAGGGCGGCTCCGCCCTTATCGATCAAATGGAGGACGATGCGATGGCGTGCGACATTTGCGGCGCGCAATATGACAGCGCGAGCGCACTCATCGCCCACCGAGCGATGCACCACGGCGACGAATCCGGCGAGTCGGAGGACGGGGACGACGGCGCCAGCGTCCCGCCGCCTGGCGAGTTCACCTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCGCGAGACCTCATCGCCCACCGCTCCATGCATGTGACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTCTACTTCGCGCGTGCTCTCGACCTCTCATCTCACACGCGCGCTAGGCACGCGGACAATGAGAAGGTGTTTTTTCCGTGCGCGATGTGCGAGCGGTTTTACATGAACAAGAAGAGCCTGCAGCGGCACATTGAGATGGCCCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPHVLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKAVCERTQNKLQSLLKNDGSQLEEVHIKSEPLSDEAYDDGVIVDASYPDLESASSKLQQEGPPILASLGLTPRSDKNYIDPRMDWHRVHAILDMIQDEEVIDSLQSAEECDGMESENNEEDDDDEEEMNDNSQHFANVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELNSHNFDRYTNKITTKKSHNVHMHPKLRPNPFNPKARLMPNPISHKMQLIPKGISAKIIQGNSVSSPKPIPIKTSNIPHNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLISEPEIMNSGPESPETLISEPEIASFQVEAILSEPDVYNQQDDEDVDCETQNNQGQNYDTVDMESDNEIEIARQQECGVEVDQQIDNEGEDGNGMENADNDDENNLERNHSDNDQIDDNADSQDVLQIVNDVEGRGDDETKEGEEGNEDRDDDEQLEYNHDDDYDDLPPIAPVVEINEDMQTNSYNSEANEEEDMDETGDANETADDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKAIWKKHIRNGECTVYISCDLCSERFGNMQDFNDHALAVHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCESKFEQAADLNKHIYMEHSDRTLGMQSYEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPQKLSEHVQQNHPGAAGAYAPLDYEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSYSVVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFANLTNSFPQQQQTSQDATPFSCELCFKRFPLRTSLWKHKRAKHGIINASASGSGDSQGIIGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSPVELYEHLKAAHARELLGYNANQGSSKQEIVQELEVEYEADQDSVDPAMEYQARYPCDTCGKQFVGLLALQNHQCINQLQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPSQLARVTHANPASIAKRRLPPEVEVTVVNPNKKMRSDDSLELEQQNNSSTGAEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPLCDKSFTRKSTLIVHLKKHYDSGEGGSALIDQMEDDAMACDICGAQYDSASALIAHRAMHHGDESGESEDGDDGASVPPPGEFTCAQCGDGVATPRDLIAHRSMHVTPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155687;
90% Identity: iTF_01176328;
80% Identity: -