Oale004741.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- MBD-R2
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000023.1:3234364-3242991[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-13 4.4e-10 39.6 0.0 5 57 758 810 754 830 0.90
Sequence Information
- Coding Sequence
- ATGGCAGTTAAAAAGTGTTGTATAGTGAACTGTAACTCATGTTCAACAAGAAAGGAAGATATTGGTGTAACCTACCACAAGTATCCCAAAAATGTGTCATTATGTGACACATGGTTATCTGTTACACGGCACAAACACTTTAACATAGCTACTACATCATATGTGTGTTCACGACACTTTTGTAAAAGTGATTTTCAAGTTTACAAGgattgtaaatatgttttaaagtcAGgTGCTGTCCCATCTATATTTCCGTGGAAAATTAAAACTCAAAAAATGGATTCATTTGAAACTAGCTTAGAAAGTGTGGATgagaaaaatttatcaaagaGCAGTAAAGAGTCAGAGTCAGAAAATTTGGATgctataaaaaagtttatagaaGACCAAGAAAAAGAGATActggaaaaaatatatgataaaactgATGcagatataaaagaaaaagatgaGTCAATAACTAATAAGATTGAGGTAACACAAGAAAGTAGAAAAATGCAAGAACCATTGGCAGTGGCAACTAGTGTAATGGATCTTATATTAAGCGAGTCGGAgtcaaaaatgttttctaaGAAGGATGATAGAAGCTTTGACAAGCAGTGCCTTAGCCCAGGAGAAAAGgGTAATAGTATGTCATTAACAGTTGGGTCCAAAGTTGAGGCAAAGGATTTTGGAGAGTTTTGGCATCCAGCCAAAATTGTTGAAGTGGATTATGATGAGATGGAAGTGTTAGTTCATTATGATAATGATCTTAAAAAGCATGATGAATGGATCAATGTTAGTAGTCCCAGACTAAGGCCATTAAGTAATATGTTCTCTCGATCACCTTCCGAATTATCGAATATGGAAACAGTAAAATTGGAATCAACTATTGTTAAAGATGATAGACTGGAAGAGaaaccaaaattaaaatttgttattggaGAAAGATGTTTAGCTCGTTGGAGAGATAATCGGAGATTTATGGCAACTGTTAATAGAGATTTAGGCAATGGCTCTTACGAGATAGTTTTTGATGATGGCTTCCAGTGGAAATGTACTACGAGCagaatgtataaattaaaagaatcatCAGATAGACTAGACCCGCTAATGATTGACACATCCTCCTCGTCTTCAACATCTGTCAATCCATCCCCTATCCCTTACGAGTCTGGTCCTAGTAACTTTTCTCcaggtttaaatttttctcaaaCACCTGCTTTCCATACTCACTTGTTTGACCCAACACGTGATTATTTAGGTTCAAAAAGTGAGCGCCGTGAAAAGAAACGAAAGTTGAACataaaagagatttttaatattggccagaaaaagagaaagaaaCAAAGGTCTTCTAAAGAAATGGATATTTCTGTGACAAAAACTATTAAGCAGAGAAAACCTTGGACTGTACGTAAGAAAATCAAAGTGGAATTCGATGTCCAAAATAAACAGGAAGTAAAAAACGACATCCctgacgCTGTAGCATCTATAATTGGTActgtagcaaaaaaaaatgatgaagtTAAACAAGAGGTAACATACAGAAACGAAACAGTAACCTCAGAATTGGACATTAAACCTAAGACGGAAGTggatattactaatatatcgcgaagcaatgatgatgatgatgatgaaaagtgTATGGGTATAAGAGAGGTATCATTCTCAGACACCAAAAATATTGATCCAGTATTAGATGAGGAGACAGAGCTTGAAAACTTTGAAGTGACTGATGACCAAAAGCACGAGGAAGTAATTGGTAGGATAAAAgaagttataattaagttagaaGATGGTATAAATAAAGCAGAAAATATAGATTCACCTAAGTGCATAATTACAGAAGaagataacaaattaaatataagagaACCTGACGATATTATCATGGACATTAAAGAAGaacaaacatttattgaaCAACCacagttaataaaaatcgAAAGAAATGAaggaaaagttaaaaaaagtacatcaaaattaaagaaaactaaaaagtTGAGGttgttacaagaaaaaaaggtTAAGAAACAGGTGGAGAAAGTTAAGTGTGAATTAGAAGAGATGAAACGGCAAGTGGAAGAGATGAAGAAACAGATGTTATTGAAGACGGAGGCACTGACTAGTCCAAAACACAATACAGTGATGCCTGAAAGTTTTTTGTTGCCTGGTGAATGGTGTTGTAAATGGGTGAATGGACAGCCAGTGGGGACTGTCAGCGAAATAGAAAGTGAAGTAAAAATTGATTCATCTGGTAAACCAACTCTACCGAGGCGCAGTGTGCAAGTTGAAGATAAACGATTACCGGAGGGGTGGACGAAGCACATGGTTCGAAGGAGTTTGGGAACTTCTGCTGGTAAATGGGATGTAGTTTTAATAagTCCAGAAAACCGTCGCTTCCATACCAAAACGGACATGCGAGGCTTCCTAGAGAACGAAGCTACTGAAGAGCTGAGACAGTATGAGAGTACTTTGCTTGATTTTGGGACCCATTTGAAGTTAGCGAGGCGAATGGGTTGGATCACCAAAACAGGTGAAGATGAACCGGTTATACCCATACCCGCCGGAATAATGAGCACCACGTCTCCTCTTATAAGGAGAAAGAAACTTGGCCTTAAAAGGGTGAAGAGTATTATGAAAGCAAATGAGGAGAGAAGAAGACAATGGGGAGTTGAAAACAAGATTAGAAGAATGCATCTTAGCAATGATGAGTTACCGGGAACCAGTAGTGACACATTTTTTGATTCGCTGGATGAATTTGGCAATACTGACTCGCCAAATGAAGATGGAtatgtatttGTTGGATCCTTAAAGGTGCAAGTAATAGATAATCTATTGCGTTGTCCGGCtgataattgtattaaaaactttagaaATAACACATTATTGAAAATGCACATAAAACATTATCACAGAGAACTTCGCAAATTGCTCGGTGTCACACCTAAAGTTCTAGATTTGGCTTATGCTAGAACCAGACCGACCAAGGCTGAAATGATTAAAATGAGAAACGAAACGGAAAGTAAGATAATTAAGGTTAAAATACCGAGACCGCCGAAACGTAATGAAGAtcaaaaaatagatattcaaGAGCTTGATTCTGAATTGAAGGTTGATATACCGCTTACACCAATGAAGGATGATAACATTGTGCCAAAGGTTGATGATTCACCAAAACTGCGCAATGTACTTACCAACAAACCAGTAAAGAGACCTAAAGTTTTACTTCCCGTTAGAAGATTAGAGAAAGATTTGAATGATGGAACAGCAGAATTGGAGCAGGAAATTAGGATGAATACACCAGTTAACATACCAACAGTTGAAGTGTTGGATTTTGAAACAGCTATATCAACTCATACGGTGACAAAACCTTTAGAGTTCAAAAAGAAAGCCATGAAAGGTTTCGCTACTTTTGCGAAGAAACCAATGAGCGAAGATGAGGAATGGTTGGTTATAAACTCTGATGTCGAGACGATGTCCAGCTTCCCTGGTTCTGGAACACCAGATTCCAGACAGACTATGGACAACAAGACATCTATTAATGCAGCAGCATCATCCGAATCCAATGATGATCAAAAAGAAACAATGTATACATACAGCGAGACTGGCGAGAGGATTAAGATAGTTCAGATGAAACGAGAGGAGATCATTAACTGTCACTGCGGCTACCGCGAGGAGGATGGGCTGATGGTGCAGTGCGAGTTGTGTCTCTGCTGGCAGCATGCACTCTGTCACAACATCCAAAAGGAGTCTgagGTGCCTGAGAAATATACGTGCAGTATCTGCCTGAATCCTCGACGCGGACGACGATCGAAGCGTTTCGTGCACGATCAGGATCGGATGTACGAGGGGCTGCTGGCGGGTGCGAGGCCCTGCGATGCGTTGCGTCGATCCCATGAGCTCGCTGGCAACTTGCTTCGCGTGCAGGATGCGCTGCACGCGCTGCGTGTCAAGTACTATGTGGCCACGAAAAAAGATCATCCGAAGTTATATCTTTGGGCAAACGACTGGGAAAGTTCTGAACTAAGTGTAACACAGGATAAGATAAACTCGGGTTATTCTGACCTTaacatcataataaataatataggcAAAGAGAACTTGCCAGTGAAGACAGATGACATTAAAGATGTTCAAATGGATGTTCGCATGTCTGCTATGGAGGAGAACGATGAGAGGTTCAGTCAGAGGGACATGCCACTTGGCTCTCAGACTCTGTTGAGTGGGTTGCTGTCCAGCCCCGGCGGTGCTTCGTTGGAATTGCCTATCAGTACGTCTGAGTTGGAGAGGTTGGCGAAGTGTGTACAAGATCAAGGGACGTGCGTCAGGGCGCCGCAGCCCGAGGCCGCGATTGAGAACGGCGCGTGCCGCGAACGCCTGCTAATGCACATCCAGCGCTGCCAGGCGCTTGTCGACGCGCGGCTGGACTCCATCGAAGCGCAGGTGGCTGAGTTAGAATCGCAAGACCCGTCATTCGAAGACGACGAGACCGCCGACTTCTACCCGCGGACCAAGCAAACCATTCAAATGCTTATGCGCGACCTCGACACCATGGAAGAGCTGGGAGTCGTTACTTGA
- Protein Sequence
- MAVKKCCIVNCNSCSTRKEDIGVTYHKYPKNVSLCDTWLSVTRHKHFNIATTSYVCSRHFCKSDFQVYKDCKYVLKSGAVPSIFPWKIKTQKMDSFETSLESVDEKNLSKSSKESESENLDAIKKFIEDQEKEILEKIYDKTDADIKEKDESITNKIEVTQESRKMQEPLAVATSVMDLILSESESKMFSKKDDRSFDKQCLSPGEKGNSMSLTVGSKVEAKDFGEFWHPAKIVEVDYDEMEVLVHYDNDLKKHDEWINVSSPRLRPLSNMFSRSPSELSNMETVKLESTIVKDDRLEEKPKLKFVIGERCLARWRDNRRFMATVNRDLGNGSYEIVFDDGFQWKCTTSRMYKLKESSDRLDPLMIDTSSSSSTSVNPSPIPYESGPSNFSPGLNFSQTPAFHTHLFDPTRDYLGSKSERREKKRKLNIKEIFNIGQKKRKKQRSSKEMDISVTKTIKQRKPWTVRKKIKVEFDVQNKQEVKNDIPDAVASIIGTVAKKNDEVKQEVTYRNETVTSELDIKPKTEVDITNISRSNDDDDDEKCMGIREVSFSDTKNIDPVLDEETELENFEVTDDQKHEEVIGRIKEVIIKLEDGINKAENIDSPKCIITEEDNKLNIREPDDIIMDIKEEQTFIEQPQLIKIERNEGKVKKSTSKLKKTKKLRLLQEKKVKKQVEKVKCELEEMKRQVEEMKKQMLLKTEALTSPKHNTVMPESFLLPGEWCCKWVNGQPVGTVSEIESEVKIDSSGKPTLPRRSVQVEDKRLPEGWTKHMVRRSLGTSAGKWDVVLISPENRRFHTKTDMRGFLENEATEELRQYESTLLDFGTHLKLARRMGWITKTGEDEPVIPIPAGIMSTTSPLIRRKKLGLKRVKSIMKANEERRRQWGVENKIRRMHLSNDELPGTSSDTFFDSLDEFGNTDSPNEDGYVFVGSLKVQVIDNLLRCPADNCIKNFRNNTLLKMHIKHYHRELRKLLGVTPKVLDLAYARTRPTKAEMIKMRNETESKIIKVKIPRPPKRNEDQKIDIQELDSELKVDIPLTPMKDDNIVPKVDDSPKLRNVLTNKPVKRPKVLLPVRRLEKDLNDGTAELEQEIRMNTPVNIPTVEVLDFETAISTHTVTKPLEFKKKAMKGFATFAKKPMSEDEEWLVINSDVETMSSFPGSGTPDSRQTMDNKTSINAAASSESNDDQKETMYTYSETGERIKIVQMKREEIINCHCGYREEDGLMVQCELCLCWQHALCHNIQKESEVPEKYTCSICLNPRRGRRSKRFVHDQDRMYEGLLAGARPCDALRRSHELAGNLLRVQDALHALRVKYYVATKKDHPKLYLWANDWESSELSVTQDKINSGYSDLNIIINNIGKENLPVKTDDIKDVQMDVRMSAMEENDERFSQRDMPLGSQTLLSGLLSSPGGASLELPISTSELERLAKCVQDQGTCVRAPQPEAAIENGACRERLLMHIQRCQALVDARLDSIEAQVAELESQDPSFEDDETADFYPRTKQTIQMLMRDLDTMEELGVVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01130049;
- 90% Identity
- iTF_01115769; iTF_01494327; iTF_01494381; iTF_01495794; iTF_01495064; iTF_01495839; iTF_01495104;
- 80% Identity
- iTF_01115769;