Basic Information

Insect: Ornithomya fringillina
Gene Symbol: TRERF1
Assembly: GCA_963978525.1
Location: OZ021691.1:12118824-12128809[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5e-05 0.0037 17.7 0.3 2 23 388 409 387 409 0.97

2 6 1.6e-06 0.00012 22.4 1.3 1 23 415 437 415 437 0.99

3 6 0.00013 0.0094 16.5 2.6 1 23 443 467 443 468 0.95

4 6 0.00043 0.032 14.8 1.3 2 23 706 727 705 727 0.97

5 6 0.0018 0.13 12.8 0.2 1 23 1846 1870 1846 1870 0.97

6 6 0.0001 0.0074 16.8 0.8 1 23 1929 1951 1929 1951 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5e-05	0.0037	17.7	0.3	2	23	388	409	387	409	0.97
2	6	1.6e-06	0.00012	22.4	1.3	1	23	415	437	415	437	0.99
3	6	0.00013	0.0094	16.5	2.6	1	23	443	467	443	468	0.95
4	6	0.00043	0.032	14.8	1.3	2	23	706	727	705	727	0.97
5	6	0.0018	0.13	12.8	0.2	1	23	1846	1870	1846	1870	0.97
6	6	0.0001	0.0074	16.8	0.8	1	23	1929	1951	1929	1951	0.98

Sequence Information

Coding Sequence: ATGTGCAGCGCTTCAGTGGGTACTGAAGGTTCGGTAACATTGCAACTACGAGATGCGAATTCAACTTCGTCATTTTCGCCATCATCCTCCTCCGACTCGAATCACTCACTAACCGCTGCCCGAATAGGTTCCCACACTGACGAAACCAGTTTAGAAAATGCTTTAACAATTGGTTATCCGGATCCGGAAATGCTTGCAGATGTTTTGGGTACCCTACAAACGGCAGCTTTAAAGAATAccaacattaatttttttaatagtggTAATGTtaacaagaacaataataacaacaataataatattaataaacaaataacaacaacaaatgccacaacaacaatacaacttAGTGAAACGGAAAAACGTGATAATAATCCCAATCCCACTACTAACCCCAACAATGATTCCAATCCAAATAACAATCAACATTACCAAATTGTGAATGTTGGCGATACTGGTAACGGTAGTAAAAATTGTcccaataatataaaaaatcgtttaactacaagtacaagtacaagtacaactacaacaaatcGTCGTAACAACATAGTAACGACAGCAAATGTGTCCAGTGGTAATTATCAAGCGTCAAATAGAGAAACATCCAAGCCATCCAATATATTGGCAACGACCACTGTACAAACTGTTTCCACCTCTACAAATACAACCAACAAAACCAACAGTTACattaaaaattgcttaatACGTAGCAGTAGTTGCAGTAACACAGCCAACATAACATCATTGGCTCAAATAATGAGCAATAGCAATACAACCAGCACAAGCATTGGTCCaactaacaacaataccaataacaataataataacaataccaacaacaataacattaacaacagTAATTGTAGCAATAGTAGCAGCTGTGCAAACGGCAATAATGGTACACCACAGCCCCTACAGAGTAGCAATCCTTTGACGTGCAATAACAGCAATTGCAGCAGTACCAGTAACTTCAGTTCCAACAGCAATGACAGTTGTTTCAGTGTGAATAGCaatagtaatagtagtagCGGCAATATTAGTGTGCGTAGCGTCTCTGTGCATGGCAATCGTAAAGTTCCTGGCGCTCTAGCAAATCCGcccaaaatatttaagaaaagccGCTCAAAGCTATCATCCCCAAGTCGGCACGGTCCCCAGCAGTGTCAGATTTGTAATAAGATTTTTGGAAATGCATCAGCTTTGGCTAAACATAAACTGACGCACAGTGACGAACGGAAATACGTTTGTGCGATGTGCTCGAAAGCATTTAAACGACAAGATCATCTAAACGGCCATATGATGACgcatagaaataaaaaaccatacgAATGTAAAGCGGAGGGGTGTGGGAAGTCATACTGTGATGCTCGTTCATTAAGGCGGCACACTGAAAACCATCATGCTGGCATAATAACTCCACAAAATCAAAGCCTCAACTCCGTGGCGGCAATCAATGGCAGATCATCAGCCAGTTTAAGTTTATCACCAGCCACAGCAAGCGGAGATGCCAACTCTCCAGATGGTGGTGCCACTTGTTTGGGCACTTATATTTCTAATGGCGGCACTGTAGTAGATGCCTCCACCGGTTTAGCTTTAACTGAGGAGGAACTCAAAGCTTTAAATGTCCCTTTAAAAACTGAAGTCACTTTATTATCACCCACCTCAACTACTGCCACTGTGTTATCAACAGGTGGACGAACAACATCACCTGCTTCGACAACAATTACTTTAACCGACAACGGTGGTAACTCCGATGGGGAAGGCTTAACACGCGAACAATTAGACTTGATTAGTAAAATTATGCGTCAAACTAAACAAACTACGGCGCAAGTAACTGTTTCGTCGCATTCCAGTTCCCAATCGTATAAAATTGATACATCATCAATTCAGGCGCAGACACAAAACTCCAGACCACGCACCTGGAACATGCAATTGTTGAATACCACACAAAATTTAGCGATTACGGTGGATGAGGTGACTAATGATATTACCTCGCAAAAAGTTGGTGCGATTCAAGCCGATGTGAATGATGCAGatgtaaaaatcgatttaacaggCGGTGTCACATCAACCAATATGTTGAATATTGTGAAGGTCGATCAAAAGCCGGTAGAGTGTAATTTATGTCATCGGAAATTTAAGAATACGCCAGCACTGAACGGTCATATGCGTTTGCATGGcggatattttaaaaaagatcCCGACTCGAAGAAGAGCGAAAAGAAGGAAAACAATGGACCACCATTACAGACAGCTAGTTTTGGGGTCCGAGCCTTgattgaagaaaaaattattagtaaACGTAGTAGAGATTTGAACAAGGGTGCCTTTGCTGTACCTGCCCCACCCACAAGTAATTTATCCAATAATCCGAGCCTGCGCAGATCCGTTAATGATTTGGAGAGTTTTATTAATTCGAAAACTCAAGCAAATCTTACCACATCTACATTAACCAATACAACGGGCACCATGCTACCTGCTAATGTGACCATAAAGAATAGCTCACGAACGCTATTAAATGCCCAAGACATGGGTTTACCACAAAGCATTGAAATTTTCAGTACTAAACAGTCTAAACAttcaataaataatgtaaGCGTTGGAGTGGGAACAAGTCCACCACAGACAACCACTGCTACGGAACGGAATATATCAATAAATGGCTCGAAAACGAGTACAGCAGCTGCATCTGTATCTgcggcagcaacaacaacagccacaatgaacacaataacaactacGACAACCCGAAGTACATCCACCGATACGAAAGATTCAACATTAATTGAGTTATTAAAACGTGGTACTCGCATTGCGATCACCTCAAAACAGCCATCTAATGCCCCGTTGGGTGGTGTAAGTCGTCCCATAGTCACcaataatagcaataataataataaccaaaGACCTCTAATAACATCGTCAGATGTTCAAGtgttgaataataataaaacgaaatTGTCGAATGCGAACTTTACCACATCAAATGGTATATCGATTACCGAAGCTGCTCCCCTATCCTTGGCCATATCACAAAATGCGAGCAACGCAAATGAGATATTTACTGTTACGTATGCTGGTGACAATTCCAACTTGTTTGGTGATGGTGAAGTGTTTAATGTGAATGAAGCTGAAATGCTTCTGCAAACGGTAGACACAATGCAACTATTGAACGATTCCGGTCAGGATAATCTTTTAAAACTTTCAGAACCCTCTGATCGTTTAGTTATGACAGAAAATTCTGTTAGACTTGGAGAAGGTTTTTCAAACACTTTAAATGGACAGCATAGACAAATTCTTCCAAATTTTCAGCAATTTCATTCCAAAGATCTAACAAACAATTGCATAAATCCCTCTATTAACGGCCGCTTAAACTCTCTGTCTCTTCCATTGAATGTTAAATCGCAATACGGCTCGTTAAATTCTCCACCACATTCTCCTCTGGCATATCCTACACCACCCTCCAGTCACGAGAATGTCACGCAAACTTCTCCCTACATTGAAGACAATCAACATTTCAGTGATTCGGCGAATGTATTCTTTAGCGAGACATTGATAACACCCTCAACATCGGGTTGCAGTGAGTTGGATAGCGATAACATTCTGAAATTGAAAAGTGTTTTGGAAAACAATAACTTCGACAACCATATAAAAGTGGAAGATTTACTTAATGATGCCAATACGGACACTGAGTGTGATTTGAGAGAATTTGCTGAAGCGAATCTGTCATTTTTAGATGAAGATCAAGATCAATTTTTAAACGATTCGGACAATGCTACATCCCCTTTGACGGAGTCCTTTTTTAATGCCGATATTGGTTCCGCAGAGGAGGTCAAAGAGGTTCTTGATGAAGTTTTGTCCGACAATCAAATGAGTTTACAATGCGAGAATCAGTCGGAGAATATTATCGACTTGTACTACTTGCCTGGTTTGAGTTTGCAGTCACAAATGATGCCCAATTCAGAGGATCCCTTGTTGTCTTCATCTCCACGCGATTTTGGTCAGCAGAAAATGAATCATCAAACCTCTGGTATAAGTAGCATTCCACCACAAAGCTCGAATATTATTACGAACGGAAGTTCGAATGTATATCACAGTAACAATGCAGTTCCATTGCAtgcattacaacaacaacaacagcaacatcccCAGAATATAGTacaatttgcaataaatcagcaacagcagcagcaacagcaaataTCTAACGACAGTAGTCAGGTTATAGTGACTGTACCAGATAATGGGTGTACTGGTGCAGCTTCATTCATGCAGtacaatttaccaaatttaCCGCAAGTacaaattcatcaaaatcagcaacaatcacaacaacaacaacaacaacaacaacaatatatagataCTAAAAACCTGCCGCCTACAATGACCGCCACCGCAACCAATTGTGGTGGTGGGGGTAGCAACAATAATCGAAGTACAATGGCAACTTTAAATGAGGCCTTGATGCAGCCGCTCATATATACAGGAACCACCGAGAGATTAGATATGAAATTAGAACTAACACAAAACCGCCACCTTGGATTAAATATTCAaccacagcaacaacaacagcagcagccaCAGCAGCAACCATTAAGAGGCACCGATTATAAACTTCaaatacattcaaatttaaattcggTTGCCTCTAATAATCAACCTACCGCGACGTACAATTCCAACGCCAACAATCATAGTACACCGAACACAATGTCCGTAATTACAACCACATTACAACCTTTATCCAATCAAACCAATTCCATTTTGAAAAGACGCTTAAAAGGCTATAATTCCTCAGACGTAACTTCAACTTCTAGCCActccaaatttcaagttctcTCACCCTATCGCTCGAAGCTACGTAAGCCCTCTCGAACTCATTACACTCCAGCCCCTATCCTGAATCCCGAACGTAAAGGACAAGGTTTGTACTACAACATATTGAAAGATAAATGTTCAAGCCTTTTGGGATTCGATACTTTTAAtgatgattttgatgatgCCGTTGGTCTGGTAGATTTTTCGGATGAATCTAAAGTGAATTTAGGTTCAGCCTATCAGGCTTCTTTGCCCGCTTTGCGAGAAAGAACTTTAGCAACTGGTGTTGAGGAACCGGTAGGTGCCGAACTTATGTGGGATCCCGAGGTGCAGAAGGATGAAAAGATACTCTTACGCTTCATTGACCTTATCAAATCATCTGCTGTACCTTTGGGCTGCCACACCGAAGAAGTAGCTTTACAAACATTGATGATATCTAAAGGCAACACATCATCGGCTGTCTTAACTCTTTTACAAACCCAATCGAATTCATTCCAAATGACTTGGACCGCCCTAGAATTGGAGATGTTTCTGAAAGGCTTGGAAAAGTATGGCaaagaattttgtaaaatatccaAAGAACTGGGCTCAAAAACCACGGGAGAATGTGTTCAAATGTATTATTTCTGGAAGAAACTGTGTGTGGATTATAAGATAAGCCATCTGAAAACCGAAACACCACCAAATAATCACGTCAGTGAAGCGAAACCCTATGTATGCGAACAGCCCGACTGTTCAGCGAGCTTTTCATCAAAGGCCGCTCTGCATGGTCACACTCGCATACACACGTATGGCCGAAACAGCCATAACCATAGTGCAACTAATCCAAATGCTAACATCACCACCCTACCCGGCTCAACCAGTACACCAGCTGGTGCATGCAATGCCAATACGCAGGCTAGCCACTCAGCCAGCTTACCCAAAGATTCCAATGCTACCACTTCCAAAGATAACAGCGATTTCCCCTGCAAGGTGTGCGGCAAagtatttaataaaataaaaagtcgTAGCGCTCATATGAAGACACACCGAGTAGCAGATAatgacacaacaacaacaacagcaacaacgacAGCAATTGTGCAAACTGTACAAATTATGaatcaaatacaaatacatcaACCACAGCAGctgcaacaattacaacaacagcagcaacaacaacaacaacaacaacagcaaccagCCATACGTCAagaacataataataattcataa
Protein Sequence: MCSASVGTEGSVTLQLRDANSTSSFSPSSSSDSNHSLTAARIGSHTDETSLENALTIGYPDPEMLADVLGTLQTAALKNTNINFFNSGNVNKNNNNNNNNINKQITTTNATTTIQLSETEKRDNNPNPTTNPNNDSNPNNNQHYQIVNVGDTGNGSKNCPNNIKNRLTTSTSTSTTTTNRRNNIVTTANVSSGNYQASNRETSKPSNILATTTVQTVSTSTNTTNKTNSYIKNCLIRSSSCSNTANITSLAQIMSNSNTTSTSIGPTNNNTNNNNNNNTNNNNINNSNCSNSSSCANGNNGTPQPLQSSNPLTCNNSNCSSTSNFSSNSNDSCFSVNSNSNSSSGNISVRSVSVHGNRKVPGALANPPKIFKKSRSKLSSPSRHGPQQCQICNKIFGNASALAKHKLTHSDERKYVCAMCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGIITPQNQSLNSVAAINGRSSASLSLSPATASGDANSPDGGATCLGTYISNGGTVVDASTGLALTEEELKALNVPLKTEVTLLSPTSTTATVLSTGGRTTSPASTTITLTDNGGNSDGEGLTREQLDLISKIMRQTKQTTAQVTVSSHSSSQSYKIDTSSIQAQTQNSRPRTWNMQLLNTTQNLAITVDEVTNDITSQKVGAIQADVNDADVKIDLTGGVTSTNMLNIVKVDQKPVECNLCHRKFKNTPALNGHMRLHGGYFKKDPDSKKSEKKENNGPPLQTASFGVRALIEEKIISKRSRDLNKGAFAVPAPPTSNLSNNPSLRRSVNDLESFINSKTQANLTTSTLTNTTGTMLPANVTIKNSSRTLLNAQDMGLPQSIEIFSTKQSKHSINNVSVGVGTSPPQTTTATERNISINGSKTSTAAASVSAAATTTATMNTITTTTTRSTSTDTKDSTLIELLKRGTRIAITSKQPSNAPLGGVSRPIVTNNSNNNNNQRPLITSSDVQVLNNNKTKLSNANFTTSNGISITEAAPLSLAISQNASNANEIFTVTYAGDNSNLFGDGEVFNVNEAEMLLQTVDTMQLLNDSGQDNLLKLSEPSDRLVMTENSVRLGEGFSNTLNGQHRQILPNFQQFHSKDLTNNCINPSINGRLNSLSLPLNVKSQYGSLNSPPHSPLAYPTPPSSHENVTQTSPYIEDNQHFSDSANVFFSETLITPSTSGCSELDSDNILKLKSVLENNNFDNHIKVEDLLNDANTDTECDLREFAEANLSFLDEDQDQFLNDSDNATSPLTESFFNADIGSAEEVKEVLDEVLSDNQMSLQCENQSENIIDLYYLPGLSLQSQMMPNSEDPLLSSSPRDFGQQKMNHQTSGISSIPPQSSNIITNGSSNVYHSNNAVPLHALQQQQQQHPQNIVQFAINQQQQQQQQISNDSSQVIVTVPDNGCTGAASFMQYNLPNLPQVQIHQNQQQSQQQQQQQQQYIDTKNLPPTMTATATNCGGGGSNNNRSTMATLNEALMQPLIYTGTTERLDMKLELTQNRHLGLNIQPQQQQQQQPQQQPLRGTDYKLQIHSNLNSVASNNQPTATYNSNANNHSTPNTMSVITTTLQPLSNQTNSILKRRLKGYNSSDVTSTSSHSKFQVLSPYRSKLRKPSRTHYTPAPILNPERKGQGLYYNILKDKCSSLLGFDTFNDDFDDAVGLVDFSDESKVNLGSAYQASLPALRERTLATGVEEPVGAELMWDPEVQKDEKILLRFIDLIKSSAVPLGCHTEEVALQTLMISKGNTSSAVLTLLQTQSNSFQMTWTALELEMFLKGLEKYGKEFCKISKELGSKTTGECVQMYYFWKKLCVDYKISHLKTETPPNNHVSEAKPYVCEQPDCSASFSSKAALHGHTRIHTYGRNSHNHSATNPNANITTLPGSTSTPAGACNANTQASHSASLPKDSNATTSKDNSDFPCKVCGKVFNKIKSRSAHMKTHRVADNDTTTTTATTTAIVQTVQIMNQIQIHQPQQLQQLQQQQQQQQQQQQQPAIRQEHNNNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00384800;
90% Identity: iTF_01114953; iTF_00384515; iTF_00384800; iTF_01114512; iTF_01114150;
80% Identity: iTF_01114953;