Basic Information

Insect: Crataerina pallida
Gene Symbol: TRERF1
Assembly: GCA_949710015.1
Location: OX453290.1:26880104-26889939[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 4.9e-05 0.0033 17.8 0.3 2 23 393 414 392 414 0.97

2 6 1.6e-06 0.00011 22.5 1.3 1 23 420 442 420 442 0.99

3 6 0.00012 0.0085 16.5 2.6 1 23 448 472 448 473 0.95

4 6 0.00042 0.029 14.8 1.3 2 23 711 732 710 732 0.97

5 6 0.0017 0.12 12.9 0.2 1 23 1843 1867 1843 1867 0.97

6 6 9.8e-05 0.0066 16.8 0.8 1 23 1926 1948 1926 1948 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	4.9e-05	0.0033	17.8	0.3	2	23	393	414	392	414	0.97
2	6	1.6e-06	0.00011	22.5	1.3	1	23	420	442	420	442	0.99
3	6	0.00012	0.0085	16.5	2.6	1	23	448	472	448	473	0.95
4	6	0.00042	0.029	14.8	1.3	2	23	711	732	710	732	0.97
5	6	0.0017	0.12	12.9	0.2	1	23	1843	1867	1843	1867	0.97
6	6	9.8e-05	0.0066	16.8	0.8	1	23	1926	1948	1926	1948	0.98

Sequence Information

Coding Sequence: ATGTGCAGCGCTTCAGTGGGTACTGAAGGTTCGGTAACATTGCAACTACGAGATGCAAATTCAACTTCGTCATTTTCTCCATCATCCTCCTCCGACTCGAATCACTCATTAACCGCTGCCCGTATAGCTTCCCACACTGACGAAACCAGTTTAGAAAATGCTTTAACAATTGGTTATCCGGATCCGGAAATGCTTGCAGATGTTTTGGGTACCCTACAAACGGCAGctttaaaaaataccaacattaatttttttaatagtggTAATGTtaacaagaacaataataacaacaataataacattaataaacaaataacaacaacaaatgccacaacaacaatacaacttAGTGAAACGGACAAACGTGATAATAATCCCAATCCCGCTACTAACCCCAACAATGATTCCAATCCAAATAACAATCAACATTACCAAATTGTGAATGTTAGCGATACTGGTAACGGTAGTAAAAATTGTcccaataatataaaaaatcgtttaaCTACAAGTACAAGTACAAGTACAAGTACAAATACAACTACAATAAATCGCCGTAACAACATAGTGACGACAGCAAATGTGTCCAGTGGTAATTATCAAGCGTCAAATAGAGAAGCATCCAAGCCATCTAATATATTGGCAACGACCACTGTACAAACTGTTTCCACCTCTACAAATACAACCAACAAAACCAACAGTTACATTAAAAATTGCCTAATACGTAGCAGTAGTTGCAGTAGCACAGCCAACATAACATCATTGGCTCAAATAATGAGCAATAGCAATACAACCAGCACAAGCATTGGTTCAactaacaacaataccaataacaacaataataacaataccaacaacaacaataacattaacaacaGTAATTGTAGCAATAGCAGCAGTAGTGCGAACGGCAATAATGGTACACCGCAGCCCCTACAGAGTAGCAATCCTTTGACGTGCAATAACAGCAATTGCAGCAGTACCAGTAACTTCAGTTCCAACAGCAATGACAGTTGCTTCAGTGTAAATAGCAATAGTAATAGTAGTAGCGGCAACATTACTGTGCGTAGCGTCTCTGTGCATGGCAATCGTAAAGTTCCTGGTGCTCTAGCAAATCCGcccaaaatatttaagaaaagcCGCTCAAAGCTATCATCCCCAAGTCGGCACGGTCCCCAACAGTGTCAGATTTGTAATAAGATTTTTGGTAATGCATCAGCTTTGGCTAAACATAAACTGACGCACAGTGACGAACGGAAATACGTTTGTGCGATGTGCTCGAAAGCATTTAAACGACAAGATCATCTAAACGGCCATATGATGACgcatagaaataaaaaaccatatgaATGTAAAGCGGAGGGGTGTGGGAAATCATACTGTGATGCTCGTTCATTGAGGCGGCACACAGAAAACCATCATGCTGGCATAATAACTCCACAAAATCAAAGCCTCAACTCCGTGGCGGCAATCAATGGCAGATCATCAGCCAGTTTAAGTTTATCACCAGCCACAGCAAGCGGAGATGCCAACTCCCCAGATGGTGGGGCCACTTGTTTGGGCACTTATATTTCTAATGGCGGCACTGTAGTAGATGCCTCCACCGGTTTAGCTTTAACTGAGGAGGAACTCAAAGCTTTAAATGTCCCTTTAAAAACTGAAGTCACTTTATTATCACCCACCTCAACTACTGCCACTGTGTTATCAACAGGTGGACGAACAACATCACCTGCTTCGACTACAATTACTTTAACCGACAACGGTGGTAACTCCGATGGGGAAGGCTTAACACGCGAACAATTAGACTTGATTAGTAAAATTATGCgtcaaacaaaacaaacaacggCGCAAGTAACTGTTTCGTCGCATTCCAGTTCCCAATCGTATAAAATTGATACATCATCAATTCAGGCGCAGACGCAAAACTCCAGACCACGAACCTGGAACATGCAATTGTTGAATACCACACAAAATTTAGCGATTACGGTGGATGAGGTGACTAATGATATTAAGTCGCATAAAGTTGGTGCGATTCAAACCGATGTGAATGATGCAGAtgtaaaaatcgatttaacaggGGGTGTCACATCAACCAATATGTTGAATATTGTGAAGGTCGATCAGAAGCCGGTAGAGTGTAATTTATGTCATCGGAAATTTAAGAATACGCCAGCACTGAACGGTCATATGCGTTTGCATGgcggatattttaaaaaagatcCCGACTCGAAGAAGAGCGAAAAGAAGGAAAACAATGGACCACCATTACAGACAGCTAGTTTTGGGGTCCGAGCCTTGattgaagaaaaaattattagtaaACGTAGTAGGGATTTGAACAAGGGTGCCTTTGCTGTACCTGCCCCACCCACAAGTAATTTATCCAATAATCCGAGCCTGCGCAGATCCGTTAATGATTTGGAGAGTTTTATTAATTCGAAAACTCAAGCAAATCTTACCACATCTACATTAACCAATACAACGGGCACCATGCTACCTGCTAATGTGACCATAAAGAATAGCTCACGAACGCTATTAAATGCCCAAGACATGGGTTTACCACAAAGCATTGAAATTTTCAGTACTAAACAGTCTAAACATTCAATAAATAATGTAAGCGTTGGAGTGGGAACAAGTCCACCACAGACAACCACTGCTATGGAACGGAATATATCAACAAATTGCCCGAAAACGAGTACAGCAGCTGCATCTGCATCTGcggcagcaacaacaacagccacaATGAACGCAATAACAACTACGACAACCCGAAGTACATCCACCGATACGAAAGATTCAACATTAATTGAGTTATTAAAACGTGGTACTCGCATTGCGATCACCTCAAAACAGCCATCCAATGCCCCGTTGGGTGGTGTAAGTCGTCCCATAGTCACcaataatagcaataataataataaccaaaCACCTCTAATAACATCGTCAGATGTTCAAGTGTTGAATAATAATGAAACGAAATTGTCGAATGCGAACTTTACCGCATCAAATGGTATATCGATTACCGAAGCTGCTCCCCTATCCTTGGCCATATCACAAAATGCGACCAATGCAAGTGAGATATTTACTGTTACATATGCTGGTGACAATTCCAACTTGTTTGGTGATGGTGAAGTGTTTAATGTGAATGAAGCTGAAATGCTTCTGCAAACAGTAGACACAATGCAACTATTGAACGATTCCGGTCAGGATAATCTTTTAAAACTCTCAGAACCCTCTGACCGTTCAGTTATGACAGAAAATTCTGTTAGACTTGGAGAAGGTTTTTCAAACACTTTAAATGGACAGCATAGACAAATTCTTCCAAATTTTCAGCAATTTCATTCCAAAGATCTAACAAACAATTGCATAAATCCCTCTGTTAACGGCCGCTTAAACTCTCTGTCTATTCCATTGAATGTTAAATCGCAATACGGCTCGTTAAATTCTCCACCACATTCTCCTCTGGCATATCCTACACCACCCTCCAGTCACGAGAATGTCACGCAAACTTCTCCCTACATTGAAGACAATCAACATTTCAGTGATTCGGCGAATGTATTCTTTAGCGAGACATTGATAACACCCTCAGCATCGGGTTGCAGTGACTTGGATAACGATAAcattatgaaattgaaaagtgTTTTGGAAGACAATAACTTCGATAACCACATAAAAGTGGAAGATTTACTTAATGATGCCAATGCGGACACTGAGTGTGATTTGAGAGAATTTGCTGAAGCGAATCTGTCATTTTTAGATGAAGATCAAGATCAATTTTTAAACGATTCGGATAATGCTACATCCCCTTTGACGGAGTCCTTTTTTAATGCCGATATTGGTTCCGCAGAGGAGGTGAAAGAGGTTCTTCATGAAGTTTTGTCTGACAATCAAATGAGTTTACAATGCGAGAATCAGTCCGAGAATATTATCGACTTGTACTACTTGCCTGGTTTGAGTTTGCAGTCACAAATGATGCCCAATTCAGAGGATCCCTTGTTGTCCTCATCTCCACGCGATTTTGGTCAGCAGAAAATGAATCATCAAACCTCTGGTATAAGTAGCATTCCACCACAAAGCTCGAATATTATTACGAACGGAAGTTCGAATGTATATCACAGTAACAATGCAGTCCCATTGCAtgcattacaacaacaacaacagcaacatcccCAGAATATAGTACAATTTGCAATAaatcagcaacagcaacaccaAATATCTACCGACAGTGGTCAGGTTATAGTGACTGTACCAGATAATGGGTGTACTGGTGCAGCTTCATTCATGCAGTacaatttaccaaatttaCCGCAAGTacaaattcatcaaaatcagcaacaatcacaacaacaacaacaatatatagatACTAAAAACCTGCCGCCTACAATGACCGCCACCGCAACCAATTGTGGTGGTGGGGGTAGCAACAATAATCGAAGTACAATGGCAACTTTAAATGAGGCCTTGATGCAGCCGCTCATATATACAGGAACCACCGAGAGATTAGATATGACATTAGAACTAACACAAAACCGCCACCTTGGATTAAATATACAaccacagcaacaacaacagcagcagcagcaaccaTTAAGAAGCACCGAATATAAACTTCAAAtacattcaaatttaaattcgGTTGCCTCTAATAATCAACCCACTGCGACGTACAATTCCAACGCCAACAATCATAGTACACCGAACACAATGTCCGTAATTACAACCACATTACAACCTTTATCCAATCAAACCAATTCCATTTTGAAAAGACGCTTAAAAGGCTATAATTTCTCAGACGTAACTTCAACTTCTAACCActccaaatttcaagttctcTCACCCTATCGCTCGAAGCTACGTAAGCCCTCTCGAACTCATTACACTCCAGCCCCCATTCTGAATCCCGAACGTAAAGGACAAGGTTTGTACTACAACATATTGAAAGATAAATGTTCAAGCCTTTTGGGATTCGATACTTTTAATGATGATTTTGATGATGCCGTTGGTCTGGTAGATTTTTCGGATGAATCTAAAGTGAATTTAGGTTCAGCCTATCAGGCTTCTTTGCCCGCTTTGCGAGAAAGAACATTAGCAACTGGTGTTGAAGAACCGGTAGGTGCCGAACTTATGTGGGATCCCGAGGTGCAGATGGATGAAAAGATACTCTTACGCTTCATTGACCTTATCAAATCATCTGCTGTACCTTTGGGCTGCCATACCGAAGAAGTAGCTTTACAAACATTGATGATATCTAAGGGCAACACATCATCGGCTGTCTTAACTCTCTTACAAACCCAATCGAATTCATTCCAAATGACTTGGACCGCCCTAGAATTGGAAATATTTCTGAAAGGCTTGGAAAAGTATGGCaaagaattttgtaaaatatccaAAGAACTGGGCTCAAAAACCACGGGAGAATGTATTCAAATGTATTATTTCTGGAAGAAACTGTGTGTGGATTATAAGATAAGCCATCTGAAAACCGAAACACCACCAAATAATCACGTCAGTGAAGCGAAACCCTATGTATGCGAACAGCCCGACTGTTCAGCGAGCTTTTCATCAAAGGCCGCTCTGCATGGTCACACTCGCATACATACCTATGGCCGCAACAGCCATAACCATAGTGCAACTAATCCAAATGCTAACATCACCACCCTACCCGGCTCAACCAGTACACCAGCTGGTGCATGCAATGCCAATACGCAGGCTAGCCACTCAACCAGCTTACCCAAAGATTCCAATGCTACCACTTCCAAAGATAACAGCGATTTCCCCTGCAAGGTGTGCGGCAAagtattcaataaaataaaaagtcgTAGCGCTCATATGAAGACACACCGAGtgcaacaattacaacaacaacaacaccatcaacagcaacagcaacaacaacaacaacaaccagcCATACGTCAagaacataataataattcataa
Protein Sequence: MCSASVGTEGSVTLQLRDANSTSSFSPSSSSDSNHSLTAARIASHTDETSLENALTIGYPDPEMLADVLGTLQTAALKNTNINFFNSGNVNKNNNNNNNNINKQITTTNATTTIQLSETDKRDNNPNPATNPNNDSNPNNNQHYQIVNVSDTGNGSKNCPNNIKNRLTTSTSTSTSTNTTTINRRNNIVTTANVSSGNYQASNREASKPSNILATTTVQTVSTSTNTTNKTNSYIKNCLIRSSSCSSTANITSLAQIMSNSNTTSTSIGSTNNNTNNNNNNNTNNNNNINNSNCSNSSSSANGNNGTPQPLQSSNPLTCNNSNCSSTSNFSSNSNDSCFSVNSNSNSSSGNITVRSVSVHGNRKVPGALANPPKIFKKSRSKLSSPSRHGPQQCQICNKIFGNASALAKHKLTHSDERKYVCAMCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGIITPQNQSLNSVAAINGRSSASLSLSPATASGDANSPDGGATCLGTYISNGGTVVDASTGLALTEEELKALNVPLKTEVTLLSPTSTTATVLSTGGRTTSPASTTITLTDNGGNSDGEGLTREQLDLISKIMRQTKQTTAQVTVSSHSSSQSYKIDTSSIQAQTQNSRPRTWNMQLLNTTQNLAITVDEVTNDIKSHKVGAIQTDVNDADVKIDLTGGVTSTNMLNIVKVDQKPVECNLCHRKFKNTPALNGHMRLHGGYFKKDPDSKKSEKKENNGPPLQTASFGVRALIEEKIISKRSRDLNKGAFAVPAPPTSNLSNNPSLRRSVNDLESFINSKTQANLTTSTLTNTTGTMLPANVTIKNSSRTLLNAQDMGLPQSIEIFSTKQSKHSINNVSVGVGTSPPQTTTAMERNISTNCPKTSTAAASASAAATTTATMNAITTTTTRSTSTDTKDSTLIELLKRGTRIAITSKQPSNAPLGGVSRPIVTNNSNNNNNQTPLITSSDVQVLNNNETKLSNANFTASNGISITEAAPLSLAISQNATNASEIFTVTYAGDNSNLFGDGEVFNVNEAEMLLQTVDTMQLLNDSGQDNLLKLSEPSDRSVMTENSVRLGEGFSNTLNGQHRQILPNFQQFHSKDLTNNCINPSVNGRLNSLSIPLNVKSQYGSLNSPPHSPLAYPTPPSSHENVTQTSPYIEDNQHFSDSANVFFSETLITPSASGCSDLDNDNIMKLKSVLEDNNFDNHIKVEDLLNDANADTECDLREFAEANLSFLDEDQDQFLNDSDNATSPLTESFFNADIGSAEEVKEVLHEVLSDNQMSLQCENQSENIIDLYYLPGLSLQSQMMPNSEDPLLSSSPRDFGQQKMNHQTSGISSIPPQSSNIITNGSSNVYHSNNAVPLHALQQQQQQHPQNIVQFAINQQQQHQISTDSGQVIVTVPDNGCTGAASFMQYNLPNLPQVQIHQNQQQSQQQQQYIDTKNLPPTMTATATNCGGGGSNNNRSTMATLNEALMQPLIYTGTTERLDMTLELTQNRHLGLNIQPQQQQQQQQQPLRSTEYKLQIHSNLNSVASNNQPTATYNSNANNHSTPNTMSVITTTLQPLSNQTNSILKRRLKGYNFSDVTSTSNHSKFQVLSPYRSKLRKPSRTHYTPAPILNPERKGQGLYYNILKDKCSSLLGFDTFNDDFDDAVGLVDFSDESKVNLGSAYQASLPALRERTLATGVEEPVGAELMWDPEVQMDEKILLRFIDLIKSSAVPLGCHTEEVALQTLMISKGNTSSAVLTLLQTQSNSFQMTWTALELEIFLKGLEKYGKEFCKISKELGSKTTGECIQMYYFWKKLCVDYKISHLKTETPPNNHVSEAKPYVCEQPDCSASFSSKAALHGHTRIHTYGRNSHNHSATNPNANITTLPGSTSTPAGACNANTQASHSTSLPKDSNATTSKDNSDFPCKVCGKVFNKIKSRSAHMKTHRVQQLQQQQHHQQQQQQQQQQPAIRQEHNNNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00384515; iTF_01115243; iTF_01114953; iTF_01114512; iTF_01114150;
90% Identity: iTF_01115243;
80% Identity: iTF_00384515;