Basic Information

Insect: Ornithomya fringillina
Gene Symbol: RREB1
Assembly: GCA_963978525.1
Location: OZ021693.1:5435256-5441313[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0069 0.51 11.0 0.6 1 21 283 303 283 305 0.96

2 12 0.00034 0.025 15.1 0.2 1 23 315 337 315 337 0.98

3 12 2.4e-05 0.0018 18.7 7.5 1 23 343 365 343 365 0.98

4 12 0.04 3 8.6 1.7 2 19 614 631 614 631 0.98

5 12 0.0085 0.63 10.7 0.1 1 23 793 815 793 815 0.97

6 12 0.00042 0.031 14.8 1.7 1 23 825 847 825 847 0.99

7 12 0.00084 0.062 13.9 2.0 1 23 853 876 853 876 0.97

8 12 0.003 0.22 12.1 2.0 1 23 1238 1261 1238 1261 0.95

9 12 8.8e-05 0.0065 17.0 0.3 2 23 1575 1596 1574 1596 0.97

10 12 0.15 11 6.8 6.3 1 23 1602 1625 1602 1625 0.97

11 12 0.086 6.4 7.5 1.1 3 23 1813 1833 1812 1833 0.91

12 12 0.0014 0.1 13.2 4.8 1 23 1839 1861 1839 1861 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0069	0.51	11.0	0.6	1	21	283	303	283	305	0.96
2	12	0.00034	0.025	15.1	0.2	1	23	315	337	315	337	0.98
3	12	2.4e-05	0.0018	18.7	7.5	1	23	343	365	343	365	0.98
4	12	0.04	3	8.6	1.7	2	19	614	631	614	631	0.98
5	12	0.0085	0.63	10.7	0.1	1	23	793	815	793	815	0.97
6	12	0.00042	0.031	14.8	1.7	1	23	825	847	825	847	0.99
7	12	0.00084	0.062	13.9	2.0	1	23	853	876	853	876	0.97
8	12	0.003	0.22	12.1	2.0	1	23	1238	1261	1238	1261	0.95
9	12	8.8e-05	0.0065	17.0	0.3	2	23	1575	1596	1574	1596	0.97
10	12	0.15	11	6.8	6.3	1	23	1602	1625	1602	1625	0.97
11	12	0.086	6.4	7.5	1.1	3	23	1813	1833	1812	1833	0.91
12	12	0.0014	0.1	13.2	4.8	1	23	1839	1861	1839	1861	0.99

Sequence Information

Coding Sequence: ATGTTGGCCACacaaacagcaataacaacaacaagtaacaCCGTGACCGATACATTAAACAGCAGTAACGAATGTTCAACcatacaacagcagcagcagcagcaacaacaacaacaacaacaacagccattacatctatatagaaataaaaatgggGAAAACAGCACAACGAACACTAATAACAGCACACATATCAAATTGGAACGACGGGATTCTTCCACTTCCGAATCTTCGCTGGAACATTTGGATTTAGGTCGTACAccgaaaaaatttaacaaagcCACCACATCCACACCATTTGTGCCGAATGAtaaaagtacaacaacaacaacaaagccaACAATTACAAATGATTCAATTCAACCATTACAAACCGTTCATCTGCAGCAGCGTTTACAAGACTCAGATGATGGTAATGATTACGATGATGAAGAATCATCGGATGAGAAACATACAAGAAACGTACACACCTCCTCAGTAATAACACAAAACCTACAACAATCTGAACCACAACGCTTAACACACTATAAACGTCGTTATTGTGGCCGAAATCTGTTAGATAAACGTACCAGCATACAGCTGGAGTATAATCCAGATAATCCGAATTCGTTGCGTAAAAAGTTTCGTTTTAATCGCAGCTCATCGGAGAATGTCACTTGCTCAAATGAATCCGGCTTTGTAGAGGGCAGTCACAGCAGCCTGTTGATCAATAACTCATCCATAACAAACAGTCACAGTCACAGTAAATCGAATACATCCTCGGCTGCCTCCACACCGCCCTATAATCAACAGAATGGTGGCATTTCCAGTCCCGAATCGGGTGTGGGCGAACGTGAGGATATGAAATATGTGTGTCCGATTTGTGAAGTGGTGTCCCCCACCCCCCATGAGTTTACCAATCACATACGTTGTCACAATTATGCTTCAGGCGATACCGAAAATTTCACTTGTCGCATTTGCTCAAAGGTGTTATCGTCGGCTTCCTCTTTGGATCGTCATGTGCTGGTGCATACAGGAGAGCGACCATTCAACTGTAAATACTGTCATTTAACTTTTACCACCAACGGCAACATGCATCGTCACATGCGCACTCACAAACAGCATCAGCATACACATCATCGCCGTAACTCGAACGGAACAAAGATTattagcagcagcaacaacaataacaaccataataataataaaaatggtgCAGCTGCTGTTACTGGTGCTGCAGCTTCTATTATTGCTGTCACTACTCAAAATAACATTAATGTGAATGCTGCTGGTATTCCGAATAACCCTTCTACCGCTACGCTACCACCATATGCTACAGCAGCAAGTAATGGACCGTTACAGGAAGGCGTTAAATCATCAGCAATCAATAATTACAATACCGGCAGTATTGATGCCGTTGATCATTACTCAAGCAACGCTTTGTCAACAGGTGCCCACGGCAATGGCCAGCGTTTGAATGGTTTAACAAATTTCGAAAGTTACGAAAGTGATGGCGGCTGTTCGTCGGACAATTCTACAGCGAACAGTCAATTGTCgcaaaataataatcataataatgacagcaacaacaacaacaatatctatAACAATGACATCAAattgaacaataacaactttaAACGTAAATTGTTAGACGATCATCGTGATTTCGATGACAGGACGATTGAATTAAAACGGTGCTTAAATAGCGACATAATTAATGGTTCTGTTGTTATGCCGGAGCCGCCAATACCTAATGATACGTGCGGACTGGTGTGTCCCGCATGCAACGATAATGATTTTTCCAACATGTTAGATTTAGACAATCATATGGATTCGAAACATCCCGACATCCCAGccaaatgtaaatattgtgaagTAATATTTCGTACCCATCATCAGCTCAACATACATCCCTGTACCGATGAATTGACACATCGTTTGGCATATGTCAATAAAATGAATGTTACAAGAAGTCTGCCTTTGGGAGAACATTGCTCTAATGATACAGCCTTTGCAAAAGATGATCATGCTGCCGGAGATAGTCAGTTGATGGAAGAAAACGAAAATCAAAGAAAAGAATTCTTCCGACAATTTTACATGAATAAAGCCATAACTGAGGCCAACACTCAATACCAAAAAGTACATGAGCAATCATCACAGCCGGATGCTGCCGAAGATGATGTTAAATCGGAGCCATCCGCTCATGATTCCAAAGATTTGGCAGATATTCAATCAATTTTGAATATGACATCATCGTCCAGTACTTCTAATTTTCTGAAGAACTTCGAACAAAATGTCAATACACCCTCGTCTCAGTGCAGTTATGATAAGGATGAAGAGGAAGCTCAAGATGCCTTTACGTCCGAATTTCGTAAAATGAAGTTGCGTGGAGAGTTCCCTTGCAAACTCTGTACTGCAGTGTTTCCAAATTTAAGAGCCTTAAAGGGCCACAATCGGGTGCACTTGAGTGAGGCTGGCCTGTCCGGTCCATTTCGCTGTAACATGTGTCCATATTCCAATTGCGATAAAGCGGCTTTAGTTCGCCACATGCGTACACATAACGGGGATCGTCCATACGAGTGTGCCGTTTGCAATTATGCTTTCACTACCAAGGCCAATTGTGAGCGACACTTACGCAATCGTCATGCTAAAACAACACGGGAAGAAGTGAAACGTGCCATTATCTATCATCCCTCCGAGGACAGCTCTTGTGATGATCCCACAAAGAAACTGCATATGTTCTCTTCGCCCGAATgcgatgatgataatgaactGATCATGTGTCATACGATCCAACCGAAGGATCGCTCCACTCCGGTATCTCATTTAAAAGAAATGCTTACCGCGGGTGAAAGTCTTTCAGCTAAGCCGGTAAAGATTCAAGTGAAAAGTTTAGAACAATTATTGGACAAATCTTCTGCTTATCAGGAGAGTTATGAACAAGAAAAGAACAacatcagcagcaacaatgAAAGCAACGGTCCTATCGATATGAGTATGGATGCTTTGGACCTTAGCAAGAAATCAACAACCAACCAGCAAAAGAAGCACGCTGGCCAAGGTAATCAAGCAGCAGCAAACACCTTTAACAGGCCTGCTCAAGAGCCAAAACCAGTTTACGCCGAAAATGAACCCATTAACCTTGAGAACCCCAAATATGAAGTGTCTGCtttagaaaaacaacaacaacaattgtttttggCTCAACAACAACTGCTCACCAATCCCACACAATACCTACAACAACTCTATCGCAATCTAATGTTGCCACAATTGAGTCCATTCTTCTTGCCCAATTCGTTTATGCCCAACAGCAACTTGGCGGAACTGCAGAAATTTGCACCATTTTTAAGTCGAATGTTTGGCACACCCACGGCCATCACCGCACCCTCAACTTCTGCTTTAAACGAAGATATAGAAAAAGCATCACTTGCCAATTCATCGAATGCCATGAACTCCCTGCTGCCTCAGATCAGTCCTCTAATGTGTTCCGAAAAATGCAGCCCAAATTCATTGAACTCATTGCCATCTCCCAAGGATATGCAAGCACCGAACCCAGCAACGCTCAACATACCTTTACAGTCACTACCACTACCACTTCCACCACCACCTCCTCCCCCTCCCCATCTAACATCAACTATGCTCTCCAATGCTCCGGTAAAAATGGTCCTCAAAAATGGCGTCTTTATGCCCAAACAGAAGCAACGACGCTATCGTACCGAACGACCATTTGCTTGTGAACATTGTTCAGCTCGCTTCACATTACGCTCCAACATGGAACGTCATGTTAAACAGCAGCATCCGCAATACTACGCTCAACGTCAACGTACCGGCCATCATGTGATGAGAGGTCGCGGTGCCAGCAATGCTGGAAATCTAAACAGTATTACGCATCTGCAAGCGGCCTTTGCTCACAATGGCTCCCCGGCGGGTCTCACTTCATCATCACCCATCTCCGATCAAGTGAAGTACGCCATATTAGCACAACAATTAAAAGCACGCAAAGAAACGGATCTATTGCATCAAGCTTTGTCGCATGGCTCCGGTAATGTCAACAACAATCACATGTTCCATATAAGTCCATCGAATGGGCCCAATGGGCTTAACTTTATAAACTCCAACACTAGCAATACTCCTAATGGTTCCATGGAAGATGATGAAGATAAGTTAATAATTGATGAAGATGGGGAGGATATTATAGACGATGTCCCCGATAAAAATGACGGAACTGAAAATAGAGATGAAAATCCCAGCGAAGATAATATAACTTTAGAGATTAATGAAGAGAATTATGGCAAAACGAAAGATTCGGAAAATCATGCTGAGAATGTAACTAAATCGATCCTGGAACAAGCCATAAAGGCGGGTCACGGTCATGGCTGTGTAAGTAAAGCGGAATTAAAGAGTGTTCCAGCTCCCAATACCATGAATTCGATGATAGCACAAGCACCAGCTGTTGGGAAGTTTCTTAAAGAAGTAGCCAGCTCTCCGTTTAAGGACGAATCTCAAGATTTAGTTTCCGTTTCCAAATTGGTGGACAACGCTACCAGCAACTCGGTCTCATTTAACAATTACTTTCGTCCCAGTGACCTAACTAATCAAATGGAACATAGCGATGAAGAGGGTTTGGTTGCTTCGGGCAGTGCCAGCGAGAGTAACAATTCGGGAGCAGAAGATACAGCTGTAGTTGCAGTACAACCGAAAAAGAAATCAGCCTACAGCCTGGCACCCAACCGGGTCTCGTGTCCTTACTGCCAGCGCATGTTCCCTTGGTCCAGTTCCCTAAGGCGTCACATTCTCACGCATACCGGCCAGAAGCCCTTCAAATGTTCACATTGCCCTCTTTTATTCACCACAAAGAGTAACTGCGATCGTCATCTATTACGCAAACATGGCAACATTGAATCCGCCACCTCGGTATATGTGCCCACTGAAGATGTTACCGAGCCAATACCACCGCCAAAGTCTGTTgaggaaattgaaaaaatgcaaCGACAACGAGACGAAGAAGAGCGGAAACGCAAAGCTGATAAAGTACGAGAGCGAGAGGAGAGAGAACGTCTGGAGAAAGAGCAGCAACgggaaaaacaacaaacacaagaacaagagcagcaacaacaacaacagcaacagcatgacTTTTTCAAACAATTGGCTGCAGCTCAAATGCAACATTATTCGCACAAATCGGAAACCAGTCAAGTGTCATCTGCTGATCTGCCATTCAAGTGCCATTTATGCGAAAGCTCGTTTGCCGAACGTTTACAGTGTTTagaacatataaaatgtatgcacGCACAAGACTTTGCTTTACTGTTGTCCAAGGGAGCCATTGATAGTGATGCCGAAACGTCACAGTTAACCTCCAACGAAGAGGAAGAGCGCAATGGACGTGGCCATGAAGATGGCTTAAAACTGGGCAAATATCCCGACTATAGTAATCGCAAGGTTATATGCGCTTTTTGTATGCGTCGCTTTTGGTCAACCGAAGATTTGCGCCGTCACATGCGTACGCATTCGGGCGAACGGCCATTTCAATGCGAAATCTGCTTAAGGAAGTTCACCCTGAAGCATAGCATGCTGCGTCATATGAAAAAACATAACGGTTTAAGTGCCAGTGATGATTGTCAAGCGGGTGGAGATTTCTCAACTAACGCCAATAGCGGTTCCGATTATTCTGATGACGAACAAACGCCTACAATACAACCGAACACACCAACAGCCGCTAACAATTCCTTAATGTTAACGCCCAGCATGAATGCTTCGTTTATAGGTAAGAAAATTCAAGAGTTATTGAATAAAGCCAATGAATGGCGATCGAGTAATCTGAACGGTTTAGATGagcaaaaaagaaatattaccGAAGAAAGCAACAATATGCAACATACAGACTTAATTGGTAACTTGTTGGGTATAAGCGATCagaatatgttaaataagttGTTGTCATCACCGGACGAGGCTGCCAAATTATTAGGTGTCGATAAGTGA
Protein Sequence: MLATQTAITTTSNTVTDTLNSSNECSTIQQQQQQQQQQQQQQPLHLYRNKNGENSTTNTNNSTHIKLERRDSSTSESSLEHLDLGRTPKKFNKATTSTPFVPNDKSTTTTTKPTITNDSIQPLQTVHLQQRLQDSDDGNDYDDEESSDEKHTRNVHTSSVITQNLQQSEPQRLTHYKRRYCGRNLLDKRTSIQLEYNPDNPNSLRKKFRFNRSSSENVTCSNESGFVEGSHSSLLINNSSITNSHSHSKSNTSSAASTPPYNQQNGGISSPESGVGEREDMKYVCPICEVVSPTPHEFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKIISSSNNNNNHNNNKNGAAAVTGAAASIIAVTTQNNINVNAAGIPNNPSTATLPPYATAASNGPLQEGVKSSAINNYNTGSIDAVDHYSSNALSTGAHGNGQRLNGLTNFESYESDGGCSSDNSTANSQLSQNNNHNNDSNNNNNIYNNDIKLNNNNFKRKLLDDHRDFDDRTIELKRCLNSDIINGSVVMPEPPIPNDTCGLVCPACNDNDFSNMLDLDNHMDSKHPDIPAKCKYCEVIFRTHHQLNIHPCTDELTHRLAYVNKMNVTRSLPLGEHCSNDTAFAKDDHAAGDSQLMEENENQRKEFFRQFYMNKAITEANTQYQKVHEQSSQPDAAEDDVKSEPSAHDSKDLADIQSILNMTSSSSTSNFLKNFEQNVNTPSSQCSYDKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRVHLSEAGLSGPFRCNMCPYSNCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCDDPTKKLHMFSSPECDDDNELIMCHTIQPKDRSTPVSHLKEMLTAGESLSAKPVKIQVKSLEQLLDKSSAYQESYEQEKNNISSNNESNGPIDMSMDALDLSKKSTTNQQKKHAGQGNQAAANTFNRPAQEPKPVYAENEPINLENPKYEVSALEKQQQQLFLAQQQLLTNPTQYLQQLYRNLMLPQLSPFFLPNSFMPNSNLAELQKFAPFLSRMFGTPTAITAPSTSALNEDIEKASLANSSNAMNSLLPQISPLMCSEKCSPNSLNSLPSPKDMQAPNPATLNIPLQSLPLPLPPPPPPPPHLTSTMLSNAPVKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRQRTGHHVMRGRGASNAGNLNSITHLQAAFAHNGSPAGLTSSSPISDQVKYAILAQQLKARKETDLLHQALSHGSGNVNNNHMFHISPSNGPNGLNFINSNTSNTPNGSMEDDEDKLIIDEDGEDIIDDVPDKNDGTENRDENPSEDNITLEINEENYGKTKDSENHAENVTKSILEQAIKAGHGHGCVSKAELKSVPAPNTMNSMIAQAPAVGKFLKEVASSPFKDESQDLVSVSKLVDNATSNSVSFNNYFRPSDLTNQMEHSDEEGLVASGSASESNNSGAEDTAVVAVQPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNIESATSVYVPTEDVTEPIPPPKSVEEIEKMQRQRDEEERKRKADKVREREERERLEKEQQREKQQTQEQEQQQQQQQQHDFFKQLAAAQMQHYSHKSETSQVSSADLPFKCHLCESSFAERLQCLEHIKCMHAQDFALLLSKGAIDSDAETSQLTSNEEEERNGRGHEDGLKLGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGLSASDDCQAGGDFSTNANSGSDYSDDEQTPTIQPNTPTAANNSLMLTPSMNASFIGKKIQELLNKANEWRSSNLNGLDEQKRNITEESNNMQHTDLIGNLLGISDQNMLNKLLSSPDEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01114504; iTF_00384784;
90% Identity: iTF_01114504;
80% Identity: -