Basic Information

Insect: Ornithomya fringillina
Gene Symbol: -
Assembly: GCA_963978525.1
Location: OZ021691.1:995396-999824[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00015 0.011 16.2 1.3 1 23 201 223 201 223 0.95

2 15 0.57 42 5.0 2.5 3 23 231 251 229 251 0.95

3 15 0.00014 0.01 16.3 1.3 1 23 392 414 392 414 0.98

4 15 0.00096 0.071 13.7 0.4 1 23 420 442 420 442 0.99

5 15 0.00063 0.046 14.3 3.3 1 23 478 500 478 500 0.97

6 15 0.0082 0.61 10.8 0.3 1 23 526 548 526 548 0.94

7 15 0.00052 0.039 14.5 0.2 1 23 554 577 554 577 0.97

8 15 0.31 23 5.8 0.3 5 19 588 602 585 603 0.91

9 15 0.00037 0.027 15.0 6.8 1 23 612 634 612 634 0.97

10 15 0.037 2.8 8.7 0.6 2 23 640 661 639 661 0.97

11 15 9.6e-06 0.00071 20.0 1.0 1 23 669 691 669 691 0.98

12 15 0.0011 0.08 13.5 0.1 3 23 699 719 697 719 0.97

13 15 0.00033 0.025 15.1 0.5 3 23 727 747 725 748 0.95

14 15 0.31 23 5.8 0.1 1 23 758 780 758 780 0.95

15 15 0.0049 0.36 11.5 0.0 1 20 1302 1321 1302 1324 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00015	0.011	16.2	1.3	1	23	201	223	201	223	0.95
2	15	0.57	42	5.0	2.5	3	23	231	251	229	251	0.95
3	15	0.00014	0.01	16.3	1.3	1	23	392	414	392	414	0.98
4	15	0.00096	0.071	13.7	0.4	1	23	420	442	420	442	0.99
5	15	0.00063	0.046	14.3	3.3	1	23	478	500	478	500	0.97
6	15	0.0082	0.61	10.8	0.3	1	23	526	548	526	548	0.94
7	15	0.00052	0.039	14.5	0.2	1	23	554	577	554	577	0.97
8	15	0.31	23	5.8	0.3	5	19	588	602	585	603	0.91
9	15	0.00037	0.027	15.0	6.8	1	23	612	634	612	634	0.97
10	15	0.037	2.8	8.7	0.6	2	23	640	661	639	661	0.97
11	15	9.6e-06	0.00071	20.0	1.0	1	23	669	691	669	691	0.98
12	15	0.0011	0.08	13.5	0.1	3	23	699	719	697	719	0.97
13	15	0.00033	0.025	15.1	0.5	3	23	727	747	725	748	0.95
14	15	0.31	23	5.8	0.1	1	23	758	780	758	780	0.95
15	15	0.0049	0.36	11.5	0.0	1	20	1302	1321	1302	1324	0.93

Sequence Information

Coding Sequence: atggATAATAGTGAATATGTTGGTGATAGCATACAATGGATACAACAAACTGTTAAAAGTGCAGCAGATGAGACGACCACAACGACGTCTCAATTATTAATAGATTCTCAATCGTCACAGTCTGATGACCTGATAGTAAATAATAGTTCAACGTGCAGTTTTTTGGGTGTGGGAAATGATACGGATATAACCAATCTGGATCAAATAGCTgcagaaaatttaatatttatggcaCGTGATGGTAAAATGACTGAAATTATTACTACTGCTGATACCAATGAAAATGAAGTTCTTGTGGTGGCAGCTAGTGATGGTACACAAATTAATTGTGATGGTATTTTGCAACAAGCTGCTTTAATACAGAATGAAGAATCAAATGATGATGGAATTTATGCTGACCATGTTCAGGTTGATCATTATACCGACAATACACCGCAAATGGTAACAGAAGAAATTATAACGGATGATTGGGTACAACATCAGGGTGAAGAAAGaGTTGAAATACCAGCCGAGCAAATTATTGGCTCGGgttcacatatattattagatATGGAAGTGCCTTTATCTACTGTACAGGATGAATATTCAGTTCTTCGACCATATCCTTGTGATTTTTGTAGTCGACGATTTCGCAAAAAAACCAGTCTAATGAATCATATGGTGGCTCATCAAAGCGATCGCCctcatttatgtaaattatgtaaCTCTCGTTTTTTGCGGCGACAAGATTTAATCAATCATTTAAAAGCACATGCCGAGGAAGAACTTCCTATGGATGATAATGATTATATACATTTCGATGGTGGCGGATCCCCTGGACAGCGCCAATCAAATGATCAATTCTATGAGCAAAGTTGGAGTGTGCCAAGTGAATCGTTACTGGTAAAAAGTAACCTTAAATATAATATCTCAGATATAAACCCTGCAACTGCCACCAGTTTAATTCGAGTAAGTCCGCCCAGTGGTTCAAGGGGTCGAATTAGCAGATTAAAGCTTAGGGAAGGAATTTCATATCTAGAGAACTCGCACAATAGCGATATTGGCCAACTGAGCTATGAGAATGATCAAGTGATTACCCCCTTGGAGAGTGCCTTGCATTTACAGGACGATTCTAAAGCAAATGTTCAAATGGAATTGCATCGAAAGGGTCTCGCTGTGGAGAGAAATAAACCGTTTGTTTGCCATCAGTGCGGCTTAGCATTCGCCCGTGAAAAGGCTTTTCTGTCCCATACCAAGACTCACCGCCAAGATTCGCCATATGAGTGCAATCAGTGCAATGAACTGTTTTGGGATAACGACAGCTTGCAGGAACATCAAAAAACTCATTTGTTCGAAGACAGCAACTCTGAATATGATCCCAATGAAGGTGAAAAGGGTGATGACGATGAAACTCAAACGGAATCGGAGGCTGGACAGAAATTATACGgtgattttttttgcagcatgTGTGGCATATCGTTTCATCGGTTCGATCTATTGAAGAAACATGCCAAATCGCATAAAGGTGCAGAAAATGAAGCTGTGGAGGATAAAAACAAAGCGAGTAACAGCAACTGCGACAGCAACAAAGATCACCATTGCTGTAATACGTGCGGGGAAACATTTGCTGAAGCTTTAGATTTATTGGCTCATGCTGAGGTTCATGCCAGATATCCGCCATTTAAATGTGTCCTGTGCGGTGAGACGTTTATTGAAGAGTCCACTATAAAGCGGCATCTGCAAGTGCAGCACAGCAATGAAATGACAGAGAATTCTTGCATACTGTGTGGAAAAGGGTGTCGAGATCGTAAAGCGTTGATTAAGCATGCCTGGGATCATTCCCGTGAAAAATGTCACTCATGTTCGAAGTGtggtaaaaattttcataataaggCGCGCCTGAAGCGGCACATGACGTCACATCGTGACAAATCGGTGCAGTGTGAAGTATGCCGTGAAGCTTTTCCAGATGGACGTACGTTGTCGAATCATCGTCACAGTCATAGCACCAACTCGGGTAAGTTGTTTCCCTGCCACGAGTGCGGCAAAACATTCGGTTCGCGCAGTTCGCAACAGATTCATGTCCGTATACATACCGGGGAGCGGCCGTACGGTTGCCGGTACTGTTGGAAGGCATTTGCTGATGGTGGTACTTTACGCAAACACGAACGCATTCATACGGGAGAGAAACCGTATGGCTGTTCGGTGTGTCCCCGGGCGTTCAACCAAAGGGTTGTGTTGCGGGAACACATACGTTCGCATCACTCGGGTTTGGACAATAAACGTGGCACTTACTTTTGTACTGTATGCTCTGCTGAAATGTCCTCCTCCCGGGACTTGATACAACATCTCATAGAACATAGTGATAAGAATACTGCTAAACAAAGGCAGCCGGTGGCTGGCCCACGCAAATATAAACGTCGCCGCAAGCTTAAGCCGCACGAATTGGCTCGCTTGAAGCGCGAAGGTAAATGTTTCGAAGTTGAAAATTTCAGTGACTTTGATTTATCGGACATTGACGATTTGCTGTGCTTGAATGACTCCTCTACTGCCACCAATGACAATGAAGAATCaattaaaaagcaaattaactccaaaaaaaccaacaataacaatcacTTTAAACATAAATCACAACAATCCCACCTAGAAATGGATGCGGATGCGGTTAATTGGgaggataataataaaaaaagctcTACAGCAACCAGAACGCATAACATTGGAGAAtctttattaaagaaaaacatcCTGCCTAGCACGAATGATTTAGTGATGGACGTAACGGCTAGTACGGAACAACAGAATTCAACAACAGTGAAAATAAGAAGTAGTTTACGCCGTAAATCCAAACAAAGTCCCAACGTAACGGAAAAGTTACAACCAACTGAAACACTAGGAAAAGggagaaaaatgaaaacattaaaatctgTAGCGAATCGCCCTCAAATGATACACACAGAAAAACGCAAAGCAACCGTTACGGCGGCGGGAAATAGTGATGAAGGAAATAaaggtaaaaagaaaaaaagaaacatatcAACGCGTACCATCATTCGCTCGAATATAGCTTCTCTGCCCAAAACGTCTACAATATTAGATGATTATGATATAATTTCACCACAATCACAACCGCCCAAACAAATCAGTTCCAGTCCGTTACGTGTTAAACAAGAACacaaacaacaccaacaaactTATGAACGAAAATCTAGCAGCCGGATGAACAGTTGTTCACGTCTAATACAATCATCAACCAATGATCTGTACGATGCTCATTTATTGTTAGAAGCTTCAGGTTTGCGCCACGATTTGGATGATATGCTGCATTCACCATTGAAGGCGGAAAAAAGTGGTGGTCGGCAACGTTTTATCAGTGAATCATCATCACAATTCATGACAGAGCGGCCGGAAGAAGAGCAACACCTTATTAAAATCGAACCTACCTCACCCGATTTACGAGAAATTGTTAATTGTGTAAGCACCACCACCAACGAAGTAGAACTGGAACCCTCCTCAATACGCACCAGCACAAGATCCAGTGTTCGCACCACGCAGCACCTAAGACGTGGCAATGCTAAAGTGGGACAGCAAACCATGCATACTTCAAAATTTTTGACATTTCCCACACACATCGCCAATTCGAATGATATTAATACAAAGCCAAGTACTGCCAACAGCAGCCATTTAAACCCTACTACCTCAAAGTCTTTGAAAACAATCGATAATTCGATCATTGCATCCTCGAATGCCTCATCATCGTCCTTTCTAGATTACGGTTATAGCCCAACAGATGTAACGTCTTCTACAAGTAGTGGTAATAGTTCCTTCTCTTCCATAAATGCTGTAGTGTCGGCGGCTGATGCCAACGCAGCAGCGGTTGCTCAACAGAATCCTGCCAATGTGCGTAGACCGCGAAGATATTTTGAGTGTGAGATGTGTTCAGCTGTCTTCTCTGATCGTGCCCAATTGCTTGATCATGTGCCCATACACATTTAG
Protein Sequence: MDNSEYVGDSIQWIQQTVKSAADETTTTTSQLLIDSQSSQSDDLIVNNSSTCSFLGVGNDTDITNLDQIAAENLIFMARDGKMTEIITTADTNENEVLVVAASDGTQINCDGILQQAALIQNEESNDDGIYADHVQVDHYTDNTPQMVTEEIITDDWVQHQGEERVEIPAEQIIGSGSHILLDMEVPLSTVQDEYSVLRPYPCDFCSRRFRKKTSLMNHMVAHQSDRPHLCKLCNSRFLRRQDLINHLKAHAEEELPMDDNDYIHFDGGGSPGQRQSNDQFYEQSWSVPSESLLVKSNLKYNISDINPATATSLIRVSPPSGSRGRISRLKLREGISYLENSHNSDIGQLSYENDQVITPLESALHLQDDSKANVQMELHRKGLAVERNKPFVCHQCGLAFAREKAFLSHTKTHRQDSPYECNQCNELFWDNDSLQEHQKTHLFEDSNSEYDPNEGEKGDDDETQTESEAGQKLYGDFFCSMCGISFHRFDLLKKHAKSHKGAENEAVEDKNKASNSNCDSNKDHHCCNTCGETFAEALDLLAHAEVHARYPPFKCVLCGETFIEESTIKRHLQVQHSNEMTENSCILCGKGCRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMTSHRDKSVQCEVCREAFPDGRTLSNHRHSHSTNSGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYGCSVCPRAFNQRVVLREHIRSHHSGLDNKRGTYFCTVCSAEMSSSRDLIQHLIEHSDKNTAKQRQPVAGPRKYKRRRKLKPHELARLKREGKCFEVENFSDFDLSDIDDLLCLNDSSTATNDNEESIKKQINSKKTNNNNHFKHKSQQSHLEMDADAVNWEDNNKKSSTATRTHNIGESLLKKNILPSTNDLVMDVTASTEQQNSTTVKIRSSLRRKSKQSPNVTEKLQPTETLGKGRKMKTLKSVANRPQMIHTEKRKATVTAAGNSDEGNKGKKKKRNISTRTIIRSNIASLPKTSTILDDYDIISPQSQPPKQISSSPLRVKQEHKQHQQTYERKSSSRMNSCSRLIQSSTNDLYDAHLLLEASGLRHDLDDMLHSPLKAEKSGGRQRFISESSSQFMTERPEEEQHLIKIEPTSPDLREIVNCVSTTTNEVELEPSSIRTSTRSSVRTTQHLRRGNAKVGQQTMHTSKFLTFPTHIANSNDINTKPSTANSSHLNPTTSKSLKTIDNSIIASSNASSSSFLDYGYSPTDVTSSTSSGNSSFSSINAVVSAADANAAAVAQQNPANVRRPRRYFECEMCSAVFSDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00384728; iTF_01114427;
90% Identity: iTF_00384728;
80% Identity: -