Ofri013677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ornithomya fringillina
Gene Symbol
-
Assembly
GCA_963978525.1
Location
OZ021693.1:24696001-24698752[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0012 0.089 13.4 1.8 1 23 127 150 127 150 0.95
2 13 0.00015 0.011 16.2 0.2 2 23 155 177 155 177 0.96
3 13 0.00021 0.016 15.8 5.8 1 21 186 206 186 209 0.96
4 13 5.3e-07 3.9e-05 23.9 4.2 2 23 435 456 435 456 0.97
5 13 3e-05 0.0022 18.4 6.5 1 23 462 485 462 485 0.95
6 13 0.002 0.15 12.7 5.8 1 23 490 513 490 513 0.97
7 13 9.7e-06 0.00072 20.0 1.1 1 23 523 545 523 545 0.96
8 13 4.6e-05 0.0034 17.9 1.3 3 23 552 573 550 573 0.96
9 13 2.9e-05 0.0022 18.5 0.8 1 23 579 601 579 601 0.96
10 13 4.4e-05 0.0033 17.9 1.8 1 23 607 629 607 629 0.98
11 13 6e-07 4.4e-05 23.8 1.6 3 23 637 657 636 657 0.99
12 13 1.7e-07 1.3e-05 25.5 0.2 1 23 663 685 663 685 0.99
13 13 0.011 0.8 10.4 0.1 1 23 690 713 690 713 0.96

Sequence Information

Coding Sequence
atggaTGCTGAAACGCCTCTAACTCGTGAAAATATATGTCGCATTTGTACGCAAAAGAATAATAATCTAAATCCTATTTACAATGCAGTACATTTTGAAGAAAGGTACAGCTGCCCtaaaactacaataacaatagctgATATTATAGGCGAATGCACTAAATATCCGGTAGATTATTATGATCAATTACCCACTCATGTATGCGACGGATGCCTAGAGCTAGCTCGCAATGCGTATTTGTTTAAACGGCAAACAGAGGAGTCTTATTACCGCTTAAAAGCTATATACGACGAGACTTGGACGCCAAAGGTAGAGCCTTCGGACGACGAAAAACGAGTCACGCGTGAACAATTTACGCAAACCGATcgtaaaaatatacataaatgtgaGTCATGTCctcaaacattttttaatgaacgtAATCTTCGTCTACATCGCATGGAGGCGCATTCTGATGGTCGTAAGTGCCGGGTGTGTGGAAAACAATTTGTGTATTTAGGTCAGCTAAGAGTACACCTATCAGTCGATCATCCCGATGAAGGGACAAATTACCATTTTAAGTGTCCCATGTGCAAGAAACTCTTTTCACGAAAAGATCATGTGAAACGGCATTTACGATGCGTACATAAACGTACAGAATTTGAAATTAATAGTACTCAAATAAACTTGTACGAACCAGAAATTAAATTAGTAAAGCGACAAGAGAATGTTTTAGATTATGAAATGCCTGATAGTAGTGAGAACGATCCAGACCAACACTGGTTAGATTATGAAGACGAAACTAAATTGCCAGTTGGGATTGCTGGCATGGATAGTGAGATAGACGAAAATCATTTTGCGGCCACTAATCCGTTTTCAAGTGATGACGAAGACGTTCTTGAGAATCGCAATTTTCATAGCATGACAAAAGAAAAAGCACCTATAGAGAATGAAAAAGAACCAGAATTCTCCATAAAAGtGGAAAATCCCTTTGACGATGATAAGGGAATATCACCGGCCAAAACATCTGTAGATGTttcaaatataagtaaaaaacccACAGGCAGGAAAATAACATCattcaaaaatgaaaacgaaTTCCTGTTAGACGAGGAAGAACCAGAAGAAGGAGAAGgcgaaaaagaagaatatcACAATGATTCCAAGCAATGGGAGTTTGATATGACAAAAAGTGAGGCGGAATGCAAGAAAATAAATCTGAAAATAAGAGAAGGCTCAATTGAGGGGAAGAAAAGGAAGAAGCATAGCTTGGCAGGAAAAACTACACGTGGCCTGTACGCTTCATACAAAGACGACAACAATAGCTGTAAACAATGTGGACGAACATTTTCTCGATACTATCACTTGATGCGTCACATGCTTACACATAGCGATGAGAAACCACATGTGTGTTGCTATTGTGATAAGCGTTTTTCCCGCACAGATCATCTACAAAAGCACATAGCCAGCCTGCACACCGAGAAGCAATTCAAGTGTGACCAGTGTTCGTGCGCTTACGGGCGCAAAGATCATTTGCAGCGTCACAAGGAAACGCGACACAGTGGCAATCCCGGGCCGGCAAAACTATACGACTGTGATATGTGCCCCAAAAAGTTCAGCACAAAGGCCTACCTGATGAAGCATAAACTGTTGCACACAGATCGTTTAATCGCTTGCAAACATTGCCCGGAAACATTCGAGGAGAAGGATCAACTGAGAGAACATCAAAAGAAGTCACACGCACAGCCGCGCAACTTCTTGTGCAGCATTTGTGGGGATAGCTTTCAACGGAACGAATACCTTAAAATTCATATGCGTCGGCATACGGGCGAAAAACCATACAAATGTCGATTTTGTGAGAAGGCTTTTCCGCGTAGCACCGACTTGAAAATGCACGAAAGATATCACATTGGCATCAAGCCCAACCTGTGCACTCTGTGTGGTAAAGGTTTTCATCGACCCTACAATCTCACCATACACATGCGCACCCATACCGGTGAGAAGCCCTACAAATGTCCGCAATGCCCCCAAGCATTTGCACAGAGCAACGATTTAAAGGCACACATACGCCGCCACACCGGTGAACGGTTTCGTTGTGATATATGTAGTGCAGGCTTTCTGCAGCGCTATGGTTTGAAAGCTCACCTCAAGGCTGCACATGGCATCAATGTAACATCGTTTACGGGCCGTTTGAAAAAGGTTCCGCTGACCAATTTAATGGCACAACAGATATTGTGTAATAGCAGtatgcaaaaacaacaacaacaacaacaacaacaacaggaaAGTCCCAGTCCACAGAGagatgaaaaaacaaaaaatattaatacaacaacaataacacttaATCACGTAACTGCTAATACTGAAAATGTTCAGACagcattaaatatttgtagtaCAAATGAACAATTATTGatgtcaacaacaaacagcaacTTATCATTGTAA
Protein Sequence
MDAETPLTRENICRICTQKNNNLNPIYNAVHFEERYSCPKTTITIADIIGECTKYPVDYYDQLPTHVCDGCLELARNAYLFKRQTEESYYRLKAIYDETWTPKVEPSDDEKRVTREQFTQTDRKNIHKCESCPQTFFNERNLRLHRMEAHSDGRKCRVCGKQFVYLGQLRVHLSVDHPDEGTNYHFKCPMCKKLFSRKDHVKRHLRCVHKRTEFEINSTQINLYEPEIKLVKRQENVLDYEMPDSSENDPDQHWLDYEDETKLPVGIAGMDSEIDENHFAATNPFSSDDEDVLENRNFHSMTKEKAPIENEKEPEFSIKVENPFDDDKGISPAKTSVDVSNISKKPTGRKITSFKNENEFLLDEEEPEEGEGEKEEYHNDSKQWEFDMTKSEAECKKINLKIREGSIEGKKRKKHSLAGKTTRGLYASYKDDNNSCKQCGRTFSRYYHLMRHMLTHSDEKPHVCCYCDKRFSRTDHLQKHIASLHTEKQFKCDQCSCAYGRKDHLQRHKETRHSGNPGPAKLYDCDMCPKKFSTKAYLMKHKLLHTDRLIACKHCPETFEEKDQLREHQKKSHAQPRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKAFPRSTDLKMHERYHIGIKPNLCTLCGKGFHRPYNLTIHMRTHTGEKPYKCPQCPQAFAQSNDLKAHIRRHTGERFRCDICSAGFLQRYGLKAHLKAAHGINVTSFTGRLKKVPLTNLMAQQILCNSSMQKQQQQQQQQQESPSPQRDEKTKNINTTTITLNHVTANTENVQTALNICSTNEQLLMSTTNSNLSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00384713; iTF_01114405;
90% Identity
iTF_00384713;
80% Identity
-