Ochl005009.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020529.1:58293952-58297383[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0014 0.12 13.3 1.8 1 23 127 150 127 150 0.95 2 16 3.9e-05 0.0032 18.2 0.2 2 23 155 177 155 177 0.96 3 16 7.7e-05 0.0064 17.3 4.4 1 21 186 206 186 209 0.96 4 16 1.3e-06 0.0001 22.9 3.5 2 23 426 447 426 447 0.97 5 16 3.6e-05 0.0029 18.3 6.5 1 23 453 476 453 476 0.95 6 16 0.00044 0.036 14.9 3.7 1 23 481 504 481 504 0.97 7 16 1.1e-05 0.00095 19.9 1.1 1 23 514 536 514 536 0.96 8 16 2.9e-05 0.0024 18.6 2.1 1 23 541 564 541 564 0.97 9 16 3.5e-05 0.0029 18.4 0.8 1 23 570 592 570 592 0.96 10 16 5.2e-05 0.0043 17.8 1.8 1 23 598 620 598 620 0.98 11 16 7.1e-07 5.9e-05 23.7 1.6 3 23 628 648 627 648 0.99 12 16 2e-07 1.7e-05 25.4 0.2 1 23 654 676 654 676 0.99 13 16 0.0068 0.56 11.2 0.1 1 23 681 704 681 704 0.96 14 16 0.011 0.89 10.5 3.6 1 23 779 802 779 802 0.97 15 16 0.00033 0.027 15.3 1.2 1 23 808 831 808 831 0.94 16 16 0.035 2.9 8.9 2.7 1 23 836 859 836 859 0.92
Sequence Information
- Coding Sequence
- atggaTACGGAAACGCCTCTAACTCGTGACAATATATGTCGGATTTGTATGCAAAagaatattaatttaaatccTATTCACAATGCAGTGCATTTTGAAGAAAGATACAGCTGCCCTAACACTACAACCACAGTAGCTGATATTATAAGTCAATGCACTAAATATCCGGTAGATTATTATGATCAATTACCCACTAATGTGTGCGACGGATGCCTAGAACTAGCTCGCAATGCGTATGTGTTTAAACGGCAAACAGAAAAGTCTTATTGGCGCTTAAAAGCTATGTACGATGAAACTTGGGCGCCAAAGGTAGAGCCGTTGGACGACGAAAAACGAATCACGCGTGAACAATTTACGCAAACCGATcgtaaaaatatacataaatgtgaATCATGTcctcaaacatttttcaatgaaCGTAATCTTCGTCTACATCGCATGGAGGCGCATTCTGGTGGTCGTAAGTGCCGGGTGTGTGGAAAAACATTTGCGTATTTAGGTCAGCTAAGAGTACACCTGTCAGTCGATCATCCCGATGAAGGGACAAATTACCATTTTAAGTGTCCCATATGCGAGAAACTCTTTTCACGAAAAGATCATGTGAAACGGCATTTACGATGCGTTCATAAGCGTACAGAATTTGAAATTAGTAGTACTCAAATAAACTTGTACGAACCAGAAATTGAATTAGTAAAGCGACAAGAGAATGTTGTAGATTATGAAATGCCTGATAGTAGTGAGAACGATCCAGACCAGCACTGGTTAGATTATGAAGACGAAACTAAATTGCCAGCTGGGATTGCTTGCACGGATAGTGAGAGAGACGAAAACAATTTTACGGCCACTAATCCATTTTCAAGTGATGACGAAGACGTTCTtgagaaagaaaaagaaccTATAAAGAATGTAAATGAACCGGAATTCTCCATAAAAGtgGAAAATCCCTTTGACGATGATAAGGGAATATCATCGGCCAAAACATCTGTAGATGTTtcaaataaaagtgaaaaaccCACAGGCAGGAAAATAACACcattcaaaaacaaaaacgaattcCTGTTAGATGAGAAAGAACCAGAAGAAGACGAAAAAGAAGATCACAATCACAATGATTCCAAGTATTGGAAGTTTGATACGACAAAAAGTGAGGCGGAATGCAAGAAAATAAATCTGAAAATAAAAGACGGCTCAGATGAGGGGAAGAAAAGGAAGAAGCATAACTTGGCAGGAAAAACTACACGCGGCCTTTACGGTTCATACAAAGACGACAACAATAGCTGTAAACAATGTGGACGAACATTTTCTCGGATCTATCACTTGATGCGTCACATGCTGACCCACAGCGATGAGAAACCACACGTGTGCTGCTATTGCGATAAGCGTTTTTCCCGCACAGATCATCTACAAAAGCACATAGCTAGCCTGCACACCGAGAAGCAATTCAAGTGTGATCAGTGTTCGTGCGCTTACGGGCGCAAAGATAATTTGCAGCGTCACAAGGAAACGCGACACAGTGGCAATCCCGGGCCAGCAAAACTATACGACTGTGATATGTGCCCCAAAAAGTTCAGCACGAAAGCCTACCTGATGAAGCATAAATTGTTGCACACTGATCGTTTATTCGCTTGCAAACATTGCCCGGAAACATTCGAGGAGAAGGATCAACTGAGAGAACATCAAAAGAAGTCACACGCACAGCCGCGCAACTTCTTGTGCAGCATTTGTGGGGATAGCTTTCAACGGAACGAATACCTTAAAATTCATATGCGTCGGCATACGGGCGAAAAACCATACAAATGTCGATTTTGTGAGAAGGCTTTTCCGCGTAGCACCGACTTGAAAATGCACGAAAGATATCACATTGGCATCAAACCCAACCTGTGCACTCTGTGTGGCAAAGGTTTTCATCGCCCCTACAATCTCACCATACACATGCGCACCCATACTGGCGAGAAGCCCTACAAATGCCCACAGTGCCCCCAAGCATTTGCACAGAGCAACGATTTAAAGGCTCACATACGTCGTCACACCGGTGAACGGTTTCGTTGTGATATATGCAGTGCAGCCTTTCTGCAGCGCTACGGTTTGAAAGCTCACCTCAAGGCTGAACATGGCATCAATGTAACATCGTTTACGGGTCGTTTGAAAAAGGTACCACTGACCAATCTAATGGCGCAACAGATATTGTTGGAACCCACTGAATGGAGTGAACAGTATGTGGCTGCCAAAGATTATGAACATGCTATCAAATATAATAGCAGTACACGCTCCAAGCACAGCAATGAAGAAACTATTGCACGCACTCGTAATAAGAAAAAGGGAAATAAAAAGATATTTCCGTGTTCAGTTTGTCACTATGCGTTTAAATTACGCTGTGATATGATGCGGCACTACGAGACCATACATACGAATGAGCGTCCATTCGTTTGTAACATGTGCAGTAAGAGTTTTAAGCGAAAGGatattttattgaaacatAATCGCGAGATACATGGCTTGAAGCAATTCATCTGCAACTATTGTGATGCCACCTTTGCCACCTACTGGCAATTAACATGCCATAAGAAGTTGTATCATAACTAG
- Protein Sequence
- MDTETPLTRDNICRICMQKNINLNPIHNAVHFEERYSCPNTTTTVADIISQCTKYPVDYYDQLPTNVCDGCLELARNAYVFKRQTEKSYWRLKAMYDETWAPKVEPLDDEKRITREQFTQTDRKNIHKCESCPQTFFNERNLRLHRMEAHSGGRKCRVCGKTFAYLGQLRVHLSVDHPDEGTNYHFKCPICEKLFSRKDHVKRHLRCVHKRTEFEISSTQINLYEPEIELVKRQENVVDYEMPDSSENDPDQHWLDYEDETKLPAGIACTDSERDENNFTATNPFSSDDEDVLEKEKEPIKNVNEPEFSIKVENPFDDDKGISSAKTSVDVSNKSEKPTGRKITPFKNKNEFLLDEKEPEEDEKEDHNHNDSKYWKFDTTKSEAECKKINLKIKDGSDEGKKRKKHNLAGKTTRGLYGSYKDDNNSCKQCGRTFSRIYHLMRHMLTHSDEKPHVCCYCDKRFSRTDHLQKHIASLHTEKQFKCDQCSCAYGRKDNLQRHKETRHSGNPGPAKLYDCDMCPKKFSTKAYLMKHKLLHTDRLFACKHCPETFEEKDQLREHQKKSHAQPRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKAFPRSTDLKMHERYHIGIKPNLCTLCGKGFHRPYNLTIHMRTHTGEKPYKCPQCPQAFAQSNDLKAHIRRHTGERFRCDICSAAFLQRYGLKAHLKAEHGINVTSFTGRLKKVPLTNLMAQQILLEPTEWSEQYVAAKDYEHAIKYNSSTRSKHSNEETIARTRNKKKGNKKIFPCSVCHYAFKLRCDMMRHYETIHTNERPFVCNMCSKSFKRKDILLKHNREIHGLKQFICNYCDATFATYWQLTCHKKLYHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115155;
- 90% Identity
- -
- 80% Identity
- -