Ofri000271.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ornithomya fringillina
Gene Symbol
sip1
Assembly
GCA_963978525.1
Location
OZ021690.1:2186885-2189633[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3e-94 2.8e-90 302.7 16.7 1 275 416 686 416 686 0.99
2 2 0.28 2.6e+03 -2.2 0.0 241 264 697 720 691 732 0.62

Sequence Information

Coding Sequence
ATGTCTGATAATGAGTATGAACGTTTTGAAGTGACCGATTATGATTTGGATAATGAATTTAATCCTAATCGGCctcgaaaaaaattaacaaagcACCAACAAATTTATGGCATTTGGGCTGATGACAGTGATATTGAAGAAGAGCTGTCTGAACGACGACGTAAAGATCGTTCAGGATTTGGTGGTAGTGCTAATCTCAGATCGAGACGGTCTAAGGATTACACGGCACCAGTTAGTTTTGTGGCTGGTGGCATTCAACAGTCCGgcaagaaaaatgaaaaggaTAAAGCAGAGGAGGATGACAATGATACCATAACTGATGAAGATGATGACATAGAAGAATACCAAGGTTTGGGTAATAATCAACCATCGGCCATTGTACATGATGACGATTCAGCAACCACCAGTGACGAATCAGAAGAGGAAGTGAAACCGAAAAAGTCGAAAGTTGCTGCTACAGCTAAACCGAATCACAATAGTAATTTGAAAGTGGGAGCCTGGGAACAGCATACTCGTGGTATTGGCGCTAAATTACTGCTACAAATGGGTTATGAGCCTGGCAAGGGTTTAGGTAAAGATTTACAAGGTATAGCTCAACCGGTGGAGGCATACGTACGTAAAGGTCGTGGCGCTATTGGAGCTTATGGCCCCGAAACTTCCGCTTCTGTAGCAGACAAGCAGCACCCAGCAGCTATGCTTGATGGAAACAATCGCGAGATAAAGGAACACAAagagaaatttaataaatggaagaaaacggaaaaagcaaataagaaatattcttacCGTACCGTTGAAGAGGTATTGGAAAAGGGTAAAAAGTCGAATTTTATATTCAGCGATAAAATCAGTAAACAACTGGGCAATGTTCCTGTTATTGATATGACTGGACCGGAGAAACGTGTATTGAGTGGTTATCATGCTTTAGGTTCCAGCAAAGTGCAAGATGAAGATTTATATGAACTGAGCGGAGACGCACAAAAGAAGACCAGCCGCACTTCAACTACCCCGGGATTTGCTTTGCCCGAATTGATGCACAATCTCTCCTTAATTGTGAATATGTGCGAACAGGACATTCTCTCATTAGATACAAGTGAACGTTCAGCCGCCGATCGTCAAGTAGCtttacaacaagaacaaaaacaactagaggaaattattaaattggaACAAAATCACATAAATACGTTGGAGGAGGCATTGAAGCTCGTTCATGAACTCACATCCAATGATGGACAATTAACATTACAAAGGgcggaaaaaatatttttagaattgCAAGAACATTACACGGCCGAATATAAAGAATTCTCTTTGGGGGATTTGGCGGCCGGTGTTATAGCTCCCTTGGTGAAGAGTAGCTTAAGTGTGTGGCAGCCCTTAGAGCAACCCACGCAACACGTggatgtaattaaaaaatggcGCTCCATTTTAGATACACATGCCGATCCACAATCGGCCAACCATTCCAATATATTTGATCCATATTCGTCCCTGATTTGGGCCGGTGTAGTGCCATCGTTTCGTGCTTGTGCCGAACATTGGAATCCCAAAAATCATCAAGCCATGGCCTCTTTGCTCGACTGTTGGGCTCCACTGTTTCCCTCATGGATATTGGATTCCGTTTTAGAGCAATTGGTATTGCCTCGCCTATGTACGGGTGTCCGTTTGTGGGATCCTTTAACCGATACAGTACCCATACACATATGGATTTTGCCCTGGAACGCAATATTGGGACACAAAATGGAAGAAACTATTTATCCCATTATACGGCAAAAATTGGGTAATGCGCTGCAAGCGTGGATGCCGCAAGATCGTTCGGCGCGGGCAATGCTGACGCCGTGGAAGGAGGCCTTTGACACACAACAAATGGAAATATTCCTAATGCAACATATTATACCCAAATTACAGTTAGTGTTGAgtgattttcttataaatccCCTGCAGCAGGATTTGGAACCTTGGAATCAGGTGTGGGAATGGCATGAATTAATACCAACCGTACAAATGGCCCGTTTGTTGGATAAACACTTTTTTCCCAAATGGATGCAAGTGTTGGTCATGTGGCTCAATCAATCACCCGATTATGTAGAGATCTCCCGTTGGTATTCCGGCTGGAAGAGTATGCTGTCCAAGGAGATATTAAACGAGCCCAACATTAAAGATTACTTGCGGAGAGCTTTAGAAATAATGCATCGCGCCACTGATACGGTCATTAACCCACACCCAGCACCAATAGCGCCTCCACCACCGCAACTACCATCCCTCACACCTCAACCTTTTGTCGATTTAACACTGAGTGCACCGACTCAATTGGAGTTTAAGGAATTGGTGTCGCGCAAATGTGCTGAACGGGGTGTATTGTTTGCACCCATACCGGGACGTCGCGAACATGGCAAGCAAGTGTACCGGGTGGGCAAACTCTATTGTTACATTGATCGTAACGTGTGCATGCTGAGTGACAACGGTTTTAAGAATTGGTTGCCCACACCGCTGCAACCTATGCTGGAGCGAGCTGTAACAGGAAATCTATAA
Protein Sequence
MSDNEYERFEVTDYDLDNEFNPNRPRKKLTKHQQIYGIWADDSDIEEELSERRRKDRSGFGGSANLRSRRSKDYTAPVSFVAGGIQQSGKKNEKDKAEEDDNDTITDEDDDIEEYQGLGNNQPSAIVHDDDSATTSDESEEEVKPKKSKVAATAKPNHNSNLKVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIAQPVEAYVRKGRGAIGAYGPETSASVADKQHPAAMLDGNNREIKEHKEKFNKWKKTEKANKKYSYRTVEEVLEKGKKSNFIFSDKISKQLGNVPVIDMTGPEKRVLSGYHALGSSKVQDEDLYELSGDAQKKTSRTSTTPGFALPELMHNLSLIVNMCEQDILSLDTSERSAADRQVALQQEQKQLEEIIKLEQNHINTLEEALKLVHELTSNDGQLTLQRAEKIFLELQEHYTAEYKEFSLGDLAAGVIAPLVKSSLSVWQPLEQPTQHVDVIKKWRSILDTHADPQSANHSNIFDPYSSLIWAGVVPSFRACAEHWNPKNHQAMASLLDCWAPLFPSWILDSVLEQLVLPRLCTGVRLWDPLTDTVPIHIWILPWNAILGHKMEETIYPIIRQKLGNALQAWMPQDRSARAMLTPWKEAFDTQQMEIFLMQHIIPKLQLVLSDFLINPLQQDLEPWNQVWEWHELIPTVQMARLLDKHFFPKWMQVLVMWLNQSPDYVEISRWYSGWKSMLSKEILNEPNIKDYLRRALEIMHRATDTVINPHPAPIAPPPPQLPSLTPQPFVDLTLSAPTQLEFKELVSRKCAERGVLFAPIPGRREHGKQVYRVGKLYCYIDRNVCMLSDNGFKNWLPTPLQPMLERAVTGNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00384570; iTF_01114254;
90% Identity
iTF_00384570; iTF_01114254;
80% Identity
-