Ofri007047.1
Basic Information
- Insect
- Ornithomya fringillina
- Gene Symbol
- SMARCC2
- Assembly
- GCA_963978525.1
- Location
- OZ021691.1:14124636-14128328[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2 3.6e+03 -1.7 0.0 34 43 203 212 202 212 0.87 2 2 2e-14 2.2e-11 43.7 0.2 3 44 647 688 645 690 0.95
Sequence Information
- Coding Sequence
- atgtCGAATTTGGGACCTAAAAAGGATGGTGGTCCGAATATTGAATTCTTTAATACATCAGAGTCATTACAAGGCTTTGAAACGATTCGTTTATGGTTGcagaaaaattgcaaaaaaTATCTGGCAAATAGTAGTGAACCAATAAGCAAGGAAAGCTTAGCCCAGTTACTTATCCAATTTCTTCAATATGTTGAAGCGAAATTGGGAAAGAACTCTATAGAGCCACCAGCGACTCGTATACCGATGCGTTGTTTCTTGGATTTTAAACCTAGTGGAGGACTATGCATAATATTTTCGACCATGTTTCGCTTTCGCGCCGAGCAGAGGGGTAAAAAGTTTGACTTTTCTGTTGGAAAAAATCCTACCCGTAAGGATCCGAATATTCAGTTACTTATCGATATTGAACAGGCACTTGTGGAAGCTGATCTATATCGCattccttatatatatataagatccGAAGTCGATAAACAATTGTCGACACGATTGCGTGAAATTTTGGCTACTAGACGCGTGGAAATTGTATCGGATGAAGAAGATGctacacatataatttatcCTGTTGTGGATCCCCATCCAGATGAGTATGCACGACCGATTTTTAAGCGTGGTAACCATGTCATGTTGCATTGGTATTGTTTCCCGGAATCATATGACACTTGGATCGTTAATACATTCGGACTGCCGGATAATGTACCAGAAAATCCCGAATCTCCGCTTGAACGTTGGCGTGTATCAGCGTCATGGCTTTTAGACTTGGAGCAATATAACGAATGGATGGCTGAGGAGGATTATGAAGTAGACGAGTTAGGTAAGAAAAAGATGCACAAACAGTGTTTGTCTGTGGAGGATATTATGTCATTTGGTGTGgatgaaaagaaaaagtcGAGCAGCTCAGGTGCAGccaaacaaaaacgaaaaagatCACCATCCCCTTGTTCATCCAAGTCTGGTAAACGCAAGCGATCTCCGGCAGTTCTGCATAAAAAGTCTCGCAATGAGGAGGATGATGAGGATCTCACCCGCGACATGGATGATCCACCATCGGAAACTAATCTGCAAGAAGTTATGAAGTCATCATCATTACAATCCACAGCTAGCCCGGCTCCCGGTAATAAATCTCGCATTGATAGTGAAATGATGCCCATTAAAGGTGGCACTATAACTGATTTGGATGATGAAATGACGGGCGGTAGTGCTGCACAAGCATTGTCCACGTGTGACGGTGAAAACTCACAAACTGGCAAAACAAGCGACAACAGCAATACACAAGAATTCTCATCATCGGCTAAGGAGGATATGGAAGATAATGTGACCGAACAAACCCATCACATAATTGTACCCTCCTATTCGGCCTGGTTTGATTACAATTCCATACACGTTATTGAAAAGCGCGCCATGCCCGAGTTCTTCAATTCGAAAAACAAATCCAAGACACCCGAAATTTATATGGCCTATCGTAATTTTATGATTGATACTTATCGTCTCAATCCAACCGAGTACTTGACTAGTACGGCTTGTCGTCGTAATTTGGCCGGCGATGTTTGCGCCATAATGCGCGTACACGCCTTCCTGGAGCAGTGGGGTCTCATCAATTACCAAATTGATGCAGAATTACGCCCTACTCCAATGGGTCCACCACCCACATCTCACTTCCATATCCTGTCCGATACCCCGTCGGGTTTGCAATCATTAAATCCTCAAAAAACTCAACAGCCGTCAGCAGCGAAAAGTTTACTTGATTTGGATAAGAAGCCAATTGTTGCTGGAGTCATGAAGGAAAGTAAAGAGGATTCGTTGGATAAAGCACCGCTTACTATCAAAACGGAGCCCATAGAAAATGGCTCAAGTGCCTCGGGTCAGTTTGGTTTAAAGTTGGACCAGTATGCAAAGAAACCGGCAGCAATGAAAAATCGCACGGCAGCCAGCATGTCACGTGAATGGACTGATCAAGAAACTCTTCTGCTACTGGAAGGCTTGGAATTGTATAAAGACGACTGGAATAAAGTGTGCGAGCATGTAGGCACACGCACTCAAGACGAAtgcattttacattttctacGCTTACCCATAGAAGATCCGTACCTGGAGGATGATGGCGGCTTCCTCGGTCCTCTGGGCTGCCAACCAATACCTTTCAGTAAGTCCGGCAATCCCATAATGTCCACGGTTGCTTTTCTCGCTTCAGTAGTAGATCCGCGAGTGGCAGCCGCGGCAGCTAAAGCTGCCATGGAAGAATTTTCTGCTATAAAGGACGAGGTGCCAGCCACCATTATGGACAATCATATGAAAAATGTCGAAAAAGCTTCCGCTGCTGGGAAATTTAATCCTACCTATGGATTGGCGAACAGCGGCATTGCCGGTACTGGCATAGACAAAGAAGATCCAAATGATCCAAATTCAATTAGCGCAGGTTCAGCGGAAGAGGATGGCATGAAGGATATATCTAAAAAGGATGATGGTGGCCCCATGAAtgtaaaagatataaaaaatgagGAAAACAATGTTGAGGGTGAGGGTGGTTCAAACATAAAGGAGAACGATCCCGCCAAACAAGTTTTTAACGAAGCCAATGTACAAACCGCAGCCGCAGCTGCATTGGCTTCTGCTGCCGTTAAAGCTAAACACTTGGCTTCTCTGGAAGAACGTAAAATTAAGTCCTTGGTAGCGTTGCTGGTAGAGAcccaaatgaaaaaattggaaatcaAATTGCGTCACTTTGAAGAATTGGAAACTACAATGGAAAGAGAGCGAGAAGGTCTGGAATATCAACGGCAACAATTAATAACAGAACGTCAACAATTCCATTTGGAGCAATTGAAAGCAGCTGAGTTTCGAGCTCGCCAGCAAGCTCATCATCGTctacagcaagagcagcaatGGCAAATAGCGCCAGGTGCTCCCAGTGGTGGGGGTGGTGGTGTTAGTGGCAGTAGCAGTGGCGGTCCCTCTGGAGCTTTATCTTCGGGTCACGCACTTAGTGGAGGTGGAATGGGGGTTGGTGGCTCTCCAGTTGGTGTTGTCAACATGCCCGGTGGAAATGGCGCTACATCTACATCTTCTCAAGGGGCCACATCAACTACAACAAACATTTCTCATCCTCCAGGAGCGCCCGGTGCCGTAAGTGCTCCATCATCTGGGCAAGCAGTAAATCCCATAGATACCAATGCGTCAGGCATGTCCCTCCCATCATCTGATGGCCCTATCGGATCATCAGTTATTGGTCAACAATTACCACAAATAAACGCCGCAGCGACAATTCCATCATCTCACATTGCAGCAACTATCCAATCACCAAATGTTACCGTACCATCGGCTACCAACATCACTACTTAA
- Protein Sequence
- MSNLGPKKDGGPNIEFFNTSESLQGFETIRLWLQKNCKKYLANSSEPISKESLAQLLIQFLQYVEAKLGKNSIEPPATRIPMRCFLDFKPSGGLCIIFSTMFRFRAEQRGKKFDFSVGKNPTRKDPNIQLLIDIEQALVEADLYRIPYIYIRSEVDKQLSTRLREILATRRVEIVSDEEDATHIIYPVVDPHPDEYARPIFKRGNHVMLHWYCFPESYDTWIVNTFGLPDNVPENPESPLERWRVSASWLLDLEQYNEWMAEEDYEVDELGKKKMHKQCLSVEDIMSFGVDEKKKSSSSGAAKQKRKRSPSPCSSKSGKRKRSPAVLHKKSRNEEDDEDLTRDMDDPPSETNLQEVMKSSSLQSTASPAPGNKSRIDSEMMPIKGGTITDLDDEMTGGSAAQALSTCDGENSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAELRPTPMGPPPTSHFHILSDTPSGLQSLNPQKTQQPSAAKSLLDLDKKPIVAGVMKESKEDSLDKAPLTIKTEPIENGSSASGQFGLKLDQYAKKPAAMKNRTAASMSREWTDQETLLLLEGLELYKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFSAIKDEVPATIMDNHMKNVEKASAAGKFNPTYGLANSGIAGTGIDKEDPNDPNSISAGSAEEDGMKDISKKDDGGPMNVKDIKNEENNVEGEGGSNIKENDPAKQVFNEANVQTAAAAALASAAVKAKHLASLEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQEQQWQIAPGAPSGGGGGVSGSSSGGPSGALSSGHALSGGGMGVGGSPVGVVNMPGGNGATSTSSQGATSTTTNISHPPGAPGAVSAPSSGQAVNPIDTNASGMSLPSSDGPIGSSVIGQQLPQINAAATIPSSHIAATIQSPNVTVPSATNITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114145;
- 90% Identity
- iTF_00384510; iTF_01114145;
- 80% Identity
- -