Ofri014157.1
Basic Information
- Insect
- Ornithomya fringillina
- Gene Symbol
- retn
- Assembly
- GCA_963978525.1
- Location
- OZ021694.1:2387843-2417338[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.85 2.3e+03 -0.9 0.0 43 65 111 133 79 145 0.69 2 2 7.9e-26 2.1e-22 79.4 0.0 2 89 281 366 280 366 0.96
Sequence Information
- Coding Sequence
- ATGGACTGTGCGGGACGTTTAAATACTTCTGCTGTTCGTGATACAGAATCAGGCGAAGAGATGtcTCCTGAAGATCATACTGATGATGAAATGCGCGATTGTGATTCTGCGGACAATGAACAGCACGTGACACAAAGTGCTCTGCGACTGAATGGTCTGACAACAAGTAATGGTGTAGATATGAGTTATTCGGTGCGGCTGGCGGGAACAGTTCGTCCGCCCAGTCCCGATCATGCCAACCTAATGAAAATCAGTCACCagcaaaatatttatcatcAGCATCAATTTCCACCCAATCACCCACTAAATGCTTTGGGTAATTTTATGGGTATTGGTGGTTTGCATAACATTCCAAATTTGCAGCAACATAACGATGTGTTggagaaattaaaaatgcaaGTGCGTGATATGAAAGTGGGCCTAATGGAACATGATTATATAAATCATGGACCTACAATCGGGTCGAATGTATTGCCCACCTCCATTAATACAGCTTTCACCATCCCTACCACGACGATGGCATCGTTTGGTCATGAGGCGGCGgctaacagcaacaataataatgctcTAGCTGGTAATTCGGCTAATGTGCGCATAAACACTGCAACAATGACAACCGTACCGAATACATCATCCATGGCTAATGGTTGTGGTAGCAGTAGTAAtggaaacttttcatttacatCACCCAACGCCCCAAATTCAAAAGATGTGAATCCTGCCTCTAATTCCTCCACATCCAGCGATGCTTCTAATTCTCCCCAACAAAGTAACGGTTGGAGTTTTGAGGAACAATACAAACAGGTCAGACAGCTGTACGAGATCAATGACGATCCGGGTcgaaaagaatttttggatgatttattttcatttatgcaGTCGCGAGGCACACCCATAAATCGTTTACCCATAATGGCAAAATCTGTGCTGGACTTGTACGAACTATACAACTTAGTTATTGCGCGCGGTGGACTAGTCGATGTTATTAACAAGAAGCTATGGCAAGAAATTATCAAGGGATTGCATTTACCATCAAGTATAACCAGTGCAGCATTCACTCTACGAACCCAAtacatgaaatatttgtacccaTATGAATGCGATAAAAAGAATCTGAGCACACCTATCGAACTCCAAGCAGCCATAGATGGTAATCGCCGCGAAGGCCGTCGTTCCAGTTATGGCCAGTACGATACAATGCACCATCAAATACCGATGCAGCAATTGTCACGGCAAGCGTTGCAGAGCAGCATACAACAAATGTCACCATTGGCATTGGTGACACACGCTGCCGCCACCAATACTCAGCAAGCTCAAGCTGTGGCAGCTGCCGCCGCTGCACATCATAGACTGATAGCGCCCACGTTCGGCCAAGTGACCAGTGCAATGTCTCAGGAAATTGAGCAACGCATGATTGGCTACTTGAAATTACTGCAAGCGGATAAAGAACAGCAGAGTGCTGCTGCGTCATCAGTAGCCATTAGTAATAGTTCTGCTAACGTTTCAGCTCTGTCACCACGtgatcagcagcagcagcaccagcaACAACAGTCGCCGGGATCTCAATATCTAAGATCTCAAAGTGCTGATATTAGCCCCCGAGAAGCCCTGAATGTAGCAATTTGGCAATTATGCCATAGTAACTCCAATCTGCCTGCTGCAATGAATATTCCACAACTGGATATAAACAATGAATCAACCAATGCTGTacataatttacaacaacatcgCAACGAGGCGCTGAACCTGTCGGACATATCCCAAAATCTTAATGCAATTAAACGAGAACGCGAACCCCACACTAGTCCACATCAACTTGAACATGATGATCACCAGCCACCACCAAACAAACGGGCCGGCTTCGATTCCGAATTTTATCTACCAACTAATATTGATGATATAGCCAGAGCGAATGGGGCAAATTTCCACTGTAAAAGTAGTGATAATGAATGCCCTGAGAAACATAATAATGACGGCGAGGAGGATGGGGAATTAGTTAATGAACATTATGAACGTCCTACCAATAAAAACTCATCTCATagaaattctaaaaatgaacaCCAAATAAATAGAATGCCCGCTCGTttggaaaatttacaatcatcAGAAAATCATACACATCAAGACAAATCGGATGATTCGGCTATTGAACATTCTCCTAACACATGGGTTACTTCGCCCAGTAATCCTGAAATCTCTCCGGTGTCTAGTAAAAAAGGTCACTTTTTAAAGAAAGCACAACAAACGGATGCGGACAGTAATGAAGATTGCCATGGAACAAGTAGTGGAGGGCATTCAGCTTCCAATGCAATACAGGCTTTAAGTCTTTTATCCGGTATGCAATTTCAAATAACGCGCAGTGTTATGGGAGCAAATGATAGAGAAGAACTGATGGTGAAACTTGAATTGAATGGCGTCATGTACTCTGGAGTGCTTAAAGCTAATAGTAAACAAAATGCCAGATATTCGAATACTTCCAATAATAGTAATGCCGGTGACAGTAATAACAGCAGTTGTAATACGAATGGCGGGATTCATGATCTAgacaatagaaataaaaataaaaatgttgacaaCAGTGATGCATCATTAAATGGCAGGACGACAAATAACCAACCCCTAAACTTGGAGTCTATGGATGTATCAGAATCCATTTCAAATGTGGAAACATCAGCAACTGAAATGTCCCTTTGTACAGAAGAAAATTCTGTAGCAGTTAAAAAGGAGAATACTGCCTTTAGTAGCAACTCAACTAGCGGCAGTGCTCCTTCTAATGACTCTTTCATTACCTCTTAG
- Protein Sequence
- MDCAGRLNTSAVRDTESGEEMSPEDHTDDEMRDCDSADNEQHVTQSALRLNGLTTSNGVDMSYSVRLAGTVRPPSPDHANLMKISHQQNIYHQHQFPPNHPLNALGNFMGIGGLHNIPNLQQHNDVLEKLKMQVRDMKVGLMEHDYINHGPTIGSNVLPTSINTAFTIPTTTMASFGHEAAANSNNNNALAGNSANVRINTATMTTVPNTSSMANGCGSSSNGNFSFTSPNAPNSKDVNPASNSSTSSDASNSPQQSNGWSFEEQYKQVRQLYEINDDPGRKEFLDDLFSFMQSRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKKNLSTPIELQAAIDGNRREGRRSSYGQYDTMHHQIPMQQLSRQALQSSIQQMSPLALVTHAAATNTQQAQAVAAAAAAHHRLIAPTFGQVTSAMSQEIEQRMIGYLKLLQADKEQQSAAASSVAISNSSANVSALSPRDQQQQHQQQQSPGSQYLRSQSADISPREALNVAIWQLCHSNSNLPAAMNIPQLDINNESTNAVHNLQQHRNEALNLSDISQNLNAIKREREPHTSPHQLEHDDHQPPPNKRAGFDSEFYLPTNIDDIARANGANFHCKSSDNECPEKHNNDGEEDGELVNEHYERPTNKNSSHRNSKNEHQINRMPARLENLQSSENHTHQDKSDDSAIEHSPNTWVTSPSNPEISPVSSKKGHFLKKAQQTDADSNEDCHGTSSGGHSASNAIQALSLLSGMQFQITRSVMGANDREELMVKLELNGVMYSGVLKANSKQNARYSNTSNNSNAGDSNNSSCNTNGGIHDLDNRNKNKNVDNSDASLNGRTTNNQPLNLESMDVSESISNVETSATEMSLCTEENSVAVKKENTAFSSNSTSGSAPSNDSFITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00384358; iTF_01113991;
- 90% Identity
- iTF_01113991;
- 80% Identity
- -