Cpal013563.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- retn
- Assembly
- GCA_949710015.1
- Location
- OX453293.1:21225660-21255211[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.87 2.2e+03 -0.9 0.0 43 65 111 133 79 144 0.69 2 3 7.9e-26 2e-22 79.4 0.0 2 89 281 366 280 366 0.96 3 3 4 1e+04 -3.0 0.0 42 58 841 857 839 862 0.83
Sequence Information
- Coding Sequence
- ATGGACTGTACCGGACGTTTAAATACTGCTGCTGTTCGTGATACAGAATCAGGCGAAGAGATGtCTCCTGAAGATCATACTGATGATGAAATGCACGATTGTGATTCTGCGGACAATGAACAGCACGTGACACAAAGTGCTCTGCGATTAAATGGTCTGACAAAAAGTAATGGTGTAGATATGAGTTATTCGGTGCGGCTGGCGGGAACAGTTCGTCCGCCCAGTCCCGATCATGCCAACTTAATGAAAATCAGTCACCagcaaaatatttatcatcAACATCAATTTCCACCCAATCACCCACTAAATGCTTTGGGTAATTTTATGGGTATTGGTGGTTTGCATAACATTCCAAATTTGCAGCAACATAACGATGTGTTggagaaattaaaaatgcaaGTGCGTGATATGAAAGTGGGCCTGATGGAACATGATTATATAAATCATGGACCTATAATGGGATCGAATGTATTGCCCACCTCCATTAATACAGCTTTCACTATCCCTACCACGACGATGGCATCGTTTGGTCATGAGGCGGCGgctaacagcaacaataataatgctCTAGCTGGTAATTCGGCTAATGTACGCATAAACACTGCAACAATGACAACCGTACCGAATACATCATCCATGGCTAATGGTTGTGGTAGCAGTAGTAAtggaaacttttcatttacatCACCCAACGCCCCAAACTCAAAAGATGTGAATCCTGCCTCTAATTCCTCCACATCCAGCGATGCTTCTAATTCTCCCCAACAAAGTAACGGTTGGAGTTTTGAGGAACAATACAAGCAGGTCAGACAGCTGTACGAGATCAATGACGATCCGGGTCGAAAAGAATTTTTGGATGATTTATTCTCATTTATGCAGTCGCGAGGCACACCTATAAATCGTTTACCCATAATGGCAAAATCTGTGCTGGACTTGTACGAACTATACAACTTAGTTATTGCGCGCGGTGGACTAGTCGATGTTATTAACAAGAAACTATGGCAAGAAATTATCAAGGGATTGCATTTACCATCAAGTATAACCAGTGCAGCATTCACTCTACGAACACAAtacatgaaatatttgtacccaTATGAATGCGATAAAAAGAATCTGAGCACACCTATCGAACTCCAAGCAGCCATAGACGGTAATCGCCGCGAAGGCCGACGTTCCAGTTATGGCCAGTACGATACAATGCACCATCAAATACCGATGCAGCAATTGTCACGTCAAGCGTTGCAGAGCAGCATACAACAAATGTCACCATTGGCATTGGTGACACACGCTGCCGCCACCAATACTCAGCAAGCTCAAGCTGTGGCAGCCGCCGCTGCTGCACATCATAGACTGATAGCGCCCACGTTCGGCCAGGTGACCAGTGCAATGTCTCAGGAAATTGAGCAACGCATGATTGGCTACTTGAAATTACTGCAAGCGGATAAAGAACAGCAGAGTGCTGCTGCGTCATCAGTAGCCATTAGTAATAGTTCTGCTAACGTTTCAGCTCTGTCACCACGtgatcagcagcagcagcaccagcaACAACAGTCTCCGGGATCTCAATATCTAAGATCTCAAAGTGCTGACATTAGCCCCCGAGAAGCCCTGAATGTAGCAATTTGGCAATTATGCCATAGTAACTCCAATCTGCCTGCTGCAATGAATATTCCACAACTGGATATAAACAATGACCCAACCAATGCTGTacataatttacaacaacatcgCAACGAAGCGCTGAACCTATCGGACATATCCCAAAATCTTAATGCAATTAAACGAGAGCGCGAACCCCACACTAGTCCACATCAACTTGAACATGCTGATCACCAGCCACCACCAAACAAACGGGCCGGCTTCGATTCCGAATTTTATCTACCAACTAATATTGATGATATAGCCAGAGCGAATGGGGCAAATTTCCACTGTAAAAGTAGTGATAATGAATGCCCCGAGAAACATAATGATGACGGCGAGGAGGATGGGGAATTAGTTAATGAACATTATGAACGTCCTACCAATAAAAACTCATCTCAtagaaattctaaaaatgaacaCCAAATAAATAGAATGCCCGCTCGTttggaaaatttacaatcatCAGAAAATCATACACATCAAGACAAATCAGATGATTCGGCTATTGAACATTCTCCCAACACATGGGTTACTTCGCCCAGCAATCCTGAAATCTCTCCGGTGTCTAGTAAAAAAGGTCACTTTTTAAAGAAAGCACAACAAACGGATGCGGACAGTAATGAAGATTGCCATGGAACAAGTAGTGGAGGGCATTCAGCTTCCAATGCAATACAGGCTCTAAGTCTTTTATCCGGTATGCAATTTCAAATAACGCGCAGTGTTATGGGAGCAAATGATAGAGAAGAACTGGTGGTGAAACTTCACTTGAATGGCGTCACGTACTCTGGAGTGCTTAAAgctaaaagtaaacaaaatgcCAGATATTCGAATATTTCCAATAATAGTAATGCCGGTGACAGTAATAACAGCAGTTGTAATACGAATGGCGGGATTCATGATGTAGacaatagaaataaaattaaaaatgttgacaACAGTGATGTATCATTAAATGGCAGGACGACAAATAACCAACCTCTAAATTTGGAGTCTATGGATGTATCAGAACCCATTTCAAATGTGGAAATATCCGCAACTGAAATGTCGCTTTGTACAGAAGAAAATTCTGCAGCAGTTAAAACGGAGAATACTGCCTTTAGTAGCAACTCAACTAGCGGCAGTGCTCCTTCTAATGACTCTTTCATTACCTCTTAG
- Protein Sequence
- MDCTGRLNTAAVRDTESGEEMSPEDHTDDEMHDCDSADNEQHVTQSALRLNGLTKSNGVDMSYSVRLAGTVRPPSPDHANLMKISHQQNIYHQHQFPPNHPLNALGNFMGIGGLHNIPNLQQHNDVLEKLKMQVRDMKVGLMEHDYINHGPIMGSNVLPTSINTAFTIPTTTMASFGHEAAANSNNNNALAGNSANVRINTATMTTVPNTSSMANGCGSSSNGNFSFTSPNAPNSKDVNPASNSSTSSDASNSPQQSNGWSFEEQYKQVRQLYEINDDPGRKEFLDDLFSFMQSRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKKNLSTPIELQAAIDGNRREGRRSSYGQYDTMHHQIPMQQLSRQALQSSIQQMSPLALVTHAAATNTQQAQAVAAAAAAHHRLIAPTFGQVTSAMSQEIEQRMIGYLKLLQADKEQQSAAASSVAISNSSANVSALSPRDQQQQHQQQQSPGSQYLRSQSADISPREALNVAIWQLCHSNSNLPAAMNIPQLDINNDPTNAVHNLQQHRNEALNLSDISQNLNAIKREREPHTSPHQLEHADHQPPPNKRAGFDSEFYLPTNIDDIARANGANFHCKSSDNECPEKHNDDGEEDGELVNEHYERPTNKNSSHRNSKNEHQINRMPARLENLQSSENHTHQDKSDDSAIEHSPNTWVTSPSNPEISPVSSKKGHFLKKAQQTDADSNEDCHGTSSGGHSASNAIQALSLLSGMQFQITRSVMGANDREELVVKLHLNGVTYSGVLKAKSKQNARYSNISNNSNAGDSNNSSCNTNGGIHDVDNRNKIKNVDNSDVSLNGRTTNNQPLNLESMDVSEPISNVEISATEMSLCTEENSAAVKTENTAFSSNSTSGSAPSNDSFITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114794;
- 90% Identity
- iTF_01113991;
- 80% Identity
- -