Basic Information

Insect: Ornithomya chloropus
Gene Symbol: -
Assembly: GCA_963971445.1
Location: OZ020530.1:5738552-5742075[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6.2 5.2e+02 1.8 3.9 2 20 286 304 286 306 0.92

2 19 1.9 1.6e+02 3.4 0.4 1 23 315 340 315 340 0.92

3 19 0.089 7.3 7.6 1.7 2 19 352 369 352 371 0.93

4 19 8.9 7.3e+02 1.3 2.4 3 23 385 405 384 405 0.88

5 19 0.021 1.8 9.6 0.3 2 23 413 435 412 435 0.94

6 19 0.002 0.16 12.9 1.3 3 23 443 463 441 463 0.96

7 19 0.035 2.9 8.9 6.9 1 23 469 492 469 492 0.96

8 19 0.0073 0.61 11.0 6.4 1 23 499 521 499 521 0.98

9 19 0.0011 0.087 13.7 0.0 1 20 530 549 530 551 0.94

10 19 0.0023 0.19 12.7 1.7 1 22 569 590 569 593 0.90

11 19 0.066 5.5 8.0 5.0 1 23 598 620 598 620 0.99

12 19 3.6 3e+02 2.6 0.1 1 23 636 661 636 661 0.95

13 19 0.0079 0.65 10.9 1.2 1 23 674 697 674 697 0.95

14 19 0.0062 0.51 11.3 0.3 2 23 703 725 702 725 0.93

15 19 0.0045 0.37 11.7 0.7 2 23 729 751 728 751 0.96

16 19 0.0015 0.13 13.2 4.9 1 23 757 780 757 780 0.96

17 19 0.072 6 7.9 1.6 1 23 785 807 785 807 0.98

18 19 4.1e-05 0.0034 18.1 4.6 1 23 813 836 813 836 0.98

19 19 0.0018 0.15 13.0 0.1 5 23 850 869 842 870 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6.2	5.2e+02	1.8	3.9	2	20	286	304	286	306	0.92
2	19	1.9	1.6e+02	3.4	0.4	1	23	315	340	315	340	0.92
3	19	0.089	7.3	7.6	1.7	2	19	352	369	352	371	0.93
4	19	8.9	7.3e+02	1.3	2.4	3	23	385	405	384	405	0.88
5	19	0.021	1.8	9.6	0.3	2	23	413	435	412	435	0.94
6	19	0.002	0.16	12.9	1.3	3	23	443	463	441	463	0.96
7	19	0.035	2.9	8.9	6.9	1	23	469	492	469	492	0.96
8	19	0.0073	0.61	11.0	6.4	1	23	499	521	499	521	0.98
9	19	0.0011	0.087	13.7	0.0	1	20	530	549	530	551	0.94
10	19	0.0023	0.19	12.7	1.7	1	22	569	590	569	593	0.90
11	19	0.066	5.5	8.0	5.0	1	23	598	620	598	620	0.99
12	19	3.6	3e+02	2.6	0.1	1	23	636	661	636	661	0.95
13	19	0.0079	0.65	10.9	1.2	1	23	674	697	674	697	0.95
14	19	0.0062	0.51	11.3	0.3	2	23	703	725	702	725	0.93
15	19	0.0045	0.37	11.7	0.7	2	23	729	751	728	751	0.96
16	19	0.0015	0.13	13.2	4.9	1	23	757	780	757	780	0.96
17	19	0.072	6	7.9	1.6	1	23	785	807	785	807	0.98
18	19	4.1e-05	0.0034	18.1	4.6	1	23	813	836	813	836	0.98
19	19	0.0018	0.15	13.0	0.1	5	23	850	869	842	870	0.87

Sequence Information

Coding Sequence: ATGGCAACCAAAGATACTTGTTTGTATTGCAATTTTACTGCAGACGGCGCTACTGCGGATGATAGAGAATTCCATAAtgtttttgatgaaattggCATAGATTTACAATTACCCATTTTGGTGGAAAAGTATTTCCACATAAGTGTAGAAAAACTGAAATATGCCAAAATGTGTGATCAATGTTTAAATCACCTTATCGAACTGTTTGATTTAGATGAACATGGAAAAAGCCAAAATGCAGAATTAACAAAACCAAAACTGGCAGAAACCCAAACATTGCAGGAAGTAAAACAAATTGATAAATCTATCAATGTGTCTACAGAAATAGATCAATATGTACTTAACAATGAAATTGAATCGGGTACTGTTATAACTAAAGAAATAGACCATCAAGGGGGATTTGATAATGAAATTGAACCGGGAGCGGCTATAATTAGTAAAATTTTACCCTTAGTTGATGAtggtaatgataataatgaagaAAACCTAATTGTAATTAAGAAATTCAAGTCGAGTATAGATGAGATTGATAATACAGTAGAGCTTAACGAAGCCAGTGATTGTCAATCGTTTGATGatgaaaattttgtaatagAAGAACTGGAAGAAAATTCCGATGATTTTGAACTTATTTCCAATTCCGAGGATAACGACCAATCGcaaaatgaagaagaactttGCTTTGAAATAATTGATGAAAATGAGCCACTAACCACAGCTCAAACTAAATTTACTACAAATAATCTTATTGTGGAAGgTCCTTGCTCTCAGGATTATGATTTAGTAGATATTAATTCTTATTTGGATTCAGTTTTAACGACAAAGTTTGAAGCTTTAGATCTACAATGGACCAATACATGCATGTTTTGTAGCTGTATGTATAAGACACTAAAGGAATTGCTCAAGCACTCTTGCGTAACTAAACAAATTGATGAAAATAACTTCAAATGCCTGCTAAAAGACTGCAATGTTGAATGTATTAATATAGAGTCTCTGGGTAGACATTTGGTAATAAGACATTACAATGCTTTGGACAGTTTAAATGTGTATGGAAGTTGCCCTGAATGTCAATTGACATTTTCCAATTTCCCTCTTTACAATAAACATTCGTGTTGTCGTCATTTAAAACGCAAAGTGGGTGTagtgaatttttgtaaatattgtaaattggAGTTTCCTTCATTGAAACGatatttttttcatatgcaatttcatttaaacaagTATCGACCGAAAGTGTGTTTGATTTGTGAAATGGCTTTTAATAATAGCAATGACTTCTTCGAGCATGTTCAATACAGTCATGAACCAGAAAATGCTTTGGCCTGCAAAAAATGTGATCGTTTCTTTAGGGATATAAACACTTATGAATCTCATGTTAAGAAGCATAATTCCAATGGTGGTTATCATTGTGCACATTGCAATCAACGATATGAACATCGTCACAATTTAATACTTCACTTGGAAGTGTATCATAATCGTAGAGCAAAACGATTTCGTTGcgaattttgtaaaaaagtgtttatgggtagaaaaaattatcataaacATTTGCGGTTTCATTGGCAGGAAAGGGAAGTTCACAGTTATATATGTTCTCAATGTGGTTTAGTTAGCAGTAATAATGAAGATTTAAATAATCATATAGATTCTACCGCTACATGCTCGGAAGCCCCTATTAAGGAACAGATCTTGTCAGTTGTGTATTTTTGTGAAAATTGCGGCATTGAGTTTGATACAGTTGAACATTTATGTAAACATCGTTTATCACCCGAACATAATGATCTATTGTTTAGATGTGTGTTGTGTGagaaatttttcaatgaatttCGTTGTGTACGCAGTCATATGAAAACTCATAAAAACTATTTAAGTTGGTTAGAAACTTTTCCAGTGTGTAGACTGTACGTCTGCAATATTGGGGAATGTCGAGACGCTTATCCGGTATGGACTTCTTTATATTATCACAAAAAACGGCCCCACGTTAAGGGTGTGAAAAATAAAgacaatattaataaatttgtgtgtCAATTCTGTAAGAAAGAATGTCCTACGAAAATGTCATTAGCTGTTCATGTGGCCCGTAGTCATAATACGAAAAACGTTAAATGTTCATATTGTAATAATTCGTATAAAGATGAGAAGGCGTTACAAGGTCACATTGATTATATGCATGTACCGATCAGATGTGATCAATGCTTTAAAGTAATAAAGAATCGTCGAAATTTTGAAACTCATGAACGTATCGTACACAAGCGAACGCAACGTTACTTCTGCAGTCACTGTTCCAAAGGTTTCTATCATAAAAGTGAAATGGAAAATcatgtgaaaaatattcacaCCGATGTCGTCTACACCTGTTCACAATGCTTCTTTACCACCAATTatgaaaattctttaaagatTCATGTGGCCAAACATAATAATGAACTGGCATTTCAGTGCAAATCTTGTCCGCAATCATTTACACGCAAACATGTACTACAAATGCATATGCGTAGACGTCATCGCAGCAAAGAgCTAATTTGTAATGATTACATTGAATCGGGTTGTGAAGAAGCTTTTGTTACACGCGGTGATCTGAAGAGGCACATAGAGAGAGAACATCACCATAATCCGGTTGGAGAGTTGAAGGGAAAGAATAGCCGCAAAAAagccaaaaaaataaaaactagtGTTGTCTTAATTGAAGAGAATGAAGAGAGTGCAAATGAACAAGAGGAGGAGGGTGTGCTGATAGAAGAAATGTCTAGTGGATCTCTAGATTATGATGTCAATGATGAGGCTGATGGCAAAAATGTAGGTATAACAATAGAATATCTAGATGATCATGCGGAAAATAAGTaa
Protein Sequence: MATKDTCLYCNFTADGATADDREFHNVFDEIGIDLQLPILVEKYFHISVEKLKYAKMCDQCLNHLIELFDLDEHGKSQNAELTKPKLAETQTLQEVKQIDKSINVSTEIDQYVLNNEIESGTVITKEIDHQGGFDNEIEPGAAIISKILPLVDDGNDNNEENLIVIKKFKSSIDEIDNTVELNEASDCQSFDDENFVIEELEENSDDFELISNSEDNDQSQNEEELCFEIIDENEPLTTAQTKFTTNNLIVEGPCSQDYDLVDINSYLDSVLTTKFEALDLQWTNTCMFCSCMYKTLKELLKHSCVTKQIDENNFKCLLKDCNVECINIESLGRHLVIRHYNALDSLNVYGSCPECQLTFSNFPLYNKHSCCRHLKRKVGVVNFCKYCKLEFPSLKRYFFHMQFHLNKYRPKVCLICEMAFNNSNDFFEHVQYSHEPENALACKKCDRFFRDINTYESHVKKHNSNGGYHCAHCNQRYEHRHNLILHLEVYHNRRAKRFRCEFCKKVFMGRKNYHKHLRFHWQEREVHSYICSQCGLVSSNNEDLNNHIDSTATCSEAPIKEQILSVVYFCENCGIEFDTVEHLCKHRLSPEHNDLLFRCVLCEKFFNEFRCVRSHMKTHKNYLSWLETFPVCRLYVCNIGECRDAYPVWTSLYYHKKRPHVKGVKNKDNINKFVCQFCKKECPTKMSLAVHVARSHNTKNVKCSYCNNSYKDEKALQGHIDYMHVPIRCDQCFKVIKNRRNFETHERIVHKRTQRYFCSHCSKGFYHKSEMENHVKNIHTDVVYTCSQCFFTTNYENSLKIHVAKHNNELAFQCKSCPQSFTRKHVLQMHMRRRHRSKELICNDYIESGCEEAFVTRGDLKRHIEREHHHNPVGELKGKNSRKKAKKIKTSVVLIEENEESANEQEEEGVLIEEMSSGSLDYDVNDEADGKNVGITIEYLDDHAENK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115229;
90% Identity: iTF_01115229;
80% Identity: -