Ochl010625.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020530.1:56603338-56609523[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.2e-05 0.0027 18.5 4.5 1 23 508 530 508 530 0.97 2 18 5.7e-05 0.0048 17.7 0.3 1 23 536 558 536 558 0.97 3 18 5.5e-05 0.0045 17.7 0.6 1 23 564 586 564 586 0.98 4 18 3.7e-05 0.0031 18.3 2.2 1 23 592 614 592 614 0.96 5 18 3.7e-05 0.0031 18.3 4.6 1 23 620 642 620 642 0.99 6 18 0.00012 0.01 16.6 5.8 1 23 648 670 648 670 0.97 7 18 1.6e-06 0.00013 22.5 4.5 1 23 676 698 676 698 0.98 8 18 3.6e-06 0.0003 21.4 1.8 1 23 704 726 704 726 0.97 9 18 0.0001 0.0084 16.9 6.7 1 23 732 754 732 754 0.97 10 18 7.3e-06 0.0006 20.5 6.7 1 23 760 782 760 782 0.98 11 18 9.3e-06 0.00077 20.2 4.5 1 23 788 810 788 810 0.98 12 18 5.9e-05 0.0049 17.6 8.3 1 23 816 838 816 838 0.98 13 18 9.5e-06 0.00079 20.1 6.6 1 23 844 866 844 866 0.97 14 18 1e-06 8.6e-05 23.2 7.7 1 23 872 894 872 894 0.98 15 18 0.00033 0.027 15.3 9.5 1 23 900 923 900 923 0.95 16 18 0.00052 0.043 14.7 0.5 1 23 929 951 929 951 0.97 17 18 0.011 0.88 10.5 4.9 1 23 961 983 961 983 0.98 18 18 1.4e-05 0.0012 19.6 1.6 1 23 989 1012 989 1012 0.96
Sequence Information
- Coding Sequence
- ATGTTAAAGGCGATTGAAGAAGATGGCAATACTGGTGCAGTAAAGCCATCAACATGCGGCTCGGCAACATCATTttcatcaacagcaacaataacctCTAATGAAGCCTCGATTACAACCGCCACCGTAACAAGCACTTTAGTAGAAAATTCTCAGCCCTCCAGCGGgtccacaataacaacaataacagggTCACAGTTGGAATCATCATTTGCCTATTCTTGCTTCAATGAGTTTATCAACAGCCACAGAGTTGCTGCCATCGTTGCAGCCCCATCATCAGCCTTTCTACATCTTGGTCGCAGTACAACTGTTCCGGTTAATATTAATCCATACAAtaccactaccactaccaccaccaccctaTTGACCCAACATCCACAAAATTTGGGTAAATATTTGGTGATAACCAATTTTGCAGAAAATTCACCAGAACCAGCGGCTTggaaagaaacatttatatataatattggtGAGAGGGATGCTGTAAGACAAGAAACagtaaacattttatcaagTAGAAGTGCCTCATTACATTATAACATAACCACTAAACCGGTGGCAGCGCACGTAGCAAATTGTAGTAGCGTAGTTGCAGTGGCaacactgcaacaacaacaagcacaaATGTTGGCCAACACTGCTTTGGGTGCACAACAACTGCCGAATGGCACTATATTAACAGCACAAACACCCCAACAGCAACTTCATGCTAACGATcgtcatcaacaacaacaacaacaacaacagcaacagcaccaacaacaattacatGTTCATgcTTTGAATACTAATGATAACGATAACCGTCAACGGcaacaccaacagcaacaacagcaacagcaacatgtAGCTTTGCTACAGCAAGATGCAATTAAGGATGAGAAGCCGTTTATATCGAATggtaaaataacaacaacagtgcCTAGTAGtcaacatcagcaacaacaacaacaacaaatcataaTGCAACATGTGTCAGCATCATCCGCAGCCACGCCAGCTTCCACTTCAACACTTACCCTTGGCACACCCAAAACGGAAATCAAAGAAGATACAAGTGTTGTGGTGGGCGGTAAAACCTATTCGGGCATAGAAATGTACAAAGTTAACATAGAGGATATATCCCAACTATTCACTTATCATGAAGTATTTGGCAAAATGCATGGTGACGCTAATTTATCGAATGCAGCTGCAACTCATGCTATACCGGGTGCAATGGCCACTAATATGTCCAATGCTGGTGTAAATAATTGTACTAATGTGACCGGTGTAACAACTGCTCCAGTATCTACATCAACCACAAATAGTAGTTTGGGAGAGACAGCAGCACCAACAACCAGTTCGGCAATGCGTGTAGCCATTACTACGAATTGTGGCAATACTCCTGTAATCAATGTATCCACCACGGGTACAGCTACAGGCTTGATTATGCCCAAAATGGAAAGTGGGCTAAATGCGGTAGATGAATTGCCACCACCGATGATAGCCTCAGACAATACATTGGTTCCAGCTGGCAATCATGAATGTGACATATGTCATAAAGTGTTTAGTTTTCGCTATCAACTAATTGTGCATCGTCGCTATCACAGTGAACGTAAACCGTTTAATTGTCAGGTGTGCGGTCAGGGCTTTAACACATCAACCGATTTAACCAATCATGGTAAAATTCATGTAAACTGCACCATGTTTACCTGTTTGGTATGTTTCAATGTGTTTGCCAATAATGCATCGTTGGAGCGGCACATGAAACGGCACTCCACGGATAAACCGTTCGCCTGCACCATATGCCAGAAGACATTCGCACGCAAAGAACATTTGGATAATCATTTTCGGGCACATACCGGCGTCACGCCATATCGTTGTCAATATTGCGCCAAGACATTCACCCGTAAAGAACATATGGTCAATCACGTGCGCAAGCATACGGGTGACACACCTCATCGTTGTGATATTTGTAAGAAAACATTCACCCGGAAAGAACATTATGTTAATCATTACATGTGGCATACTGGAAATACTCCACATGAGTGTGAATATTGTGGCAAAAAATATACACGCAAGGAACATTTAGCCAATCATTTACGTTCGCACACTAATGAGACGCCGTTTCGTTGTGAAATTTGTGGTAAAAATTTCGGACGTAAAGAACATTTCACCAATCATATTCTGTGGCACACAGGTGAAACTCCTCATCGTTGTGATTTCTGTTCGAAGACATTTACACGCAAAGAGCATCTTTTGAATCATGTACGGCAACATACTGGCGAATCGCCACATCGCTGTTCATATTGTTCGAAAACATTTACGCGCAAAGAACATCTGGTCAATCACATACGACAACATACCGGCGAAACACCATTCAAGTGCACCTATTGCACCAAAGCATTTACACGCAAAGATCACATGATCAATCACGTGCGCCAGCATACCGGTGAGTCGCCACACAAGTGTACGTTCTGTACGAAGACTTTCACAAGGAAGGAGCATTTGACGAATCATGTACGCCAGCATACTGGGGAATCGCCACATCGTTGCACCGTTTGCAAGAAGACGTTTACACGTAAAGAACATCTTAACAATCATGTGCGGCTACATACGGGGGATTCACCGCATAAATGTGAATACTGTCAAAAGACGTTTACGCGCAAAGAGCATCTCAATAATCATATGCGCCAGCATTCGGGTGATAATCCACATTGCTGTAATGTCTGCAACAAACCCTTTACACGCAAGGAGCACTTAATCAATCACATGTCTCGTTGCCATACAGGTGATCGTCCCTTTACTTGTGAAACGTGCGGCAAATCGTTCCCGCTCAAGGGTAATCTGTTGTTCCACGCACGCAGCCATATGAAGGGTCAGGAGATGGAGCGTCCTTTCTCGTGCGAGAAGTGTGCCAAGAAGTTTATATGCAAAGGTCACTTGGTTTCGCATATGCGTTCACATTCGGGTGAAAAACCGCACGCTTGCACATTATGCAGCAAAGCGTTTGTAGAGCGTGGCAACTTGAAGCGACACATGAAAATGAATCATCCGAACGCTCCGATGCCAGCACCACCAGTGCCTCATCCCATTATACCAGCCGGTGTTTTGGCCAACGTTAAGCAGGAAATCAAACCGGTCATCAATGAATTGATGCCACACCAACAAACAAGTGCAGCACCAACAATGCATACTATACAGCAAATAACATCAGGGGCAGCAGCAGCGGCGGCGGCAGCCCCAGCTAATTCTGCACAGTTGCCACCGGGTTTGGTGCCTTTAGTTACTTCCACCATAACATCGCTTAATAGTcaaaagcaacagcaacaacaactacaacagcaacaatcgCAACAaatgcagcagcaacaacaacgaccAGGTGTTGCTGTTACCCATCAACAAGCTGGCTTAGTAGCAGCAGCTACTGCTCACCAACAACAAgtacagcagcaacaacaacaacagcatcaacAATTATTACAACTTTCCATACAACAAGCAGCAGCTCATCATCAATTGCAGCACCAGCAACAAGAAACACAAcgtcaacatcaacaacaccaacaccaacaacagccACCACCACCCCAACAGCAACAAGCAAGCCAGCCGtcacatcatcaacaacagcaacaacggCAAGCGCAACAAGTAACAAATGCTAATAATCAACAACCAcctcaacagcaacagcagcagcaaaacCTTCAACAacctcaacaacaacaacaaccacaaccacCACAAGTGCCAATTGCTTTAATACAAACTGATCCGGAAGCTTTGGCGCGGGCTGCCATGCAACAGCTGCAACATATACCCTCCAATGTGGAACAACATCCGGTAGTGTACTAA
- Protein Sequence
- MLKAIEEDGNTGAVKPSTCGSATSFSSTATITSNEASITTATVTSTLVENSQPSSGSTITTITGSQLESSFAYSCFNEFINSHRVAAIVAAPSSAFLHLGRSTTVPVNINPYNTTTTTTTTLLTQHPQNLGKYLVITNFAENSPEPAAWKETFIYNIGERDAVRQETVNILSSRSASLHYNITTKPVAAHVANCSSVVAVATLQQQQAQMLANTALGAQQLPNGTILTAQTPQQQLHANDRHQQQQQQQQQQHQQQLHVHALNTNDNDNRQRQHQQQQQQQQHVALLQQDAIKDEKPFISNGKITTTVPSSQHQQQQQQQIIMQHVSASSAATPASTSTLTLGTPKTEIKEDTSVVVGGKTYSGIEMYKVNIEDISQLFTYHEVFGKMHGDANLSNAAATHAIPGAMATNMSNAGVNNCTNVTGVTTAPVSTSTTNSSLGETAAPTTSSAMRVAITTNCGNTPVINVSTTGTATGLIMPKMESGLNAVDELPPPMIASDNTLVPAGNHECDICHKVFSFRYQLIVHRRYHSERKPFNCQVCGQGFNTSTDLTNHGKIHVNCTMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRAHTGVTPYRCQYCAKTFTRKEHMVNHVRKHTGDTPHRCDICKKTFTRKEHYVNHYMWHTGNTPHECEYCGKKYTRKEHLANHLRSHTNETPFRCEICGKNFGRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCSKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMINHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTVCKKTFTRKEHLNNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSGDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHARSHMKGQEMERPFSCEKCAKKFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPAPPVPHPIIPAGVLANVKQEIKPVINELMPHQQTSAAPTMHTIQQITSGAAAAAAAAPANSAQLPPGLVPLVTSTITSLNSQKQQQQQLQQQQSQQMQQQQQRPGVAVTHQQAGLVAAATAHQQQVQQQQQQQHQQLLQLSIQQAAAHHQLQHQQQETQRQHQQHQHQQQPPPPQQQQASQPSHHQQQQQRQAQQVTNANNQQPPQQQQQQQNLQQPQQQQQPQPPQVPIALIQTDPEALARAAMQQLQHIPSNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00384712;
- 90% Identity
- iTF_00384712;
- 80% Identity
- -