Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453289.1:21531271-21538207[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9e-05 0.002 18.5 4.5 1 23 523 545 523 545 0.97

2 18 5.2e-05 0.0035 17.7 0.3 1 23 551 573 551 573 0.97

3 18 5e-05 0.0034 17.7 0.6 1 23 579 601 579 601 0.98

4 18 3.4e-05 0.0023 18.3 2.2 1 23 607 629 607 629 0.96

5 18 3.4e-05 0.0023 18.3 4.6 1 23 635 657 635 657 0.99

6 18 0.00011 0.0076 16.6 5.8 1 23 663 685 663 685 0.97

7 18 1.5e-06 0.0001 22.5 4.5 1 23 691 713 691 713 0.98

8 18 3.3e-06 0.00023 21.4 1.8 1 23 719 741 719 741 0.97

9 18 9.2e-05 0.0063 16.9 6.7 1 23 747 769 747 769 0.97

10 18 6.6e-06 0.00045 20.5 6.7 1 23 775 797 775 797 0.98

11 18 8.5e-06 0.00057 20.2 4.5 1 23 803 825 803 825 0.98

12 18 5.4e-05 0.0036 17.6 8.3 1 23 831 853 831 853 0.98

13 18 8.7e-06 0.00059 20.1 6.6 1 23 859 881 859 881 0.97

14 18 9.5e-07 6.4e-05 23.1 7.7 1 23 887 909 887 909 0.98

15 18 0.0003 0.02 15.3 9.5 1 23 915 938 915 938 0.95

16 18 0.00047 0.032 14.7 0.5 1 23 944 966 944 966 0.97

17 18 0.0097 0.66 10.5 4.9 1 23 976 998 976 998 0.98

18 18 1.3e-05 0.00089 19.6 1.6 1 23 1004 1027 1004 1027 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9e-05	0.002	18.5	4.5	1	23	523	545	523	545	0.97
2	18	5.2e-05	0.0035	17.7	0.3	1	23	551	573	551	573	0.97
3	18	5e-05	0.0034	17.7	0.6	1	23	579	601	579	601	0.98
4	18	3.4e-05	0.0023	18.3	2.2	1	23	607	629	607	629	0.96
5	18	3.4e-05	0.0023	18.3	4.6	1	23	635	657	635	657	0.99
6	18	0.00011	0.0076	16.6	5.8	1	23	663	685	663	685	0.97
7	18	1.5e-06	0.0001	22.5	4.5	1	23	691	713	691	713	0.98
8	18	3.3e-06	0.00023	21.4	1.8	1	23	719	741	719	741	0.97
9	18	9.2e-05	0.0063	16.9	6.7	1	23	747	769	747	769	0.97
10	18	6.6e-06	0.00045	20.5	6.7	1	23	775	797	775	797	0.98
11	18	8.5e-06	0.00057	20.2	4.5	1	23	803	825	803	825	0.98
12	18	5.4e-05	0.0036	17.6	8.3	1	23	831	853	831	853	0.98
13	18	8.7e-06	0.00059	20.1	6.6	1	23	859	881	859	881	0.97
14	18	9.5e-07	6.4e-05	23.1	7.7	1	23	887	909	887	909	0.98
15	18	0.0003	0.02	15.3	9.5	1	23	915	938	915	938	0.95
16	18	0.00047	0.032	14.7	0.5	1	23	944	966	944	966	0.97
17	18	0.0097	0.66	10.5	4.9	1	23	976	998	976	998	0.98
18	18	1.3e-05	0.00089	19.6	1.6	1	23	1004	1027	1004	1027	0.96

Sequence Information

Coding Sequence: ATGTCGTCTGCAAGCAATGTTGAGGCGATTGAAGAAGATGGTAATACTGGTGCAGTAAAGCCATCAACATGCGGCTCGGCAACATCATTttcatcaacagcaacaataacaactaatgGAACCTCGATTACAACCGCCACCGTAACAAGCACTTTAGCAGAAAATTCTCAGCCCTCCAGCGTGtccacaataacaacaataacagaaaCACAGTTGGAATCATCATTTGCCCATTCTTCTTCCAATGAATTTATCAACAGCCACAGAAGTCATACGATTAAATTATTGTCTCCTTCCGTTATTACTGCTCACAATCATTCAACAGCTGCTGTCATTGAGGCAGATCCATCATCAGCCTTTCTACATCTTGGTAGCAGTACAACTGTTCCGGTTAATATTAATCCACACAATACAActactaccaccaccaccaccaccctaTTGACCACACATCCACAAAATTTGGGCAAATATTTGGTGATAACCAATTTTGCAGAAAATTTACCAGGACCAGCGGCTGGtcaagaaacatatatatataatgttggTGGGAGGAATGCTGTAAGACCAGAAACagtaaacattttatcaagTAGAAGTGCCACATCACATTATAACATAATCACTAAACCGGTGGCAGCACACGTATCAAATTGTAGTAGCGTAGTTGCAGTGGCAacactgcaacaacaacaagcacaAATGTTGGCCAACACAGCTTTAGGTGGACAACAACTGTCCAATGGCACTATATTAACAGCACAAACACCCCAACAGCAACTTCATGGTAACGATcgtcatcaacaacaacagcaacagaaccaacaacaaatacatgtACAtgcTAATGATAACGATAACCGTCAACGGcaacaccaacagcaacaacaacagcaacatgtAGCTTTGATACAGCAAGATGCAATTAAGGATGAGAAACCCTTTATATCGAATggtaaaataacaacaacagtaccTAGCAGTcaacatcagcaacaacaacaaatcattaTGCAACATGTATCAGCATCATCGGCAGCAACGCCAACTTCCACTTCAACACTTACCCTTGGCACACCCAAAACGGAAATCAAAGAAGATACAAGTGTTGTGGTGGGTGGCAAAACCTATTCGGGCATAGAAATGTACAAGGTTAACATAGAGGATATATCCCAACTATTCACTTATCATGAAGTATTTGGCAAAATGCATGGTGACGCTAATTTATCGAATGCAGCTGCAGCACATGCTATACCGGGTGCCATAGCCACCAATATGGCTAATGCTGGTGTAAATAATTGTACTAATGTGACCGGGATAACAACTGTTTCAGTATCTACATCAACCACAAATAGTAGTTTGGGAGAGACAGCAGCACCAACAACCAGTTCGGCATTGCGTACAGCTATTACTACGAATTGTGGAAATTCTCCTGTAATCAATGTATCCACCACGGGTACAGCTATAGGCTTAATTATGCCCAAAATGGAAAGTGGCCTAAATGCGGTAGATGAATTGCCACCACCTATGATAGCTTCAGATAATACATTGGTTCCAGCCGGCAATCATGAATGTGACATATGTCATAAAGTGTTTAGTTTTCGCTATCAACTGATTGTGCATCGTCGCTATCACAGTGAACGTAAACCGTTTAATTGTCAGGTGTGCGGTCAGGGTTTTAATACATCAACCGATTTAACCAATCATGGCAAAATTCATGTAAACTGCACTATGTTTACCTGTTTGGTATGTTTCAATGTGTTTGCCAATAATGCATCGTTGGAACGGCACATGAAACGGCACTCCACGGATAAACCGTTCGCCTGTACCATATGCCAGAAGACATTCGCACGCAAAGAACATTTGGATAACCATTTTCGGGCACATACCGGCGTCACGCCATATCGTTGTCAATATTGCGCCAAGACATTCACCCGTAAAGAACATATGGTCAATCATGTGCGAAAGCACACGGGGGACACACCTCATCGTTGTGATATTTGTAAGAAAACATTCACACGGAAAGAACATTATGTTAATCATTACATGTGGCATACTGgAAATACTCCACATGAGTGTGAATATTGTGGCAAAAAATATACACGCAAAGAACATTTGGCCAATCACTTACGTTCGCACACTAATGAGACACCGTTTCGTTGTGAAATTTGTGGTAAAAATTTCGGACGTAAGGAACATTTCACCAATCATATTCTGTGGCATACAGGTGAAACTCCTCATCGTTGTGATTTCTGTTCGAAGACATTTACACGCAAAGAGCATCTTTTGAATCATGTACGCCAACATACTGGCGAATCACCACATCGCTGTTCATATTGTTCGAAAACATTTACGCGCAAAGAACATCTGGTCAATCACATACGGCAACATACCGGCGAAACACCATTCAAGTGCACCTATTGCACCAAAGCATTCACGCGCAAAGATCACATGATCAATCACGTGCGCCAGCATACCGGCGAGTCGCCACACAAGTGTACGTTCTGTACGAAGACTTTCACACGGAAGGAGCATTTGACGAATCATGTACGCCAACACACTGGGGAATCGCCACATCGTTGCACCGTTTGCAAGAAGACGTTTACACGTAAAGAACATCTCAACAATCATGTGCGGCTACATACGGGGGACTCACCGCATAAATGTGAATACTGTCAGAAGACGTTTACGCGCAAAGAGCATCTCAATAATCATATGCGCCAGCATTCGGGTGATAATCCACATTGCTGTAATGTCTGCAACAAACCCTTTACACGCAAGGAGCACTTAATCAATCACATGTCTCGTTGCCATACAGGTGATCGTCCCTTTACTTGTGAAACGTGCGGCAAATCGTTCCCGCTCAAGGGTAATCTGTTGTTCCATGCACGCAGCCATATGAAGGGTCAAGAGATGGAGCGTCCATTCTCGTGCGAGAAGTGTGCCaagaaatttatatgcaaaGGTCACTTAGTTTCGCATATGCGTTCACATTCGGGTGAAAAACCGCATGCTTGCACATTATGCAGCAAAGCCTTTGTAGAGCGTGGCAACTTGAAGCGACACATGAAAATGAATCATCCGAATGCTCCGATGCCGGCACCACCAGTGCCTCATCCCATTATACCAGCCGGTGTTTTGACCAATGTTAAGCAGGAAATCAAACCGGCAAATGAATTGaTGCCACACCAACAAACAAGTGCAGCACCAACAATGCATACTATACAGCAAATAACATCAGGGGCAGCAGCGGCGGCAGCCCCAGCTAATTCTGCACAGTTGCCACCGGGTTTGGTGCCTTTAGTTACTTCCACCATAACATCGCTTAATAgtcaaaagcaacaacaactacaacagcaacaaatgcagcagcagcaacaacaacaacccgGTATTGCTGTTACCCATCAACAAGCTGGCTTAGTAGCAGCAGCTACTGCTCACCAACAACAagtacagcagcagcaacaacaacaacaacagcatcaacaATTATTACAACTGTCTATACAACAAGCAGCAGCTCATCATCAATTGCAGCACCAGCAACAAGAAACACAAcgtcaacatcaacaacaccaacaacaacaacagccaccACCACCCCAACAGCAACAAGCAAACCAGCCGtcacatcatcaacaacagcagcaacggCAAGCGCAACAAGTAACAAATGCTAATAATCAACAACCCcctcaacagcagcagcaaaacCTTCAACAAcctcaacagcaacaacaacaaccgcaaGTGCCAATTGCTTTAATACAAACTGATCCAGAAGCTTTGGCGCGGGCTGCCATGCAACAGCTGCAACATATACCCTCCAATGTGGAACAACATCCGGTAGTGTACTAA
Protein Sequence: MSSASNVEAIEEDGNTGAVKPSTCGSATSFSSTATITTNGTSITTATVTSTLAENSQPSSVSTITTITETQLESSFAHSSSNEFINSHRSHTIKLLSPSVITAHNHSTAAVIEADPSSAFLHLGSSTTVPVNINPHNTTTTTTTTTLLTTHPQNLGKYLVITNFAENLPGPAAGQETYIYNVGGRNAVRPETVNILSSRSATSHYNIITKPVAAHVSNCSSVVAVATLQQQQAQMLANTALGGQQLSNGTILTAQTPQQQLHGNDRHQQQQQQNQQQIHVHANDNDNRQRQHQQQQQQQHVALIQQDAIKDEKPFISNGKITTTVPSSQHQQQQQIIMQHVSASSAATPTSTSTLTLGTPKTEIKEDTSVVVGGKTYSGIEMYKVNIEDISQLFTYHEVFGKMHGDANLSNAAAAHAIPGAIATNMANAGVNNCTNVTGITTVSVSTSTTNSSLGETAAPTTSSALRTAITTNCGNSPVINVSTTGTAIGLIMPKMESGLNAVDELPPPMIASDNTLVPAGNHECDICHKVFSFRYQLIVHRRYHSERKPFNCQVCGQGFNTSTDLTNHGKIHVNCTMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRAHTGVTPYRCQYCAKTFTRKEHMVNHVRKHTGDTPHRCDICKKTFTRKEHYVNHYMWHTGNTPHECEYCGKKYTRKEHLANHLRSHTNETPFRCEICGKNFGRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCSKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMINHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTVCKKTFTRKEHLNNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSGDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHARSHMKGQEMERPFSCEKCAKKFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPAPPVPHPIIPAGVLTNVKQEIKPANELMPHQQTSAAPTMHTIQQITSGAAAAAAPANSAQLPPGLVPLVTSTITSLNSQKQQQLQQQQMQQQQQQQPGIAVTHQQAGLVAAATAHQQQVQQQQQQQQQHQQLLQLSIQQAAAHHQLQHQQQETQRQHQQHQQQQQPPPPQQQQANQPSHHQQQQQRQAQQVTNANNQQPPQQQQQNLQQPQQQQQQPQVPIALIQTDPEALARAAMQQLQHIPSNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01114404;
90% Identity: iTF_01114404;
80% Identity: -