Ochl004786.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963971445.1
- Location
- OZ020529.1:56335395-56337976[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-110 1.9e-105 352.9 27.8 1 299 30 326 30 327 0.88 2 2 0.039 9.3e+02 -0.7 4.0 220 245 355 380 329 401 0.47
Sequence Information
- Coding Sequence
- ATGGACGTTTCCAATGCAGTGGGTAGGCGCCGAGTAAGTTCTCGGGTAAATGCAGAAGATCAAGCATTGGATCAAATAGCTAAAGAGGCTGAAGCTCGTTTAGCGGCGAGGCGTCAAGCGAGAGCAGAGGCTAGAGAAATACGTATGCGTGAGTTGGAGAGACAGCAGAAGGAACAGGAACAAAATGCTGATCGTGTCTTCGATTTGCATACAATGACCTCAGGCATCGATCAAATATCTCGCACTCGTCTAGGCCTGGGTGGTTTGGGTGGTTCAACTGTTAGTACTTTACTCCCTCCTGTACGTGGTAGTTCCATGTCTTCCCGGCGCAGTAGTGAGGATTCCCTTGAGGATGAAGGACGCAGTTTGAGAGATATACGCCATGAATTAAGGGATATAGAGGAACGATTTCGTAAAGCCATGATTGCTAATGCACAACTTGATAACGAACGGGCTTCCCAGACGTACCAAATCCAGCTGCTTAAGGATAAACTGGAAGAAATGGAAGAATCCTACGCCCAATTACAGCGTGAATTCAAAGAAAAATCCCGTGACTATAATGCTCTGAAGCGTACATTAGATAAGTTGAGCGAAGAGTTAAAGTTGGTGCACGGCCAGTTAAGTGAACGCGACACGCTAATAGCAGAACAGGGTTTAACAATCGTTTTAATCGAAAATGAAGATGGCACCGACGCCAAGAGAGCTCTAGTCAGTATTGAAAATGCCGAAATGTTAGCTTCTGTGCGGGGTTCATTGGATGTTCGActtaaaaagtttaatgaggaaaaacaaaaactccAGGCAGAAGTTGTGCAGTTGCAAGAAAAATTAGAGtcttataaaaattgtggAAAGAGTCGCAGTAATACCACAAATGGTCCTTCTGATTTGGAAGATGACTATGAAGTTCAACGAGAAGCCAACAAGGTTATATTGgattacaaatacaaattacaaaaagcTGAACAGGAAATTGCCAATTTGCAAGCGAGTTTGGCACGTTCCGAAACCCAAGTAATACGATACAAGAGTACCGCCGAAGCTGCTGAGAAAGCTGAAGCCGAGTTAAAAATTGAACGAAGAAAACTACAAAGAGAgAATCGCGAAGCTATGGAAAAATTGGAAGAGTTGGAAACATCAAATAACCATTTGTTGAAGCGTTtggataaattaaaaaatgccaAAAGTGCTTTACTCAAAGACCTTTGA
- Protein Sequence
- MDVSNAVGRRRVSSRVNAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDLHTMTSGIDQISRTRLGLGGLGGSTVSTLLPPVRGSSMSSRRSSEDSLEDEGRSLRDIRHELRDIEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEMEESYAQLQREFKEKSRDYNALKRTLDKLSEELKLVHGQLSERDTLIAEQGLTIVLIENEDGTDAKRALVSIENAEMLASVRGSLDVRLKKFNEEKQKLQAEVVQLQEKLESYKNCGKSRSNTTNGPSDLEDDYEVQREANKVILDYKYKLQKAEQEIANLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115009;
- 90% Identity
- iTF_01115009;
- 80% Identity
- -