Ochl018270.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- bab1_1
- Assembly
- GCA_963971445.1
- Location
- OZ020532.1:5541907-5543713[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-18 2.6e-14 53.0 0.0 1 43 54 97 54 99 0.95 2 2 1.6 4.3e+03 -2.1 0.7 3 13 191 201 189 213 0.79
Sequence Information
- Coding Sequence
- ATGTTGGAAAACACACACGCTTGGATGAGTTCAGGTCCATCGATTGCAGCAGATAGTTATCAATATCAGTTACAATCCATGTGGCAAAAATGTTGGAACACCAATCAAAGTTTAATGCATCACTTGAGGTTTCGTGAGAGGGGACCACTGAAATCATGGCGACCCGAAACTATGGCCGAGGCAATTTTTAGCGTATTAAAGGAGGGCCTCTCACTATCGCAAGCGGCCCGCAAATACGACATACCGTATCCCACGTTTGTTCTGTATGCCAATCGAGTTCACAATATGTTGGGGCCATCGATCGATGGTGGACCGGATCTGCGACCCAAAGGTAGAGGTCGTCCGCAACGTATTTTACTTGGTATCTGGCCAGATGAACATATCAAAGGTGTTATTAAAACGGTTGTCTTTCGTGATGCCAAAGATTTGAAGGAGGAAACCTTTACTCACTTGCCATACGGACGACATTCGcCAGTGTTTCCTTTTCAAGATAGCACTTTAGGCTACGGTGGCCCAGGAGGTCAATGTGCCAACGGCATTCCTACACCCACGGGTGATCAAATGACACAAGAAGCTACAGCGGCCGCTGTTGCGGCGGTGGCTCATAACTTTCGACAACAAATGCAAATGGCAGCCGCTCAAcaccaacatcaacaacacaCAGACAGCCTAGGCAGTGCCGGTCTTTTCAGTATGCCGCCGCATTTAGCAAGTGCAGCTGCCGTGGCTCGGGGAGCCGCCAGTCCACTTACGGGTCCGCCTGGTCCTGGTGGTTTAATGCTACCAAAGGCGAGTATCTCACCTGCCCTAAGTACGACATCAAATCCAAGTGGTGGTGGTGTCGTTGTTGGACCACGCCATCCACCTTCTCCCTGTGCTTCTGCATTGTCGAGTATGCACCAATTGGCACCCGGCATGGCGGTCGCTCTACAAATGGTCGGCGGTCCCGGTCGTTGTGAAACTGCAACATTGCTgagtcaacaacaacaacaacatcaacagcagCTGCAGCAATTACACTTGCAACAACAGCATGCAGCTCTACATCATCAGCAGCAAAAACATTCTCACCAGCATCAGCAAATGCTTTTCGGTACAAGTTCCCTGGGGCATCAGTCAAGTACCCCAACAGCGATGGCAACATCATCGATGGCTTCGCCCCAGCAAATATCCACAACAAAATCTTCCAGCTCATCGATTTCATCATCGCCAGAACGTATGCGACACAGTATGCCGGTCGATATGCCACTTCGATCATCGTTCACTGAATTTGGTTTCGATTTGGGACACAATAAAAGCTCCCGATCATTTTCTCCTGCGCGTCTCTTCCCAGACGACATTGCCGAACTAGTAGGTGTAACACCAGCATCAAGAAATCATCATCAGAGCATGCTTCTAACGCCAGCTTCCATTACAACGACGACGACTACCACCACAGCTAAATCAAATACTCCATCCGATATTACGACTTCCGTCTCCTCAAATATAGCAACttcccaaacaacaacaacttctaCAACCAGTAACAAAAGTTCCAGTAGTGTTAAAATTGAACCGATCACTACAACTAGCGAGTAA
- Protein Sequence
- MLENTHAWMSSGPSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKEETFTHLPYGRHSPVFPFQDSTLGYGGPGGQCANGIPTPTGDQMTQEATAAAVAAVAHNFRQQMQMAAAQHQHQQHTDSLGSAGLFSMPPHLASAAAVARGAASPLTGPPGPGGLMLPKASISPALSTTSNPSGGGVVVGPRHPPSPCASALSSMHQLAPGMAVALQMVGGPGRCETATLLSQQQQQHQQQLQQLHLQQQHAALHHQQQKHSHQHQQMLFGTSSLGHQSSTPTAMATSSMASPQQISTTKSSSSSISSSPERMRHSMPVDMPLRSSFTEFGFDLGHNKSSRSFSPARLFPDDIAELVGVTPASRNHHQSMLLTPASITTTTTTTTAKSNTPSDITTSVSSNIATSQTTTTSTTSNKSSSSVKIEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00384502;
- 90% Identity
- iTF_00384502;
- 80% Identity
- -