Cpal011146.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- bab1
- Assembly
- GCA_949710015.1
- Location
- OX453292.1:24288428-24290238[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.9e-18 1.9e-14 53.0 0.0 1 43 54 97 54 99 0.95 2 3 1.6 3.2e+03 -2.1 0.7 3 13 191 201 189 213 0.79 3 3 3.9 7.6e+03 -3.3 0.3 5 12 306 313 306 313 0.92
Sequence Information
- Coding Sequence
- ATGTTGGAAAACACACACGCTTGGATGAGTTCAGGACCATCGATTGCAgCAGATAGTTATCAATATCAGTTACAATCCATGTGGCAAAAATGTTGGAACACCAATCAAAGTTTAATGCATCACTTGAGGTTTCGAGAGAGAGGACCATTGAAATCATGGCGACCCGAAACAATGGCCGAGGCAATTTTTAGCGTATTAAAGGAGGGCCTCTCACTATCTCAAGCGGCCCGGAAATACGACATACCGTATCCCACGTTTGTTCTGTATGCCAATCGAGTTCACAATATGTTGGGGCCATCGATCGATGGTGGACCCGATCTGCGACCCAAAGGTAGAGGTCGTCCGCAACGTATTTTACTTGGTATCTGGCCAGATGAACATATCAAAGGTGTTATTAAAACGGTTGTCTTTCGAGATGCCAAGGACTTGAAGGAGGAAACTTTTACTCACTTGCCATACGGACGACATTCGcCAGTGTTTCCTTTTCAAGATGGCACTTTAGGCTATGGTGGCCCAGGAAGTCAATGTGCCAACGGCATTCCTACACCCACGGGTGATCAAATGACACAAGAAGCTACAGCGGCTGCTGTTGCGGCGGTGGCTCATAACTTTCGGCAACAAATGCAAATGGCAGCCGCTCAAcaccaacatcaacaacacaCAGACAGCTTAGGAAGTGCAGGTCTTTTCAGTATACCGCCGCATTTAACAAGTGCAGCTGCTGTGGCTCGGGGAGCCGCCAGTCCACTTACGGGTCCGCCTGGTCCTGGTGGTTTAATGCTACCAAAGGCGAGTATCTCACCTGCCCTAAGTACGACATCAAATCCAAGTGGTGGTGGTGTCGTTGTTGGACCACGCCATCAACCTTCTCCTTGTGCTTCTGCATTGTCAGGCATGCACCAATTAGGACCCGGCATGGCGGCCGCTTTGCAAATGGTCGGCGTTCCAGGTCGTTGTGAAACTGCAACATTGCTgagtcaacaacaacaacatcaacagcagCTACAGCAATTACATTTGCAACAACAGCACGCAGCTCTACATCATCAGCAGCAAAAACATTCTCACCAGCATCAGCAAATGCTTTTCGGTACAAGTTCCCTGGGGCATCAATCAATTACCCCATCAGCGATGGCAACATCATCGATAGCTTCGCCCCAGCAAATATCTACAACAAAATCTTCCAGCTCATCGATTTCATCATCACCAGAACGTATGCGACACAGTATGCCGGTCGATATACCACTCCGATCATCCTTCACCGAATTTGGTTTTGATTTGGGACACAATAAAAGCTCTCCATCATTTTCTCCTGCGCGTCTTTTCCCAGATGATATAGCCGAACTAGTAGGTGTAACACCAGCATCGAGAAATCATCATCAAAGCATGCTTCTAACGCCAGCTTCCATTACAACGACGACGACTACCACCACGACTAAATCAAATACTCCATCCGATATTACGACTTCCGTCTCCTCAAACATAGCAACTtctcaaacaacaacaacttctaCAACCAGCAACAAAAGTTCCAGTAGTGTTAAAATCGAACCGATCACTACAACTAGCGAGTAA
- Protein Sequence
- MLENTHAWMSSGPSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKEETFTHLPYGRHSPVFPFQDGTLGYGGPGSQCANGIPTPTGDQMTQEATAAAVAAVAHNFRQQMQMAAAQHQHQQHTDSLGSAGLFSIPPHLTSAAAVARGAASPLTGPPGPGGLMLPKASISPALSTTSNPSGGGVVVGPRHQPSPCASALSGMHQLGPGMAAALQMVGVPGRCETATLLSQQQQHQQQLQQLHLQQQHAALHHQQQKHSHQHQQMLFGTSSLGHQSITPSAMATSSIASPQQISTTKSSSSSISSSPERMRHSMPVDIPLRSSFTEFGFDLGHNKSSPSFSPARLFPDDIAELVGVTPASRNHHQSMLLTPASITTTTTTTTTKSNTPSDITTSVSSNIATSQTTTTSTTSNKSSSSVKIEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114939; iTF_01114135;
- 90% Identity
- iTF_01114939; iTF_01114135;
- 80% Identity
- -